RNA–Protein interactions for RNA: ENST00000597928.5

USHBP1-207, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 3,598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-207ENST00000597928 LTN1O94822 1766 aa13.97□□□□□ -0.17
USHBP1-207ENST00000597928 TCERG1LQ5VWI1 586 aa13.97□□□□□ -0.17
USHBP1-207ENST00000597928 SPATA1Q5VX52 437 aa13.97□□□□□ -0.17
USHBP1-207ENST00000597928 CTR9Q6PD62 1173 aa13.97□□□□□ -0.17
USHBP1-207ENST00000597928 RAD9BQ6WBX8 426 aa13.97□□□□□ -0.17
USHBP1-207ENST00000597928 TPTE2Q6XPS3 522 aa13.97□□□□□ -0.17
USHBP1-207ENST00000597928 SCNN1DP51172 638 aa13.96□□□□□ -0.17
USHBP1-207ENST00000597928 TEX11Q8IYF3 940 aa13.96□□□□□ -0.17
USHBP1-207ENST00000597928 FAM84BQ96KN1 310 aaPredicted RBP13.96□□□□□ -0.17
USHBP1-207ENST00000597928 SEPT11Q9NVA2 429 aaKnown RBP13.96□□□□□ -0.17
USHBP1-207ENST00000597928 NFAT5O94916 1531 aa13.96□□□□□ -0.17
USHBP1-207ENST00000597928 PSMA7O14818 248 aa13.96□□□□□ -0.17
USHBP1-207ENST00000597928 UFL1O94874 794 aa13.96□□□□□ -0.17
USHBP1-207ENST00000597928 KRT31Q15323 416 aa13.96□□□□□ -0.17
USHBP1-207ENST00000597928 BLIDQ8IZY5 108 aa13.96□□□□□ -0.17
USHBP1-207ENST00000597928 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.96□□□□□ -0.17
USHBP1-207ENST00000597928 ZNF622Q969S3 477 aaKnown RBP eCLIP13.96□□□□□ -0.17
USHBP1-207ENST00000597928 COA7Q96BR5 231 aa13.96□□□□□ -0.17
USHBP1-207ENST00000597928 PDE11AQ9HCR9 933 aa13.96□□□□□ -0.17
USHBP1-207ENST00000597928 SLFN14P0C7P3 912 aa13.96□□□□□ -0.18
USHBP1-207ENST00000597928 SLURP2P0DP57 97 aa13.96□□□□□ -0.18
USHBP1-207ENST00000597928 SLC16A2P36021 539 aa13.96□□□□□ -0.18
USHBP1-207ENST00000597928 TRIM28Q13263 835 aaKnown RBP13.96□□□□□ -0.18
USHBP1-207ENST00000597928 SPA17Q15506 151 aa13.96□□□□□ -0.18
USHBP1-207ENST00000597928 TTC19Q6DKK2 380 aaPredicted RBP13.96□□□□□ -0.18
USHBP1-207ENST00000597928 TYW1BQ6NUM6 668 aa13.96□□□□□ -0.18
USHBP1-207ENST00000597928 TC2NQ8N9U0 490 aa13.96□□□□□ -0.18
USHBP1-207ENST00000597928 FAM107BQ9H098 131 aa13.96□□□□□ -0.18
USHBP1-207ENST00000597928 ERLIN1O75477 346 aa13.95□□□□□ -0.18
USHBP1-207ENST00000597928 RPN1P04843 607 aaKnown RBP13.95□□□□□ -0.18
USHBP1-207ENST00000597928 PARP10Q53GL7 1025 aa13.95□□□□□ -0.18
USHBP1-207ENST00000597928 SLIT1O75093 1534 aa13.95□□□□□ -0.18
USHBP1-207ENST00000597928 FAM196BA6NMK8 535 aa13.95□□□□□ -0.18
USHBP1-207ENST00000597928 ADAMTS3O15072 1205 aa13.95□□□□□ -0.18
USHBP1-207ENST00000597928 CAPN2P17655 700 aa13.95□□□□□ -0.18
USHBP1-207ENST00000597928 SNAP25P60880 206 aa13.95□□□□□ -0.18
USHBP1-207ENST00000597928 SGMS1Q86VZ5 419 aa13.95□□□□□ -0.18
USHBP1-207ENST00000597928 C10orf67Q8IYJ2 551 aa13.95□□□□□ -0.18
USHBP1-207ENST00000597928 CCDC148Q8NFR7 591 aa13.95□□□□□ -0.18
USHBP1-207ENST00000597928 SH3RF3Q8TEJ3 882 aaPredicted RBP13.95□□□□□ -0.18
USHBP1-207ENST00000597928 STAG1Q8WVM7 1258 aa13.95□□□□□ -0.18
USHBP1-207ENST00000597928 TIGD1Q96MW7 591 aa13.95□□□□□ -0.18
USHBP1-207ENST00000597928 NOC4LQ9BVI4 516 aaKnown RBP13.95□□□□□ -0.18
USHBP1-207ENST00000597928 INTS13Q9NVM9 706 aa13.95□□□□□ -0.18
USHBP1-207ENST00000597928 CCNL1Q9UK58 526 aaPredicted RBP13.95□□□□□ -0.18
USHBP1-207ENST00000597928 TCRBV5S4A2TA0A5A2 114 aa13.94□□□□□ -0.18
USHBP1-207ENST00000597928 KLRF2D3W0D1 207 aa13.94□□□□□ -0.18
USHBP1-207ENST00000597928 BAG3O95817 575 aa13.94□□□□□ -0.18
USHBP1-207ENST00000597928 CCDC40Q4G0X9 1142 aa13.94□□□□□ -0.18
USHBP1-207ENST00000597928 LEKR1Q6ZMV7 388 aa13.94□□□□□ -0.18
USHBP1-207ENST00000597928 FMN2Q9NZ56 1722 aa13.94□□□□□ -0.18
USHBP1-207ENST00000597928 RSPH14Q9UHP6 348 aa13.94□□□□□ -0.18
USHBP1-207ENST00000597928 FBXO3Q9UK99 471 aa13.94□□□□□ -0.18
USHBP1-207ENST00000597928 SMCO2A6NFE2 343 aa13.94□□□□□ -0.18
USHBP1-207ENST00000597928 KLK7P49862 253 aa13.94□□□□□ -0.18
USHBP1-207ENST00000597928 COPB1P53618 953 aaKnown RBP13.94□□□□□ -0.18
USHBP1-207ENST00000597928 ST5P78524 1137 aa13.94□□□□□ -0.18
USHBP1-207ENST00000597928 ENOX1Q8TC92 643 aaKnown RBP13.94□□□□□ -0.18
USHBP1-207ENST00000597928 TMX4Q9H1E5 349 aaPredicted RBP13.94□□□□□ -0.18
USHBP1-207ENST00000597928 TUBE1Q9UJT0 475 aa13.94□□□□□ -0.18
USHBP1-207ENST00000597928 RTCBQ9Y3I0 505 aaKnown RBP13.94□□□□□ -0.18
USHBP1-207ENST00000597928 PRCPP42785 496 aa13.94□□□□□ -0.18
USHBP1-207ENST00000597928 REXO1L1PQ8IX06 675 aa13.94□□□□□ -0.18
USHBP1-207ENST00000597928 AK7Q96M32 723 aa13.94□□□□□ -0.18
USHBP1-207ENST00000597928 RNF26Q9BY78 433 aaPredicted RBP13.94□□□□□ -0.18
USHBP1-207ENST00000597928 DCP1AQ9NPI6 582 aaPredicted RBP13.94□□□□□ -0.18
USHBP1-207ENST00000597928 STX10O60499 249 aa13.93□□□□□ -0.18
USHBP1-207ENST00000597928 TERF2Q15554 542 aa13.93□□□□□ -0.18
USHBP1-207ENST00000597928 CNGA4Q8IV77 575 aa13.93□□□□□ -0.18
USHBP1-207ENST00000597928 SMCR8Q8TEV9 937 aaPredicted RBP13.93□□□□□ -0.18
USHBP1-207ENST00000597928 CCDC42Q96M95 316 aa13.93□□□□□ -0.18
USHBP1-207ENST00000597928 CTAGE1Q96RT6 745 aa13.93□□□□□ -0.18
USHBP1-207ENST00000597928 RUFY1Q96T51 708 aa13.93□□□□□ -0.18
USHBP1-207ENST00000597928 CACNB3P54284 484 aa13.93□□□□□ -0.18
USHBP1-207ENST00000597928 PLS1Q14651 629 aa13.93□□□□□ -0.18
USHBP1-207ENST00000597928 SYCP1Q15431 976 aa13.93□□□□□ -0.18
USHBP1-207ENST00000597928 ZNF34Q8IZ26 560 aa13.93□□□□□ -0.18
USHBP1-207ENST00000597928 MARCH10Q8NA82 808 aaPredicted RBP13.93□□□□□ -0.18
USHBP1-207ENST00000597928 TMEM260Q9NX78 707 aa13.93□□□□□ -0.18
USHBP1-207ENST00000597928 BUB1O43683 1085 aa13.93□□□□□ -0.18
USHBP1-207ENST00000597928 DOK7Q18PE1 504 aa13.93□□□□□ -0.18
USHBP1-207ENST00000597928 CALML4Q96GE6 196 aa13.93□□□□□ -0.18
USHBP1-207ENST00000597928 NAPGQ99747 312 aaPredicted RBP13.93□□□□□ -0.18
USHBP1-207ENST00000597928 ZNF446Q9NWS9 450 aa13.93□□□□□ -0.18
USHBP1-207ENST00000597928 GTF2IP78347 998 aa13.92□□□□□ -0.18
USHBP1-207ENST00000597928 CCDC70Q6NSX1 233 aa13.92□□□□□ -0.18
USHBP1-207ENST00000597928 KRT26Q7Z3Y9 468 aa13.92□□□□□ -0.18
USHBP1-207ENST00000597928 CABP7Q86V35 215 aa13.92□□□□□ -0.18
USHBP1-207ENST00000597928 C2CD5Q86YS7 1000 aa13.92□□□□□ -0.18
USHBP1-207ENST00000597928 HPSEQ9Y251 543 aa13.92□□□□□ -0.18
USHBP1-207ENST00000597928 ZNF804BA4D1E1 1349 aa13.92□□□□□ -0.18
USHBP1-207ENST00000597928 RGPD1P0DJD0 1748 aa13.92□□□□□ -0.18
USHBP1-207ENST00000597928 GOLGA6L9A6NEM1 432 aa13.92□□□□□ -0.18
USHBP1-207ENST00000597928 ACTN4O43707 911 aaKnown RBP13.92□□□□□ -0.18
USHBP1-207ENST00000597928 PARP1P09874 1014 aaKnown RBP13.92□□□□□ -0.18
USHBP1-207ENST00000597928 TMEM60Q9H2L4 133 aa13.92□□□□□ -0.18
USHBP1-207ENST00000597928 RBM28Q9NW13 759 aaKnown RBP13.92□□□□□ -0.18
USHBP1-207ENST00000597928 CALM1P0DP23 149 aa13.92□□□□□ -0.18
USHBP1-207ENST00000597928 CALM2P0DP24 149 aa13.92□□□□□ -0.18
USHBP1-207ENST00000597928 CALM3P0DP25 149 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms