RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 LRRC26Q2I0M4 334 aa9.12□□□□□ -0.95
CUX1-219ENST00000606749 PI4K2BQ8TCG2 481 aa9.12□□□□□ -0.95
CUX1-219ENST00000606749 OTUD7AQ8TE49 926 aaPredicted RBP9.12□□□□□ -0.95
CUX1-219ENST00000606749 FBXO28Q9NVF7 368 aa9.12□□□□□ -0.95
CUX1-219ENST00000606749 SLC5A4Q9NY91 659 aa9.12□□□□□ -0.95
CUX1-219ENST00000606749 NYAP2Q9P242 653 aa9.12□□□□□ -0.95
CUX1-219ENST00000606749 CEP290O15078 2479 aa9.12□□□□□ -0.95
CUX1-219ENST00000606749 RANBP2P49792 3224 aaKnown RBP9.12□□□□□ -0.95
CUX1-219ENST00000606749 MYH7P12883 1935 aa9.11□□□□□ -0.95
CUX1-219ENST00000606749 ALPK3Q96L96 1907 aa9.11□□□□□ -0.95
CUX1-219ENST00000606749 F5H6K3 240 aa9.11□□□□□ -0.95
CUX1-219ENST00000606749 ERC2O15083 957 aa9.11□□□□□ -0.95
CUX1-219ENST00000606749 RAD21O60216 631 aa9.11□□□□□ -0.95
CUX1-219ENST00000606749 APPP05067 770 aa9.11□□□□□ -0.95
CUX1-219ENST00000606749 FCER1AP12319 257 aa9.11□□□□□ -0.95
CUX1-219ENST00000606749 STAT3P40763 770 aa9.11□□□□□ -0.95
CUX1-219ENST00000606749 KLRC3Q07444 240 aa9.11□□□□□ -0.95
CUX1-219ENST00000606749 LRRFIP1Q32MZ4 808 aaKnown RBP9.11□□□□□ -0.95
CUX1-219ENST00000606749 PRAMEF19Q5SWL8 479 aa9.11□□□□□ -0.95
CUX1-219ENST00000606749 FAM83BQ5T0W9 1011 aa9.11□□□□□ -0.95
CUX1-219ENST00000606749 RIOX2Q8IUF8 465 aa9.11□□□□□ -0.95
CUX1-219ENST00000606749 IFNL3Q8IZI9 196 aa9.11□□□□□ -0.95
CUX1-219ENST00000606749 ZNF444Q8N0Y2 327 aaPredicted RBP9.11□□□□□ -0.95
CUX1-219ENST00000606749 SEC62Q99442 399 aaKnown RBP9.11□□□□□ -0.95
CUX1-219ENST00000606749 SENP6Q9GZR1 1112 aaPredicted RBP9.11□□□□□ -0.95
CUX1-219ENST00000606749 EPB41L4AQ9HCS5 686 aaPredicted RBP9.11□□□□□ -0.95
CUX1-219ENST00000606749 CLIP2Q9UDT6 1046 aa9.11□□□□□ -0.95
CUX1-219ENST00000606749 PPP1R9AQ9ULJ8 1098 aa9.11□□□□□ -0.95
CUX1-219ENST00000606749 IGKV6D-41A0A0C4DH26 115 aa9.1□□□□□ -0.95
CUX1-219ENST00000606749 DNM1LO00429 736 aa9.1□□□□□ -0.95
CUX1-219ENST00000606749 SOX1O00570 391 aaPredicted RBP9.1□□□□□ -0.95
CUX1-219ENST00000606749 SEPT4O43236 478 aa9.1□□□□□ -0.95
CUX1-219ENST00000606749 MAGEA10P43363 369 aaPredicted RBP9.1□□□□□ -0.95
CUX1-219ENST00000606749 TDO2P48775 406 aa9.1□□□□□ -0.95
CUX1-219ENST00000606749 RRP1P56182 461 aaKnown RBP9.1□□□□□ -0.95
CUX1-219ENST00000606749 ARRDC4Q8NCT1 418 aa9.1□□□□□ -0.95
CUX1-219ENST00000606749 REPS2Q8NFH8 660 aa9.1□□□□□ -0.95
CUX1-219ENST00000606749 MKL1Q969V6 931 aa9.1□□□□□ -0.95
CUX1-219ENST00000606749 MAML3Q96JK9 1138 aa9.1□□□□□ -0.95
CUX1-219ENST00000606749 MMP19Q99542 508 aa9.1□□□□□ -0.95
CUX1-219ENST00000606749 NUP88Q99567 741 aaPredicted RBP9.1□□□□□ -0.95
CUX1-219ENST00000606749 ZNF287Q9HBT7 754 aa9.1□□□□□ -0.95
CUX1-219ENST00000606749 ZNF214Q9UL59 606 aaPredicted RBP9.1□□□□□ -0.95
CUX1-219ENST00000606749 TRIOBPQ9H2D6 2365 aa9.1□□□□□ -0.95
CUX1-219ENST00000606749 ROBO3Q96MS0 1386 aa9.1□□□□□ -0.95
CUX1-219ENST00000606749 MYH8P13535 1937 aa9.09□□□□□ -0.95
CUX1-219ENST00000606749 SZT2Q5T011 3432 aa9.09□□□□□ -0.95
CUX1-219ENST00000606749 PRDM1O75626 825 aa9.09□□□□□ -0.95
CUX1-219ENST00000606749 NDUFB10O96000 172 aa9.09□□□□□ -0.95
CUX1-219ENST00000606749 PGK2P07205 417 aa9.09□□□□□ -0.95
CUX1-219ENST00000606749 MX1P20591 662 aa9.09□□□□□ -0.95
CUX1-219ENST00000606749 ZNF792Q3KQV3 632 aa9.09□□□□□ -0.95
CUX1-219ENST00000606749 ZMYM1Q5SVZ6 1142 aa9.09□□□□□ -0.95
CUX1-219ENST00000606749 GJC2Q5T442 439 aaPredicted RBP9.09□□□□□ -0.95
CUX1-219ENST00000606749 ANKRD45Q5TZF3 282 aa9.09□□□□□ -0.95
CUX1-219ENST00000606749 ANO1Q5XXA6 986 aa9.09□□□□□ -0.95
CUX1-219ENST00000606749 PRPF38AQ8NAV1 312 aaKnown RBP9.09□□□□□ -0.95
CUX1-219ENST00000606749 SLF1Q9BQI6 1058 aa9.09□□□□□ -0.95
CUX1-219ENST00000606749 FSD1Q9BTV5 496 aa9.09□□□□□ -0.95
CUX1-219ENST00000606749 NACAP1Q9BZK3 213 aa9.09□□□□□ -0.95
CUX1-219ENST00000606749 MTMR4Q9NYA4 1195 aa9.09□□□□□ -0.95
CUX1-219ENST00000606749 DIS3Q9Y2L1 958 aaKnown RBP9.09□□□□□ -0.95
CUX1-219ENST00000606749 A0A0G2JMZ2 1700 aa9.08□□□□□ -0.96
CUX1-219ENST00000606749 SALL3Q9BXA9 1300 aa9.08□□□□□ -0.96
CUX1-219ENST00000606749 ZNFX1Q9P2E3 1918 aaKnown RBP9.08□□□□□ -0.96
CUX1-219ENST00000606749 TTLL1O95922 423 aa9.08□□□□□ -0.96
CUX1-219ENST00000606749 COPB2P35606 906 aa9.08□□□□□ -0.96
CUX1-219ENST00000606749 ATN1P54259 1190 aaPredicted RBP9.08□□□□□ -0.96
CUX1-219ENST00000606749 PDE4BQ07343 736 aa9.08□□□□□ -0.96
CUX1-219ENST00000606749 KCTD2Q14681 263 aa9.08□□□□□ -0.96
CUX1-219ENST00000606749 FAM47AQ5JRC9 791 aa9.08□□□□□ -0.96
CUX1-219ENST00000606749 NEDD1Q8NHV4 660 aa9.08□□□□□ -0.96
CUX1-219ENST00000606749 CEP95Q96GE4 821 aa9.08□□□□□ -0.96
CUX1-219ENST00000606749 LRCH3Q96II8 777 aa9.08□□□□□ -0.96
CUX1-219ENST00000606749 CRBNQ96SW2 442 aa9.08□□□□□ -0.96
CUX1-219ENST00000606749 UBE2OQ9C0C9 1292 aaKnown RBP9.08□□□□□ -0.96
CUX1-219ENST00000606749 NAPBQ9H115 298 aa9.08□□□□□ -0.96
CUX1-219ENST00000606749 NRBP1Q9UHY1 535 aa9.08□□□□□ -0.96
CUX1-219ENST00000606749 SYNPO2Q9UMS6 1093 aa9.08□□□□□ -0.96
CUX1-219ENST00000606749 RIPK3Q9Y572 518 aa9.08□□□□□ -0.96
CUX1-219ENST00000606749 ZNF236Q9UL36 1845 aa9.08□□□□□ -0.96
CUX1-219ENST00000606749 ATP2A1O14983 1001 aa9.07□□□□□ -0.96
CUX1-219ENST00000606749 FOXP2O15409 715 aa9.07□□□□□ -0.96
CUX1-219ENST00000606749 ZBED4O75132 1171 aa9.07□□□□□ -0.96
CUX1-219ENST00000606749 SLC3A2P08195 630 aaKnown RBP9.07□□□□□ -0.96
CUX1-219ENST00000606749 TSPY3P0CV98 308 aa9.07□□□□□ -0.96
CUX1-219ENST00000606749 TSPY8P0CW00 308 aa9.07□□□□□ -0.96
CUX1-219ENST00000606749 TAL1P17542 331 aaPredicted RBP9.07□□□□□ -0.96
CUX1-219ENST00000606749 MDM2Q00987 491 aaPredicted RBP9.07□□□□□ -0.96
CUX1-219ENST00000606749 TFAP4Q01664 338 aa9.07□□□□□ -0.96
CUX1-219ENST00000606749 PPARAQ07869 468 aa9.07□□□□□ -0.96
CUX1-219ENST00000606749 LRRC41Q15345 812 aa9.07□□□□□ -0.96
CUX1-219ENST00000606749 LRIT3Q3SXY7 679 aa9.07□□□□□ -0.96
CUX1-219ENST00000606749 SNRNP48Q6IEG0 339 aaKnown RBP9.07□□□□□ -0.96
CUX1-219ENST00000606749 SLC39A5Q6ZMH5 540 aa9.07□□□□□ -0.96
CUX1-219ENST00000606749 PPP4R3CPQ6ZMV5 832 aa9.07□□□□□ -0.96
CUX1-219ENST00000606749 CCDC129Q6ZRS4 1044 aa9.07□□□□□ -0.96
CUX1-219ENST00000606749 TDHQ8IZJ6 230 aa9.07□□□□□ -0.96
CUX1-219ENST00000606749 CPXCR1Q8N123 301 aa9.07□□□□□ -0.96
CUX1-219ENST00000606749 GMCL1P1Q8NEA9 526 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms