RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 MACROD2A1Z1Q3 448 aa17.19■□□□□ 0.34
UPF1-204ENST00000596842 CCDC151A5D8V7 595 aa17.19■□□□□ 0.34
UPF1-204ENST00000596842 GSPT2Q8IYD1 628 aaKnown RBP17.19■□□□□ 0.34
UPF1-204ENST00000596842 EXOC5O00471 708 aa17.19■□□□□ 0.34
UPF1-204ENST00000596842 ZNF579Q8NAF0 562 aaKnown RBP17.19■□□□□ 0.34
UPF1-204ENST00000596842 ABHD10Q9NUJ1 306 aa17.19■□□□□ 0.34
UPF1-204ENST00000596842 PHRF1Q9P1Y6 1649 aaKnown RBP17.19■□□□□ 0.34
UPF1-204ENST00000596842 CCDC122Q5T0U0 273 aa17.19■□□□□ 0.34
UPF1-204ENST00000596842 NT5DC1Q5TFE4 455 aa17.19■□□□□ 0.34
UPF1-204ENST00000596842 HDXQ7Z353 690 aa17.19■□□□□ 0.34
UPF1-204ENST00000596842 GSDMAQ96QA5 445 aa17.19■□□□□ 0.34
UPF1-204ENST00000596842 CPVLQ9H3G5 476 aa17.19■□□□□ 0.34
UPF1-204ENST00000596842 XDHP47989 1333 aa17.19■□□□□ 0.34
UPF1-204ENST00000596842 SRBD1Q8N5C6 995 aaKnown RBP17.18■□□□□ 0.34
UPF1-204ENST00000596842 GNL3LQ9NVN8 582 aaKnown RBP17.18■□□□□ 0.34
UPF1-204ENST00000596842 RTL9Q8NET4 1388 aa17.18■□□□□ 0.34
UPF1-204ENST00000596842 TRIM66O15016 1216 aa17.18■□□□□ 0.34
UPF1-204ENST00000596842 TRIM21P19474 475 aaKnown RBP17.18■□□□□ 0.34
UPF1-204ENST00000596842 EIF3JO75822 258 aaKnown RBP17.18■□□□□ 0.34
UPF1-204ENST00000596842 PRCPP42785 496 aa17.18■□□□□ 0.34
UPF1-204ENST00000596842 CYP26C1Q6V0L0 522 aa17.18■□□□□ 0.34
UPF1-204ENST00000596842 ZNF512BQ96KM6 892 aaPredicted RBP17.18■□□□□ 0.34
UPF1-204ENST00000596842 JADE2Q9NQC1 790 aa17.18■□□□□ 0.34
UPF1-204ENST00000596842 MAGEC2Q9UBF1 373 aaPredicted RBP17.18■□□□□ 0.34
UPF1-204ENST00000596842 IPO7O95373 1038 aaKnown RBP17.17■□□□□ 0.34
UPF1-204ENST00000596842 CCDC178Q5BJE1 867 aa17.17■□□□□ 0.34
UPF1-204ENST00000596842 CAVIN4Q5BKX8 364 aa17.17■□□□□ 0.34
UPF1-204ENST00000596842 FERMT2Q96AC1 680 aa17.17■□□□□ 0.34
UPF1-204ENST00000596842 PHF20Q9BVI0 1012 aa17.17■□□□□ 0.34
UPF1-204ENST00000596842 VAT1LQ9HCJ6 419 aa17.17■□□□□ 0.34
UPF1-204ENST00000596842 SLAIN2Q9P270 581 aa17.17■□□□□ 0.34
UPF1-204ENST00000596842 UBA7P41226 1012 aa17.17■□□□□ 0.34
UPF1-204ENST00000596842 PPARDQ03181 441 aa17.17■□□□□ 0.34
UPF1-204ENST00000596842 KIF1AQ12756 1690 aa17.17■□□□□ 0.34
UPF1-204ENST00000596842 APTXQ7Z2E3 356 aaKnown RBP17.17■□□□□ 0.34
UPF1-204ENST00000596842 TMTC1Q8IUR5 882 aa17.17■□□□□ 0.34
UPF1-204ENST00000596842 MYO6Q9UM54 1294 aa17.17■□□□□ 0.34
UPF1-204ENST00000596842 STX8Q9UNK0 236 aa17.17■□□□□ 0.34
UPF1-204ENST00000596842 TTF2Q9UNY4 1162 aaKnown RBP17.17■□□□□ 0.34
UPF1-204ENST00000596842 LUC7L2Q9Y383 392 aaKnown RBP17.17■□□□□ 0.34
UPF1-204ENST00000596842 CYP27A1Q02318 531 aa17.17■□□□□ 0.34
UPF1-204ENST00000596842 BRD3Q15059 726 aa17.17■□□□□ 0.34
UPF1-204ENST00000596842 HEATR3Q7Z4Q2 680 aa17.17■□□□□ 0.34
UPF1-204ENST00000596842 UIMC1Q96RL1 719 aa17.17■□□□□ 0.34
UPF1-204ENST00000596842 EPN1Q9Y6I3 576 aaPredicted RBP17.17■□□□□ 0.34
UPF1-204ENST00000596842 CCDC194A0A1B0GVG4 234 aa17.16■□□□□ 0.34
UPF1-204ENST00000596842 TTC26A0AVF1 554 aa17.16■□□□□ 0.34
UPF1-204ENST00000596842 RPN1P04843 607 aaKnown RBP17.16■□□□□ 0.34
UPF1-204ENST00000596842 KCPQ6ZWJ8 1503 aa17.16■□□□□ 0.34
UPF1-204ENST00000596842 SEC23AQ15436 765 aa17.16■□□□□ 0.34
UPF1-204ENST00000596842 RIN2Q8WYP3 895 aaPredicted RBP17.16■□□□□ 0.34
UPF1-204ENST00000596842 MCM9Q9NXL9 1143 aa17.16■□□□□ 0.34
UPF1-204ENST00000596842 GOLGA8HP0CJ92 632 aa17.16■□□□□ 0.34
UPF1-204ENST00000596842 CASP8Q14790 479 aa17.16■□□□□ 0.34
UPF1-204ENST00000596842 TCP11X2Q5H9J9 407 aa17.16■□□□□ 0.34
UPF1-204ENST00000596842 RASGRP2Q7LDG7 609 aa17.16■□□□□ 0.34
UPF1-204ENST00000596842 NAA15Q9BXJ9 866 aaKnown RBP17.16■□□□□ 0.34
UPF1-204ENST00000596842 LCMT1Q9UIC8 334 aa17.16■□□□□ 0.34
UPF1-204ENST00000596842 TRPM3Q9HCF6 1732 aaPredicted RBP17.16■□□□□ 0.34
UPF1-204ENST00000596842 B4DLN1 442 aa17.15■□□□□ 0.34
UPF1-204ENST00000596842 INF2Q27J81 1249 aa17.15■□□□□ 0.34
UPF1-204ENST00000596842 KLK7P49862 253 aa17.15■□□□□ 0.34
UPF1-204ENST00000596842 BEND6Q5SZJ8 279 aaPredicted RBP17.15■□□□□ 0.34
UPF1-204ENST00000596842 CCDC148Q8NFR7 591 aa17.15■□□□□ 0.34
UPF1-204ENST00000596842 PRPF3O43395 683 aaKnown RBP17.15■□□□□ 0.34
UPF1-204ENST00000596842 PARP1P09874 1014 aaKnown RBP17.15■□□□□ 0.34
UPF1-204ENST00000596842 KLRK1P26718 216 aa17.15■□□□□ 0.34
UPF1-204ENST00000596842 CDKAL1Q5VV42 579 aa17.15■□□□□ 0.34
UPF1-204ENST00000596842 ANKRD18AQ8IVF6 992 aa17.15■□□□□ 0.34
UPF1-204ENST00000596842 MTRQ99707 1265 aa17.15■□□□□ 0.34
UPF1-204ENST00000596842 TJP1Q07157 1748 aa17.15■□□□□ 0.34
UPF1-204ENST00000596842 SCG2P13521 617 aa17.14■□□□□ 0.33
UPF1-204ENST00000596842 PMS1P54277 932 aaKnown RBP17.14■□□□□ 0.33
UPF1-204ENST00000596842 TROAPQ12815 778 aa17.14■□□□□ 0.33
UPF1-204ENST00000596842 HPS3Q969F9 1004 aa17.14■□□□□ 0.33
UPF1-204ENST00000596842 NDUFA10O95299 355 aa17.14■□□□□ 0.33
UPF1-204ENST00000596842 ADAMTS2O95450 1211 aa17.14■□□□□ 0.33
UPF1-204ENST00000596842 CRKLP46109 303 aaKnown RBP17.14■□□□□ 0.33
UPF1-204ENST00000596842 MTIF2P46199 727 aaKnown RBP17.14■□□□□ 0.33
UPF1-204ENST00000596842 ENOX2Q16206 610 aaKnown RBP17.14■□□□□ 0.33
UPF1-204ENST00000596842 FOXR1Q6PIV2 292 aa17.14■□□□□ 0.33
UPF1-204ENST00000596842 ADAMTS7Q9UKP4 1686 aa17.14■□□□□ 0.33
UPF1-204ENST00000596842 ZNF185O15231 689 aa17.14■□□□□ 0.33
UPF1-204ENST00000596842 NAP1L1P55209 391 aaKnown RBP17.14■□□□□ 0.33
UPF1-204ENST00000596842 PRDX5P30044 214 aa17.13■□□□□ 0.33
UPF1-204ENST00000596842 PIP4K2BP78356 416 aa17.13■□□□□ 0.33
UPF1-204ENST00000596842 IL17AQ16552 155 aa17.13■□□□□ 0.33
UPF1-204ENST00000596842 DNAJC21Q5F1R6 531 aaKnown RBP17.13■□□□□ 0.33
UPF1-204ENST00000596842 TMTC3Q6ZXV5 915 aa17.13■□□□□ 0.33
UPF1-204ENST00000596842 ZNF34Q8IZ26 560 aa17.13■□□□□ 0.33
UPF1-204ENST00000596842 KAT14Q9H8E8 782 aa17.13■□□□□ 0.33
UPF1-204ENST00000596842 DUSP10Q9Y6W6 482 aa17.13■□□□□ 0.33
UPF1-204ENST00000596842 ATP8B1O43520 1251 aa17.13■□□□□ 0.33
UPF1-204ENST00000596842 ATP1A1P05023 1023 aaKnown RBP17.13■□□□□ 0.33
UPF1-204ENST00000596842 CTR9Q6PD62 1173 aa17.13■□□□□ 0.33
UPF1-204ENST00000596842 STAG2Q8N3U4 1231 aa17.13■□□□□ 0.33
UPF1-204ENST00000596842 SPATA20Q8TB22 786 aa17.13■□□□□ 0.33
UPF1-204ENST00000596842 DYNLL2Q96FJ2 89 aa17.13■□□□□ 0.33
UPF1-204ENST00000596842 AKAP11Q9UKA4 1901 aa17.13■□□□□ 0.33
UPF1-204ENST00000596842 COL5A2P05997 1499 aaPredicted RBP17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms