RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 GABPAQ06546 454 aa15.02■□□□□ -0
UPF1-208ENST00000600012 RPAP3Q9H6T3 665 aaPredicted RBP15.02■□□□□ -0
UPF1-208ENST00000600012 MCM9Q9NXL9 1143 aa15.02■□□□□ -0
UPF1-208ENST00000600012 BTBD7Q9P203 1132 aa15.02■□□□□ -0
UPF1-208ENST00000600012 RBM8AQ9Y5S9 174 aaKnown RBP15.02■□□□□ -0
UPF1-208ENST00000600012 A0A0G2JMZ2 1700 aa15.01□□□□□ -0.01
UPF1-208ENST00000600012 MSCO60682 206 aa15.01□□□□□ -0.01
UPF1-208ENST00000600012 MCCP23508 829 aa15.01□□□□□ -0.01
UPF1-208ENST00000600012 GRB14Q14449 540 aa15.01□□□□□ -0.01
UPF1-208ENST00000600012 SEPT2Q15019 361 aa15.01□□□□□ -0.01
UPF1-208ENST00000600012 LRIT3Q3SXY7 679 aa15.01□□□□□ -0.01
UPF1-208ENST00000600012 TDHQ8IZJ6 230 aa15.01□□□□□ -0.01
UPF1-208ENST00000600012 LCORLQ8N3X6 602 aa15.01□□□□□ -0.01
UPF1-208ENST00000600012 UBE2OQ9C0C9 1292 aaKnown RBP15.01□□□□□ -0.01
UPF1-208ENST00000600012 ARMT1Q9H993 441 aa15.01□□□□□ -0.01
UPF1-208ENST00000600012 RLFQ13129 1914 aa15.01□□□□□ -0.01
UPF1-208ENST00000600012 FOXP2O15409 715 aa15□□□□□ -0.01
UPF1-208ENST00000600012 EPB41L2O43491 1005 aaKnown RBP15□□□□□ -0.01
UPF1-208ENST00000600012 HSPA4P34932 840 aa15□□□□□ -0.01
UPF1-208ENST00000600012 ATP2B2Q01814 1243 aa15□□□□□ -0.01
UPF1-208ENST00000600012 LRRC26Q2I0M4 334 aa15□□□□□ -0.01
UPF1-208ENST00000600012 MAP4K1Q92918 833 aa15□□□□□ -0.01
UPF1-208ENST00000600012 HOXC10Q9NYD6 342 aa15□□□□□ -0.01
UPF1-208ENST00000600012 FLRT1Q9NZU1 646 aa15□□□□□ -0.01
UPF1-208ENST00000600012 MPHOSPH10O00566 681 aaKnown RBP14.99□□□□□ -0.01
UPF1-208ENST00000600012 HSPD1P10809 573 aaKnown RBP14.99□□□□□ -0.01
UPF1-208ENST00000600012 COG2Q14746 738 aa14.99□□□□□ -0.01
UPF1-208ENST00000600012 TMEM179Q6ZVK1 233 aa14.99□□□□□ -0.01
UPF1-208ENST00000600012 SLC17A8Q8NDX2 589 aa14.99□□□□□ -0.01
UPF1-208ENST00000600012 LPAR1Q92633 364 aa14.99□□□□□ -0.01
UPF1-208ENST00000600012 STRBPQ96SI9 672 aaKnown RBP14.99□□□□□ -0.01
UPF1-208ENST00000600012 KIF2CQ99661 725 aa14.99□□□□□ -0.01
UPF1-208ENST00000600012 DSCC1Q9BVC3 393 aa14.99□□□□□ -0.01
UPF1-208ENST00000600012 TANGO6Q9C0B7 1094 aa14.99□□□□□ -0.01
UPF1-208ENST00000600012 DCP1AQ9NPI6 582 aaPredicted RBP14.99□□□□□ -0.01
UPF1-208ENST00000600012 SWAP70Q9UH65 585 aa14.99□□□□□ -0.01
UPF1-208ENST00000600012 DDX20Q9UHI6 824 aaKnown RBP14.99□□□□□ -0.01
UPF1-208ENST00000600012 PARP14Q460N5 1801 aa14.99□□□□□ -0.01
UPF1-208ENST00000600012 A0A1W2PRG0 241 aa14.98□□□□□ -0.01
UPF1-208ENST00000600012 STRNO43815 780 aa14.98□□□□□ -0.01
UPF1-208ENST00000600012 CNGA1P29973 690 aa14.98□□□□□ -0.01
UPF1-208ENST00000600012 ANP32AP39687 249 aaKnown RBP14.98□□□□□ -0.01
UPF1-208ENST00000600012 SHCBP1Q8NEM2 672 aa14.98□□□□□ -0.01
UPF1-208ENST00000600012 NPLOC4Q8TAT6 608 aa14.98□□□□□ -0.01
UPF1-208ENST00000600012 SDR42E1Q8WUS8 393 aa14.98□□□□□ -0.01
UPF1-208ENST00000600012 MOV10L1Q9BXT6 1211 aaKnown RBP14.98□□□□□ -0.01
UPF1-208ENST00000600012 U3KPZ7 1027 aaPredicted RBP14.98□□□□□ -0.01
UPF1-208ENST00000600012 PRKAB2O43741 272 aa14.97□□□□□ -0.01
UPF1-208ENST00000600012 CYP2C19P33261 490 aa14.97□□□□□ -0.01
UPF1-208ENST00000600012 EVX2Q03828 476 aa14.97□□□□□ -0.01
UPF1-208ENST00000600012 NECTIN1Q15223 517 aa14.97□□□□□ -0.01
UPF1-208ENST00000600012 CREB3L3Q68CJ9 461 aa14.97□□□□□ -0.01
UPF1-208ENST00000600012 DPP9Q86TI2 863 aa14.97□□□□□ -0.01
UPF1-208ENST00000600012 RASEFQ8IZ41 740 aa14.97□□□□□ -0.01
UPF1-208ENST00000600012 DEFB123Q8N688 67 aa14.97□□□□□ -0.01
UPF1-208ENST00000600012 MB21D1Q8N884 522 aa14.97□□□□□ -0.01
UPF1-208ENST00000600012 SENP6Q9GZR1 1112 aaPredicted RBP14.97□□□□□ -0.01
UPF1-208ENST00000600012 SPATC1LQ9H0A9 340 aa14.97□□□□□ -0.01
UPF1-208ENST00000600012 SNX14Q9Y5W7 946 aa14.97□□□□□ -0.01
UPF1-208ENST00000600012 ZNFX1Q9P2E3 1918 aaKnown RBP14.97□□□□□ -0.01
UPF1-208ENST00000600012 DNM1LO00429 736 aa14.96□□□□□ -0.01
UPF1-208ENST00000600012 SLC27A2O14975 620 aa14.96□□□□□ -0.01
UPF1-208ENST00000600012 IGHA2P01877 340 aa14.96□□□□□ -0.01
UPF1-208ENST00000600012 CYP2D6P10635 497 aa14.96□□□□□ -0.01
UPF1-208ENST00000600012 CYBAP13498 195 aa14.96□□□□□ -0.01
UPF1-208ENST00000600012 ADORA2AP29274 412 aa14.96□□□□□ -0.01
UPF1-208ENST00000600012 OLFML2BQ68BL8 750 aa14.96□□□□□ -0.01
UPF1-208ENST00000600012 SLC44A5Q8NCS7 719 aa14.96□□□□□ -0.01
UPF1-208ENST00000600012 SH2D4AQ9H788 454 aa14.96□□□□□ -0.01
UPF1-208ENST00000600012 ARHGEF10LQ9HCE6 1279 aa14.96□□□□□ -0.01
UPF1-208ENST00000600012 EPB41L4AQ9HCS5 686 aaPredicted RBP14.96□□□□□ -0.01
UPF1-208ENST00000600012 ATP8A2Q9NTI2 1148 aa14.96□□□□□ -0.01
UPF1-208ENST00000600012 SLC4A4Q9Y6R1 1079 aa14.96□□□□□ -0.01
UPF1-208ENST00000600012 COL11A1P12107 1806 aaPredicted RBP14.95□□□□□ -0.02
UPF1-208ENST00000600012 APPP05067 770 aa14.95□□□□□ -0.02
UPF1-208ENST00000600012 ERCC3P19447 782 aa14.95□□□□□ -0.02
UPF1-208ENST00000600012 DSG3P32926 999 aa14.95□□□□□ -0.02
UPF1-208ENST00000600012 MDM2Q00987 491 aaPredicted RBP14.95□□□□□ -0.02
UPF1-208ENST00000600012 ICA1Q05084 483 aa14.95□□□□□ -0.02
UPF1-208ENST00000600012 AMOTL1Q8IY63 956 aa14.95□□□□□ -0.02
UPF1-208ENST00000600012 TRPV1Q8NER1 839 aa14.95□□□□□ -0.02
UPF1-208ENST00000600012 CCDC17Q96LX7 622 aa14.95□□□□□ -0.02
UPF1-208ENST00000600012 MROH8Q9H579 483 aa14.95□□□□□ -0.02
UPF1-208ENST00000600012 SLC5A4Q9NY91 659 aa14.95□□□□□ -0.02
UPF1-208ENST00000600012 TMX2Q9Y320 296 aa14.95□□□□□ -0.02
UPF1-208ENST00000600012 TAF6LQ9Y6J9 622 aa14.95□□□□□ -0.02
UPF1-208ENST00000600012 LTBP2Q14767 1821 aa14.94□□□□□ -0.02
UPF1-208ENST00000600012 GSG1L2A8MUP6 293 aa14.94□□□□□ -0.02
UPF1-208ENST00000600012 FLOT1O75955 427 aa14.94□□□□□ -0.02
UPF1-208ENST00000600012 GNAT2P19087 354 aa14.94□□□□□ -0.02
UPF1-208ENST00000600012 ANAPC15P60006 121 aa14.94□□□□□ -0.02
UPF1-208ENST00000600012 KIAA1755Q5JYT7 1200 aa14.94□□□□□ -0.02
UPF1-208ENST00000600012 Q7L0L9 218 aa14.94□□□□□ -0.02
UPF1-208ENST00000600012 ABRAQ8N0Z2 381 aa14.94□□□□□ -0.02
UPF1-208ENST00000600012 ARRDC4Q8NCT1 418 aa14.94□□□□□ -0.02
UPF1-208ENST00000600012 KCNB2Q92953 911 aa14.94□□□□□ -0.02
UPF1-208ENST00000600012 DYNLL2Q96FJ2 89 aa14.94□□□□□ -0.02
UPF1-208ENST00000600012 DDRGK1Q96HY6 314 aa14.94□□□□□ -0.02
UPF1-208ENST00000600012 LBHD1Q9BQE6 289 aaPredicted RBP14.94□□□□□ -0.02
UPF1-208ENST00000600012 VCPKMTQ9H867 229 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms