RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 ZNF214Q9UL59 606 aaPredicted RBP12.55□□□□□ -0.4
LIG1-213ENST00000596672 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.55□□□□□ -0.4
LIG1-213ENST00000596672 MCM3APO60318 1980 aa12.55□□□□□ -0.4
LIG1-213ENST00000596672 PLXNA1Q9UIW2 1896 aa12.55□□□□□ -0.4
LIG1-213ENST00000596672 A0A0D9SFI3 127 aa12.54□□□□□ -0.4
LIG1-213ENST00000596672 WDR46O15213 610 aaKnown RBP12.54□□□□□ -0.4
LIG1-213ENST00000596672 ADORA2AP29274 412 aa12.54□□□□□ -0.4
LIG1-213ENST00000596672 CTDSPL2Q05D32 466 aa12.54□□□□□ -0.4
LIG1-213ENST00000596672 FAM47AQ5JRC9 791 aa12.54□□□□□ -0.4
LIG1-213ENST00000596672 PRAMEF19Q5SWL8 479 aa12.54□□□□□ -0.4
LIG1-213ENST00000596672 WDR78Q5VTH9 848 aa12.54□□□□□ -0.4
LIG1-213ENST00000596672 SAMD1Q6SPF0 538 aaPredicted RBP12.54□□□□□ -0.4
LIG1-213ENST00000596672 CHRDL2Q6WN34 429 aa12.54□□□□□ -0.4
LIG1-213ENST00000596672 ZNF589Q86UQ0 364 aaPredicted RBP12.54□□□□□ -0.4
LIG1-213ENST00000596672 LPAR1Q92633 364 aa12.54□□□□□ -0.4
LIG1-213ENST00000596672 CEP95Q96GE4 821 aa12.54□□□□□ -0.4
LIG1-213ENST00000596672 GPATCH3Q96I76 525 aa12.54□□□□□ -0.4
LIG1-213ENST00000596672 ARHGEF10LQ9HCE6 1279 aa12.54□□□□□ -0.4
LIG1-213ENST00000596672 NYAP2Q9P242 653 aa12.54□□□□□ -0.4
LIG1-213ENST00000596672 RBM27Q9P2N5 1060 aaKnown RBP12.54□□□□□ -0.4
LIG1-213ENST00000596672 PPP1R9AQ9ULJ8 1098 aa12.54□□□□□ -0.4
LIG1-213ENST00000596672 RIPK3Q9Y572 518 aa12.54□□□□□ -0.4
LIG1-213ENST00000596672 F5H6K3 240 aa12.53□□□□□ -0.4
LIG1-213ENST00000596672 VWA5AO00534 786 aa12.53□□□□□ -0.4
LIG1-213ENST00000596672 ERC2O15083 957 aa12.53□□□□□ -0.4
LIG1-213ENST00000596672 NMT2O60551 498 aa12.53□□□□□ -0.4
LIG1-213ENST00000596672 TDO2P48775 406 aa12.53□□□□□ -0.4
LIG1-213ENST00000596672 KLRC3Q07444 240 aa12.53□□□□□ -0.4
LIG1-213ENST00000596672 PPARAQ07869 468 aa12.53□□□□□ -0.4
LIG1-213ENST00000596672 SHCBP1Q8NEM2 672 aa12.53□□□□□ -0.4
LIG1-213ENST00000596672 MKL1Q969V6 931 aa12.53□□□□□ -0.4
LIG1-213ENST00000596672 NBPF3Q9H094 633 aa12.53□□□□□ -0.4
LIG1-213ENST00000596672 IL17RBQ9NRM6 502 aa12.53□□□□□ -0.4
LIG1-213ENST00000596672 MTMR4Q9NYA4 1195 aa12.53□□□□□ -0.4
LIG1-213ENST00000596672 CLIP2Q9UDT6 1046 aa12.53□□□□□ -0.4
LIG1-213ENST00000596672 APPP05067 770 aa12.52□□□□□ -0.41
LIG1-213ENST00000596672 PGK2P07205 417 aa12.52□□□□□ -0.41
LIG1-213ENST00000596672 CYBAP13498 195 aa12.52□□□□□ -0.41
LIG1-213ENST00000596672 TAL1P17542 331 aaPredicted RBP12.52□□□□□ -0.41
LIG1-213ENST00000596672 CCNA1P78396 465 aa12.52□□□□□ -0.41
LIG1-213ENST00000596672 B4GALNT3Q6L9W6 998 aa12.52□□□□□ -0.41
LIG1-213ENST00000596672 PLEKHM2Q8IWE5 1019 aa12.52□□□□□ -0.41
LIG1-213ENST00000596672 LRRC47Q8N1G4 583 aaKnown RBP12.52□□□□□ -0.41
LIG1-213ENST00000596672 NEDD1Q8NHV4 660 aa12.52□□□□□ -0.41
LIG1-213ENST00000596672 CHMP4CQ96CF2 233 aa12.52□□□□□ -0.41
LIG1-213ENST00000596672 GCC1Q96CN9 775 aa12.52□□□□□ -0.41
LIG1-213ENST00000596672 MKNK2Q9HBH9 465 aa12.52□□□□□ -0.41
LIG1-213ENST00000596672 PLIN4Q96Q06 1357 aa12.52□□□□□ -0.41
LIG1-213ENST00000596672 GNAT2P19087 354 aa12.51□□□□□ -0.41
LIG1-213ENST00000596672 TFAP4Q01664 338 aa12.51□□□□□ -0.41
LIG1-213ENST00000596672 NMIQ13287 307 aaPredicted RBP12.51□□□□□ -0.41
LIG1-213ENST00000596672 PLS1Q14651 629 aa12.51□□□□□ -0.41
LIG1-213ENST00000596672 LRRC26Q2I0M4 334 aa12.51□□□□□ -0.41
LIG1-213ENST00000596672 ANO1Q5XXA6 986 aa12.51□□□□□ -0.41
LIG1-213ENST00000596672 NECAB2Q7Z6G3 386 aa12.51□□□□□ -0.41
LIG1-213ENST00000596672 NCAPG2Q86XI2 1143 aa12.51□□□□□ -0.41
LIG1-213ENST00000596672 CCAR1Q8IX12 1150 aaKnown RBP12.51□□□□□ -0.41
LIG1-213ENST00000596672 ANKLE1Q8NAG6 615 aa12.51□□□□□ -0.41
LIG1-213ENST00000596672 DDRGK1Q96HY6 314 aa12.51□□□□□ -0.41
LIG1-213ENST00000596672 FGD4Q96M96 766 aa12.51□□□□□ -0.41
LIG1-213ENST00000596672 IL25Q9H293 177 aa12.51□□□□□ -0.41
LIG1-213ENST00000596672 RAD21O60216 631 aa12.5□□□□□ -0.41
LIG1-213ENST00000596672 FGRP09769 529 aa12.5□□□□□ -0.41
LIG1-213ENST00000596672 PDE4AP27815 886 aa12.5□□□□□ -0.41
LIG1-213ENST00000596672 STAT3P40763 770 aa12.5□□□□□ -0.41
LIG1-213ENST00000596672 NOVP48745 357 aa12.5□□□□□ -0.41
LIG1-213ENST00000596672 NUCB1Q02818 461 aa12.5□□□□□ -0.41
LIG1-213ENST00000596672 ZNF792Q3KQV3 632 aa12.5□□□□□ -0.41
LIG1-213ENST00000596672 RIOX2Q8IUF8 465 aa12.5□□□□□ -0.41
LIG1-213ENST00000596672 AMOTL1Q8IY63 956 aa12.5□□□□□ -0.41
LIG1-213ENST00000596672 TRMT44Q8IYL2 757 aaKnown RBP12.5□□□□□ -0.41
LIG1-213ENST00000596672 MB21D1Q8N884 522 aa12.5□□□□□ -0.41
LIG1-213ENST00000596672 EVI5LQ96CN4 794 aa12.5□□□□□ -0.41
LIG1-213ENST00000596672 MAML3Q96JK9 1138 aa12.5□□□□□ -0.41
LIG1-213ENST00000596672 HTATIP2Q9BUP3 242 aa12.5□□□□□ -0.41
LIG1-213ENST00000596672 C11orf49Q9H6J7 331 aa12.5□□□□□ -0.41
LIG1-213ENST00000596672 SH2D4AQ9H788 454 aa12.5□□□□□ -0.41
LIG1-213ENST00000596672 ZMYND8Q9ULU4 1186 aaPredicted RBP12.5□□□□□ -0.41
LIG1-213ENST00000596672 SUPT16HQ9Y5B9 1047 aaKnown RBP12.5□□□□□ -0.41
LIG1-213ENST00000596672 LCTP09848 1927 aa12.5□□□□□ -0.41
LIG1-213ENST00000596672 SOX1O00570 391 aaPredicted RBP12.49□□□□□ -0.41
LIG1-213ENST00000596672 STRNO43815 780 aa12.49□□□□□ -0.41
LIG1-213ENST00000596672 EVI5O60447 810 aa12.49□□□□□ -0.41
LIG1-213ENST00000596672 FGAP02671 866 aa12.49□□□□□ -0.41
LIG1-213ENST00000596672 SYN1P17600 705 aa12.49□□□□□ -0.41
LIG1-213ENST00000596672 ALX1Q15699 326 aa12.49□□□□□ -0.41
LIG1-213ENST00000596672 MFSD14CQ5VZR4 134 aa12.49□□□□□ -0.41
LIG1-213ENST00000596672 OLFML2BQ68BL8 750 aa12.49□□□□□ -0.41
LIG1-213ENST00000596672 C7orf61Q8IZ16 206 aa12.49□□□□□ -0.41
LIG1-213ENST00000596672 SLF1Q9BQI6 1058 aa12.49□□□□□ -0.41
LIG1-213ENST00000596672 NAPBQ9H115 298 aa12.49□□□□□ -0.41
LIG1-213ENST00000596672 MROH8Q9H579 483 aa12.49□□□□□ -0.41
LIG1-213ENST00000596672 GOPCQ9HD26 462 aa12.49□□□□□ -0.41
LIG1-213ENST00000596672 DDX20Q9UHI6 824 aaKnown RBP12.49□□□□□ -0.41
LIG1-213ENST00000596672 ANAPC4Q9UJX5 808 aa12.49□□□□□ -0.41
LIG1-213ENST00000596672 DDX49Q9Y6V7 483 aaKnown RBP12.49□□□□□ -0.41
LIG1-213ENST00000596672 COL6A3P12111 3177 aa12.48□□□□□ -0.41
LIG1-213ENST00000596672 ZNF536O15090 1300 aa12.48□□□□□ -0.41
LIG1-213ENST00000596672 DNAJC25-GNG10A0A024R161 153 aa12.48□□□□□ -0.41
LIG1-213ENST00000596672 SNAP25P60880 206 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms