RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 MRPS5P82675 430 aaKnown RBP12.3□□□□□ -0.44
TRIM28-210ENST00000597618 PPIGQ13427 754 aaKnown RBP eCLIP12.3□□□□□ -0.441e-32■□□□□ 10.1
TRIM28-210ENST00000597618 KCTD2Q14681 263 aa12.3□□□□□ -0.44
TRIM28-210ENST00000597618 IL27Q8NEV9 243 aa12.3□□□□□ -0.44
TRIM28-210ENST00000597618 PPM1EQ8WY54 764 aa12.3□□□□□ -0.44
TRIM28-210ENST00000597618 FAM122AQ96E09 287 aa12.3□□□□□ -0.44
TRIM28-210ENST00000597618 UHRF1Q96T88 793 aaPredicted RBP12.3□□□□□ -0.44
TRIM28-210ENST00000597618 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.3□□□□□ -0.447e-13■■□□□ 12.4
TRIM28-210ENST00000597618 RIOK1Q9BRS2 568 aaKnown RBP12.3□□□□□ -0.44
TRIM28-210ENST00000597618 ARHGEF10LQ9HCE6 1279 aa12.3□□□□□ -0.44
TRIM28-210ENST00000597618 TLR7Q9NYK1 1049 aaKnown RBP12.3□□□□□ -0.44
TRIM28-210ENST00000597618 RAPGEFL1Q9UHV5 662 aa12.3□□□□□ -0.44
TRIM28-210ENST00000597618 CNPY2Q9Y2B0 182 aa12.3□□□□□ -0.44
TRIM28-210ENST00000597618 MROH7Q68CQ1 1323 aa12.3□□□□□ -0.44
TRIM28-210ENST00000597618 CHD7Q9P2D1 2997 aa12.3□□□□□ -0.44
TRIM28-210ENST00000597618 MAGEB6P1A0A0J9YX57 407 aa12.29□□□□□ -0.44
TRIM28-210ENST00000597618 WDR46O15213 610 aaKnown RBP12.29□□□□□ -0.44
TRIM28-210ENST00000597618 SURF6O75683 361 aaKnown RBP12.29□□□□□ -0.44
TRIM28-210ENST00000597618 PGK2P07205 417 aa12.29□□□□□ -0.44
TRIM28-210ENST00000597618 ZNF865P0CJ78 1059 aaPredicted RBP12.29□□□□□ -0.44
TRIM28-210ENST00000597618 TRIM27P14373 513 aa12.29□□□□□ -0.44
TRIM28-210ENST00000597618 COPB2P35606 906 aa12.29□□□□□ -0.44
TRIM28-210ENST00000597618 TMEM132BQ14DG7 1078 aa12.29□□□□□ -0.44
TRIM28-210ENST00000597618 ZNF792Q3KQV3 632 aa12.29□□□□□ -0.44
TRIM28-210ENST00000597618 KIAA1755Q5JYT7 1200 aa12.29□□□□□ -0.44
TRIM28-210ENST00000597618 MFSD5Q6N075 450 aa12.29□□□□□ -0.44
TRIM28-210ENST00000597618 CCDC129Q6ZRS4 1044 aa12.29□□□□□ -0.44
TRIM28-210ENST00000597618 SPICE1Q8N0Z3 855 aa12.29□□□□□ -0.44
TRIM28-210ENST00000597618 SSH3Q8TE77 659 aa12.29□□□□□ -0.44
TRIM28-210ENST00000597618 PBX4Q9BYU1 374 aa12.29□□□□□ -0.44
TRIM28-210ENST00000597618 CRNKL1Q9BZJ0 848 aaKnown RBP12.29□□□□□ -0.44
TRIM28-210ENST00000597618 PRDM12Q9H4Q4 367 aa12.29□□□□□ -0.44
TRIM28-210ENST00000597618 VCPKMTQ9H867 229 aa12.29□□□□□ -0.44
TRIM28-210ENST00000597618 MCM9Q9NXL9 1143 aa12.29□□□□□ -0.44
TRIM28-210ENST00000597618 TBX21Q9UL17 535 aa12.29□□□□□ -0.44
TRIM28-210ENST00000597618 TAL1P17542 331 aaPredicted RBP12.28□□□□□ -0.44
TRIM28-210ENST00000597618 ICA1Q05084 483 aa12.28□□□□□ -0.44
TRIM28-210ENST00000597618 RASIP1Q5U651 963 aa12.28□□□□□ -0.44
TRIM28-210ENST00000597618 PSRC1Q6PGN9 363 aaPredicted RBP12.28□□□□□ -0.44
TRIM28-210ENST00000597618 SAMD1Q6SPF0 538 aaPredicted RBP12.28□□□□□ -0.44
TRIM28-210ENST00000597618 RIOX2Q8IUF8 465 aa12.28□□□□□ -0.44
TRIM28-210ENST00000597618 MSL3Q8N5Y2 521 aaKnown RBP12.28□□□□□ -0.44
TRIM28-210ENST00000597618 LENG1Q96BZ8 264 aaPredicted RBP12.28□□□□□ -0.44
TRIM28-210ENST00000597618 SWAP70Q9UH65 585 aa12.28□□□□□ -0.44
TRIM28-210ENST00000597618 TMX2Q9Y320 296 aa12.28□□□□□ -0.44
TRIM28-210ENST00000597618 SYNRGQ9UMZ2 1314 aa12.28□□□□□ -0.44
TRIM28-210ENST00000597618 MYO5AQ9Y4I1 1855 aaKnown RBP12.27□□□□□ -0.44
TRIM28-210ENST00000597618 PBX2P40425 430 aa12.27□□□□□ -0.45
TRIM28-210ENST00000597618 RAB30Q15771 203 aa12.27□□□□□ -0.45
TRIM28-210ENST00000597618 TMEM240Q5SV17 173 aa12.27□□□□□ -0.45
TRIM28-210ENST00000597618 TMEM199Q8N511 208 aa12.27□□□□□ -0.45
TRIM28-210ENST00000597618 KLHDC9Q8NEP7 349 aa12.27□□□□□ -0.45
TRIM28-210ENST00000597618 GLT1D1Q96MS3 346 aa12.27□□□□□ -0.45
TRIM28-210ENST00000597618 CCDC8Q9H0W5 538 aaPredicted RBP12.27□□□□□ -0.45
TRIM28-210ENST00000597618 ANTXR1Q9H6X2 564 aa12.27□□□□□ -0.45
TRIM28-210ENST00000597618 MSRAQ9UJ68 235 aa12.27□□□□□ -0.45
TRIM28-210ENST00000597618 FAM184BQ9ULE4 1060 aa12.27□□□□□ -0.45
TRIM28-210ENST00000597618 ADAMTS5Q9UNA0 930 aa12.27□□□□□ -0.45
TRIM28-210ENST00000597618 NOP58Q9Y2X3 529 aaKnown RBP12.27□□□□□ -0.45
TRIM28-210ENST00000597618 ELP1O95163 1332 aa12.27□□□□□ -0.45
TRIM28-210ENST00000597618 NAV1Q8NEY1 1877 aa12.27□□□□□ -0.45
TRIM28-210ENST00000597618 GRXCR1A8MXD5 290 aa12.26□□□□□ -0.45
TRIM28-210ENST00000597618 CST5P28325 142 aaPredicted RBP12.26□□□□□ -0.45
TRIM28-210ENST00000597618 STAT3P40763 770 aa12.26□□□□□ -0.45
TRIM28-210ENST00000597618 ATP8B2P98198 1209 aa12.26□□□□□ -0.45
TRIM28-210ENST00000597618 EVX2Q03828 476 aa12.26□□□□□ -0.45
TRIM28-210ENST00000597618 TTF1Q15361 905 aaPredicted RBP12.26□□□□□ -0.45
TRIM28-210ENST00000597618 KCNA10Q16322 511 aa12.26□□□□□ -0.45
TRIM28-210ENST00000597618 C16orf59Q7L2K0 433 aa12.26□□□□□ -0.45
TRIM28-210ENST00000597618 PCSK9Q8NBP7 692 aaKnown RBP12.26□□□□□ -0.45
TRIM28-210ENST00000597618 FRAT1Q92837 279 aaPredicted RBP12.26□□□□□ -0.45
TRIM28-210ENST00000597618 EAF2Q96CJ1 260 aaPredicted RBP12.26□□□□□ -0.45
TRIM28-210ENST00000597618 TSPYL2Q9H2G4 693 aaPredicted RBP12.26□□□□□ -0.45
TRIM28-210ENST00000597618 MTIF3Q9H2K0 278 aaKnown RBP12.26□□□□□ -0.45
TRIM28-210ENST00000597618 SYNGAP1Q96PV0 1343 aa12.26□□□□□ -0.45
TRIM28-210ENST00000597618 A0A0U1RQG5 324 aaPredicted RBP12.25□□□□□ -0.45
TRIM28-210ENST00000597618 APBB1O00213 710 aa12.25□□□□□ -0.45
TRIM28-210ENST00000597618 VWA5AO00534 786 aa12.25□□□□□ -0.45
TRIM28-210ENST00000597618 DUSP11O75319 330 aaKnown RBP12.25□□□□□ -0.45
TRIM28-210ENST00000597618 BCAR3O75815 825 aa12.25□□□□□ -0.45
TRIM28-210ENST00000597618 AKR1B1P15121 316 aa12.25□□□□□ -0.45
TRIM28-210ENST00000597618 CSF2RAP15509 400 aa12.25□□□□□ -0.45
TRIM28-210ENST00000597618 IGFBP4P22692 258 aa12.25□□□□□ -0.45
TRIM28-210ENST00000597618 ADGRE1Q14246 886 aa12.25□□□□□ -0.45
TRIM28-210ENST00000597618 CCDC85BQ15834 202 aaPredicted RBP12.25□□□□□ -0.45
TRIM28-210ENST00000597618 SLC9C2Q5TAH2 1124 aa12.25□□□□□ -0.45
TRIM28-210ENST00000597618 CCSAPQ6IQ19 270 aaPredicted RBP12.25□□□□□ -0.45
TRIM28-210ENST00000597618 CLEC10AQ8IUN9 316 aa12.25□□□□□ -0.45
TRIM28-210ENST00000597618 SIAH1Q8IUQ4 282 aa12.25□□□□□ -0.45
TRIM28-210ENST00000597618 CLUAP1Q96AJ1 413 aa12.25□□□□□ -0.45
TRIM28-210ENST00000597618 C1QTNF1Q9BXJ1 281 aa12.25□□□□□ -0.45
TRIM28-210ENST00000597618 DCP1AQ9NPI6 582 aaPredicted RBP12.25□□□□□ -0.45
TRIM28-210ENST00000597618 CXXC1Q9P0U4 656 aaPredicted RBP12.25□□□□□ -0.45
TRIM28-210ENST00000597618 ZHX1Q9UKY1 873 aaPredicted RBP12.25□□□□□ -0.45
TRIM28-210ENST00000597618 ZNF214Q9UL59 606 aaPredicted RBP12.25□□□□□ -0.45
TRIM28-210ENST00000597618 PPP1R9AQ9ULJ8 1098 aa12.25□□□□□ -0.45
TRIM28-210ENST00000597618 TNNQ9UQP3 1299 aa12.25□□□□□ -0.45
TRIM28-210ENST00000597618 SMCHD1A6NHR9 2005 aa12.25□□□□□ -0.45
TRIM28-210ENST00000597618 TLR3O15455 904 aaKnown RBP12.24□□□□□ -0.45
TRIM28-210ENST00000597618 C6orf222P0C671 652 aaPredicted RBP12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms