RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 ZNF532Q9HCE3 1301 aa10.5□□□□□ -0.73
SHKBP1-220ENST00000599716 MYH8P13535 1937 aa10.49□□□□□ -0.73
SHKBP1-220ENST00000599716 GLRX3O76003 335 aaKnown RBP10.49□□□□□ -0.73
SHKBP1-220ENST00000599716 CYBAP13498 195 aa10.49□□□□□ -0.73
SHKBP1-220ENST00000599716 AKR1B1P15121 316 aa10.49□□□□□ -0.73
SHKBP1-220ENST00000599716 ERCC3P19447 782 aa10.49□□□□□ -0.73
SHKBP1-220ENST00000599716 HNRNPUQ00839 825 aaKnown RBP eCLIP10.49□□□□□ -0.73
SHKBP1-220ENST00000599716 FOXK2Q01167 660 aa10.49□□□□□ -0.73
SHKBP1-220ENST00000599716 TRIM60Q495X7 471 aa10.49□□□□□ -0.73
SHKBP1-220ENST00000599716 LBX2Q6XYB7 198 aa10.49□□□□□ -0.73
SHKBP1-220ENST00000599716 SH3RF1Q7Z6J0 888 aa10.49□□□□□ -0.73
SHKBP1-220ENST00000599716 DPP9Q86TI2 863 aa10.49□□□□□ -0.73
SHKBP1-220ENST00000599716 SIAH1Q8IUQ4 282 aa10.49□□□□□ -0.73
SHKBP1-220ENST00000599716 LENG1Q96BZ8 264 aaPredicted RBP10.49□□□□□ -0.73
SHKBP1-220ENST00000599716 SMCHD1A6NHR9 2005 aa10.49□□□□□ -0.73
SHKBP1-220ENST00000599716 A0A0G2JMZ2 1700 aa10.49□□□□□ -0.73
SHKBP1-220ENST00000599716 COL11A1P12107 1806 aaPredicted RBP10.49□□□□□ -0.73
SHKBP1-220ENST00000599716 TCRBV5S4A2TA0A5A2 114 aa10.48□□□□□ -0.73
SHKBP1-220ENST00000599716 HOXC6P09630 235 aa10.48□□□□□ -0.73
SHKBP1-220ENST00000599716 SHHQ15465 462 aa10.48□□□□□ -0.73
SHKBP1-220ENST00000599716 FAM47AQ5JRC9 791 aa10.48□□□□□ -0.73
SHKBP1-220ENST00000599716 NCAPG2Q86XI2 1143 aa10.48□□□□□ -0.73
SHKBP1-220ENST00000599716 STK11IPQ8N1F8 1099 aa10.48□□□□□ -0.73
SHKBP1-220ENST00000599716 RHPN1Q8TCX5 695 aa10.48□□□□□ -0.73
SHKBP1-220ENST00000599716 LPAR1Q92633 364 aa10.48□□□□□ -0.73
SHKBP1-220ENST00000599716 SPATC1LQ9H0A9 340 aa10.48□□□□□ -0.73
SHKBP1-220ENST00000599716 DCP1AQ9NPI6 582 aaPredicted RBP10.48□□□□□ -0.73
SHKBP1-220ENST00000599716 FBXO28Q9NVF7 368 aa10.48□□□□□ -0.73
SHKBP1-220ENST00000599716 CHD7Q9P2D1 2997 aa10.48□□□□□ -0.73
SHKBP1-220ENST00000599716 PARP14Q460N5 1801 aa10.47□□□□□ -0.73
SHKBP1-220ENST00000599716 BAHCC1Q9P281 2608 aa10.47□□□□□ -0.73
SHKBP1-220ENST00000599716 ZNFX1Q9P2E3 1918 aaKnown RBP10.47□□□□□ -0.73
SHKBP1-220ENST00000599716 DNM1LO00429 736 aa10.47□□□□□ -0.73
SHKBP1-220ENST00000599716 FLOT1O75955 427 aa10.47□□□□□ -0.73
SHKBP1-220ENST00000599716 IGHA2P01877 340 aa10.47□□□□□ -0.73
SHKBP1-220ENST00000599716 PGK2P07205 417 aa10.47□□□□□ -0.73
SHKBP1-220ENST00000599716 TAL1P17542 331 aaPredicted RBP10.47□□□□□ -0.73
SHKBP1-220ENST00000599716 ADCYAP1R1P41586 468 aa10.47□□□□□ -0.73
SHKBP1-220ENST00000599716 COG2Q14746 738 aa10.47□□□□□ -0.73
SHKBP1-220ENST00000599716 SLC39A5Q6ZMH5 540 aa10.47□□□□□ -0.73
SHKBP1-220ENST00000599716 BADQ92934 168 aa10.47□□□□□ -0.73
SHKBP1-220ENST00000599716 CRNKL1Q9BZJ0 848 aaKnown RBP10.47□□□□□ -0.73
SHKBP1-220ENST00000599716 ANKRD11Q6UB99 2663 aaPredicted RBP10.47□□□□□ -0.73
SHKBP1-220ENST00000599716 ZFHX4Q86UP3 3567 aa10.46□□□□□ -0.73
SHKBP1-220ENST00000599716 ATRXP46100 2492 aa10.46□□□□□ -0.73
SHKBP1-220ENST00000599716 ZFHX2Q9C0A1 2572 aaPredicted RBP10.46□□□□□ -0.73
SHKBP1-220ENST00000599716 TRIM43BA6NCK2 446 aa10.46□□□□□ -0.73
SHKBP1-220ENST00000599716 RAD21O60216 631 aa10.46□□□□□ -0.73
SHKBP1-220ENST00000599716 MBD4O95243 580 aa10.46□□□□□ -0.73
SHKBP1-220ENST00000599716 ITGB8P26012 769 aa10.46□□□□□ -0.73
SHKBP1-220ENST00000599716 IRX5P78411 483 aaPredicted RBP10.46□□□□□ -0.73
SHKBP1-220ENST00000599716 TMEM132BQ14DG7 1078 aa10.46□□□□□ -0.73
SHKBP1-220ENST00000599716 SIRT2Q8IXJ6 389 aa10.46□□□□□ -0.73
SHKBP1-220ENST00000599716 TRIM43Q96BQ3 446 aaPredicted RBP10.46□□□□□ -0.73
SHKBP1-220ENST00000599716 BOLA2Q9H3K6 86 aa10.46□□□□□ -0.73
SHKBP1-220ENST00000599716 ZNF236Q9UL36 1845 aa10.46□□□□□ -0.74
SHKBP1-220ENST00000599716 REV3LO60673 3130 aa10.46□□□□□ -0.74
SHKBP1-220ENST00000599716 KBTBD13C9JR72 458 aa10.45□□□□□ -0.74
SHKBP1-220ENST00000599716 GPR37L1O60883 481 aa10.45□□□□□ -0.74
SHKBP1-220ENST00000599716 PGK1P00558 417 aa10.45□□□□□ -0.74
SHKBP1-220ENST00000599716 EPHB4P54760 987 aa10.45□□□□□ -0.74
SHKBP1-220ENST00000599716 ICA1Q05084 483 aa10.45□□□□□ -0.74
SHKBP1-220ENST00000599716 LRRC41Q15345 812 aa10.45□□□□□ -0.74
SHKBP1-220ENST00000599716 TMEM179Q6ZVK1 233 aa10.45□□□□□ -0.74
SHKBP1-220ENST00000599716 MAML3Q96JK9 1138 aa10.45□□□□□ -0.74
SHKBP1-220ENST00000599716 NECAB3Q96P71 396 aaPredicted RBP10.45□□□□□ -0.74
SHKBP1-220ENST00000599716 NUP88Q99567 741 aaPredicted RBP10.45□□□□□ -0.74
SHKBP1-220ENST00000599716 EPHX3Q9H6B9 360 aa10.45□□□□□ -0.74
SHKBP1-220ENST00000599716 PDLIM7Q9NR12 457 aa10.45□□□□□ -0.74
SHKBP1-220ENST00000599716 HOXC10Q9NYD6 342 aa10.45□□□□□ -0.74
SHKBP1-220ENST00000599716 PRKAG2Q9UGJ0 569 aa10.45□□□□□ -0.74
SHKBP1-220ENST00000599716 PLXNA1Q9UIW2 1896 aa10.44□□□□□ -0.74
SHKBP1-220ENST00000599716 USP17L12C9JPN9 530 aa10.44□□□□□ -0.74
SHKBP1-220ENST00000599716 USP17L21D6R901 530 aa10.44□□□□□ -0.74
SHKBP1-220ENST00000599716 SEPT4O43236 478 aa10.44□□□□□ -0.74
SHKBP1-220ENST00000599716 SMARCA5O60264 1052 aaPredicted RBP10.44□□□□□ -0.74
SHKBP1-220ENST00000599716 MSCO60682 206 aa10.44□□□□□ -0.74
SHKBP1-220ENST00000599716 IFIT2P09913 472 aaKnown RBP10.44□□□□□ -0.74
SHKBP1-220ENST00000599716 SLC4A3P48751 1232 aa10.44□□□□□ -0.74
SHKBP1-220ENST00000599716 CDK8P49336 464 aa10.44□□□□□ -0.74
SHKBP1-220ENST00000599716 TLE2Q04725 743 aa10.44□□□□□ -0.74
SHKBP1-220ENST00000599716 GRIN2CQ14957 1233 aa10.44□□□□□ -0.74
SHKBP1-220ENST00000599716 AKNAD1Q5T1N1 836 aa10.44□□□□□ -0.74
SHKBP1-220ENST00000599716 OLFML2BQ68BL8 750 aa10.44□□□□□ -0.74
SHKBP1-220ENST00000599716 ERC1Q8IUD2 1116 aa10.44□□□□□ -0.74
SHKBP1-220ENST00000599716 VCPKMTQ9H867 229 aa10.44□□□□□ -0.74
SHKBP1-220ENST00000599716 COG6Q9Y2V7 657 aa10.44□□□□□ -0.74
SHKBP1-220ENST00000599716 TMX2Q9Y320 296 aa10.44□□□□□ -0.74
SHKBP1-220ENST00000599716 TPRP12270 2363 aaKnown RBP10.43□□□□□ -0.74
SHKBP1-220ENST00000599716 EEF2P13639 858 aaKnown RBP10.43□□□□□ -0.74
SHKBP1-220ENST00000599716 ADD2P35612 726 aa10.43□□□□□ -0.74
SHKBP1-220ENST00000599716 TTF1Q15361 905 aaPredicted RBP10.43□□□□□ -0.74
SHKBP1-220ENST00000599716 FAM83BQ5T0W9 1011 aa10.43□□□□□ -0.74
SHKBP1-220ENST00000599716 CERS3Q8IU89 383 aa10.43□□□□□ -0.74
SHKBP1-220ENST00000599716 MIER1Q8N108 512 aa10.43□□□□□ -0.74
SHKBP1-220ENST00000599716 CLASRPQ8N2M8 674 aaKnown RBP10.43□□□□□ -0.74
SHKBP1-220ENST00000599716 ARRDC4Q8NCT1 418 aa10.43□□□□□ -0.74
SHKBP1-220ENST00000599716 SHCBP1Q8NEM2 672 aa10.43□□□□□ -0.74
SHKBP1-220ENST00000599716 CHMP4CQ96CF2 233 aa10.43□□□□□ -0.74
SHKBP1-220ENST00000599716 MMP19Q99542 508 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms