RNA–Protein interactions for RNA: ENST00000595874.1

SHKBP1-210, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 203 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-210ENST00000595874 GOPCQ9HD26 462 aa12.29□□□□□ -0.44
SHKBP1-210ENST00000595874 TOMM22Q9NS69 142 aa12.29□□□□□ -0.44
SHKBP1-210ENST00000595874 ZMYND8Q9ULU4 1186 aaPredicted RBP12.29□□□□□ -0.44
SHKBP1-210ENST00000595874 PARP14Q460N5 1801 aa12.29□□□□□ -0.44
SHKBP1-210ENST00000595874 RPTORQ8N122 1335 aa12.29□□□□□ -0.44
SHKBP1-210ENST00000595874 A0A0G2JMZ2 1700 aa12.28□□□□□ -0.44
SHKBP1-210ENST00000595874 WDR46O15213 610 aaKnown RBP12.28□□□□□ -0.44
SHKBP1-210ENST00000595874 FOXP2O15409 715 aa12.28□□□□□ -0.44
SHKBP1-210ENST00000595874 NMT2O60551 498 aa12.28□□□□□ -0.44
SHKBP1-210ENST00000595874 COBLO75128 1261 aa12.28□□□□□ -0.44
SHKBP1-210ENST00000595874 NDUFB10O96000 172 aa12.28□□□□□ -0.44
SHKBP1-210ENST00000595874 SYN1P17600 705 aa12.28□□□□□ -0.44
SHKBP1-210ENST00000595874 GNAT2P19087 354 aa12.28□□□□□ -0.44
SHKBP1-210ENST00000595874 HAND2P61296 217 aa12.28□□□□□ -0.44
SHKBP1-210ENST00000595874 TFAP4Q01664 338 aa12.28□□□□□ -0.44
SHKBP1-210ENST00000595874 LRRFIP1Q32MZ4 808 aaKnown RBP12.28□□□□□ -0.44
SHKBP1-210ENST00000595874 CPXCR1Q8N123 301 aa12.28□□□□□ -0.44
SHKBP1-210ENST00000595874 TRPV1Q8NER1 839 aa12.28□□□□□ -0.44
SHKBP1-210ENST00000595874 KIFC2Q96AC6 838 aa12.28□□□□□ -0.44
SHKBP1-210ENST00000595874 CEP95Q96GE4 821 aa12.28□□□□□ -0.44
SHKBP1-210ENST00000595874 NACAP1Q9BZK3 213 aa12.28□□□□□ -0.44
SHKBP1-210ENST00000595874 RWDD1Q9H446 243 aaPredicted RBP12.28□□□□□ -0.44
SHKBP1-210ENST00000595874 HOXC10Q9NYD6 342 aa12.28□□□□□ -0.44
SHKBP1-210ENST00000595874 ALPK3Q96L96 1907 aa12.28□□□□□ -0.44
SHKBP1-210ENST00000595874 GREB1LQ9C091 1923 aaPredicted RBP12.27□□□□□ -0.44
SHKBP1-210ENST00000595874 SLC15A5A6NIM6 579 aa12.27□□□□□ -0.45
SHKBP1-210ENST00000595874 F5H6K3 240 aa12.27□□□□□ -0.45
SHKBP1-210ENST00000595874 EVI5O60447 810 aa12.27□□□□□ -0.45
SHKBP1-210ENST00000595874 TSPY3P0CV98 308 aa12.27□□□□□ -0.45
SHKBP1-210ENST00000595874 TSPY8P0CW00 308 aa12.27□□□□□ -0.45
SHKBP1-210ENST00000595874 TAL1P17542 331 aaPredicted RBP12.27□□□□□ -0.45
SHKBP1-210ENST00000595874 KLRC3Q07444 240 aa12.27□□□□□ -0.45
SHKBP1-210ENST00000595874 GRB14Q14449 540 aa12.27□□□□□ -0.45
SHKBP1-210ENST00000595874 HABP4Q5JVS0 413 aaKnown RBP12.27□□□□□ -0.45
SHKBP1-210ENST00000595874 MFSD14CQ5VZR4 134 aa12.27□□□□□ -0.45
SHKBP1-210ENST00000595874 ZNF589Q86UQ0 364 aaPredicted RBP12.27□□□□□ -0.45
SHKBP1-210ENST00000595874 EVI5LQ96CN4 794 aa12.27□□□□□ -0.45
SHKBP1-210ENST00000595874 HTATIP2Q9BUP3 242 aa12.27□□□□□ -0.45
SHKBP1-210ENST00000595874 BRCA2P51587 3418 aa12.27□□□□□ -0.45
SHKBP1-210ENST00000595874 PDE4DIPQ5VU43 2346 aa12.26□□□□□ -0.45
SHKBP1-210ENST00000595874 IKQ13123 557 aaPredicted RBP12.26□□□□□ -0.45
SHKBP1-210ENST00000595874 SLFN13Q68D06 897 aa12.26□□□□□ -0.45
SHKBP1-210ENST00000595874 GIMAP6Q6P9H5 292 aa12.26□□□□□ -0.45
SHKBP1-210ENST00000595874 NECAB2Q7Z6G3 386 aa12.26□□□□□ -0.45
SHKBP1-210ENST00000595874 UBE2Q1Q7Z7E8 422 aa12.26□□□□□ -0.45
SHKBP1-210ENST00000595874 CHD1LQ86WJ1 897 aa12.26□□□□□ -0.45
SHKBP1-210ENST00000595874 LPAR1Q92633 364 aa12.26□□□□□ -0.45
SHKBP1-210ENST00000595874 MMP19Q99542 508 aa12.26□□□□□ -0.45
SHKBP1-210ENST00000595874 CRISPLD2Q9H0B8 497 aa12.26□□□□□ -0.45
SHKBP1-210ENST00000595874 C11orf49Q9H6J7 331 aa12.26□□□□□ -0.45
SHKBP1-210ENST00000595874 RAVER2Q9HCJ3 691 aaKnown RBP12.26□□□□□ -0.45
SHKBP1-210ENST00000595874 STAP2Q9UGK3 403 aa12.26□□□□□ -0.45
SHKBP1-210ENST00000595874 CTDP1Q9Y5B0 961 aaPredicted RBP12.26□□□□□ -0.45
SHKBP1-210ENST00000595874 ROBO3Q96MS0 1386 aa12.26□□□□□ -0.45
SHKBP1-210ENST00000595874 FRMPD3Q5JV73 1810 aa12.25□□□□□ -0.45
SHKBP1-210ENST00000595874 IGKV6D-41A0A0C4DH26 115 aa12.25□□□□□ -0.45
SHKBP1-210ENST00000595874 TSPY2A6NKD2 308 aa12.25□□□□□ -0.45
SHKBP1-210ENST00000595874 RANBP6O60518 1105 aaKnown RBP12.25□□□□□ -0.45
SHKBP1-210ENST00000595874 XRCC5P13010 732 aaKnown RBP12.25□□□□□ -0.45
SHKBP1-210ENST00000595874 MNX1P50219 401 aaPredicted RBP12.25□□□□□ -0.45
SHKBP1-210ENST00000595874 ATN1P54259 1190 aaPredicted RBP12.25□□□□□ -0.45
SHKBP1-210ENST00000595874 PDE4BQ07343 736 aa12.25□□□□□ -0.45
SHKBP1-210ENST00000595874 GJC2Q5T442 439 aaPredicted RBP12.25□□□□□ -0.45
SHKBP1-210ENST00000595874 MAP3K21Q5TCX8 1036 aa12.25□□□□□ -0.45
SHKBP1-210ENST00000595874 PLEKHM2Q8IWE5 1019 aa12.25□□□□□ -0.45
SHKBP1-210ENST00000595874 HOMER2Q9NSB8 354 aa12.25□□□□□ -0.45
SHKBP1-210ENST00000595874 NYAP2Q9P242 653 aa12.25□□□□□ -0.45
SHKBP1-210ENST00000595874 PPP1R9AQ9ULJ8 1098 aa12.25□□□□□ -0.45
SHKBP1-210ENST00000595874 STX8Q9UNK0 236 aa12.25□□□□□ -0.45
SHKBP1-210ENST00000595874 ZNFX1Q9P2E3 1918 aaKnown RBP12.25□□□□□ -0.45
SHKBP1-210ENST00000595874 TMEM232C9JQI7 657 aa12.24□□□□□ -0.45
SHKBP1-210ENST00000595874 VWA5AO00534 786 aa12.24□□□□□ -0.45
SHKBP1-210ENST00000595874 SLC34A2O95436 690 aa12.24□□□□□ -0.45
SHKBP1-210ENST00000595874 SLC3A2P08195 630 aaKnown RBP12.24□□□□□ -0.45
SHKBP1-210ENST00000595874 MCCP23508 829 aa12.24□□□□□ -0.45
SHKBP1-210ENST00000595874 STAT3P40763 770 aa12.24□□□□□ -0.45
SHKBP1-210ENST00000595874 MKI67P46013 3256 aaKnown RBP12.24□□□□□ -0.45
SHKBP1-210ENST00000595874 MCMDC2Q4G0Z9 681 aa12.24□□□□□ -0.45
SHKBP1-210ENST00000595874 LHX8Q68G74 356 aa12.24□□□□□ -0.45
SHKBP1-210ENST00000595874 SNRNP48Q6IEG0 339 aaKnown RBP12.24□□□□□ -0.45
SHKBP1-210ENST00000595874 CCDC174Q6PII3 467 aa12.24□□□□□ -0.45
SHKBP1-210ENST00000595874 KCTD1Q719H9 257 aa12.24□□□□□ -0.45
SHKBP1-210ENST00000595874 SMC5Q8IY18 1101 aa12.24□□□□□ -0.45
SHKBP1-210ENST00000595874 LENG1Q96BZ8 264 aaPredicted RBP12.24□□□□□ -0.45
SHKBP1-210ENST00000595874 SLF1Q9BQI6 1058 aa12.24□□□□□ -0.45
SHKBP1-210ENST00000595874 NBPF3Q9H094 633 aa12.24□□□□□ -0.45
SHKBP1-210ENST00000595874 MTMR4Q9NYA4 1195 aa12.24□□□□□ -0.45
SHKBP1-210ENST00000595874 RBM27Q9P2N5 1060 aaKnown RBP12.24□□□□□ -0.45
SHKBP1-210ENST00000595874 RIPK3Q9Y572 518 aa12.24□□□□□ -0.45
SHKBP1-210ENST00000595874 PFASO15067 1338 aa12.23□□□□□ -0.45
SHKBP1-210ENST00000595874 FRMPD2Q68DX3 1309 aaPredicted RBP12.23□□□□□ -0.45
SHKBP1-210ENST00000595874 TTLL1O95922 423 aa12.23□□□□□ -0.45
SHKBP1-210ENST00000595874 FCER1AP12319 257 aa12.23□□□□□ -0.45
SHKBP1-210ENST00000595874 SDSP20132 328 aa12.23□□□□□ -0.45
SHKBP1-210ENST00000595874 NUCB1Q02818 461 aa12.23□□□□□ -0.45
SHKBP1-210ENST00000595874 CWC27Q6UX04 472 aaKnown RBP12.23□□□□□ -0.45
SHKBP1-210ENST00000595874 TRMT44Q8IYL2 757 aaKnown RBP12.23□□□□□ -0.45
SHKBP1-210ENST00000595874 MB21D1Q8N884 522 aa12.23□□□□□ -0.45
SHKBP1-210ENST00000595874 REPS2Q8NFH8 660 aa12.23□□□□□ -0.45
SHKBP1-210ENST00000595874 NEDD1Q8NHV4 660 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms