RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 TOP1P11387 765 aaKnown RBP17.7■□□□□ 0.42
UPF1-202ENST00000594243 MAPK4P31152 587 aa17.7■□□□□ 0.42
UPF1-202ENST00000594243 DGKHQ86XP1 1220 aa17.7■□□□□ 0.42
UPF1-202ENST00000594243 GMCL1Q96IK5 515 aa17.7■□□□□ 0.42
UPF1-202ENST00000594243 ZSWIM5Q9P217 1185 aa17.7■□□□□ 0.42
UPF1-202ENST00000594243 CNMDO75829 334 aa17.69■□□□□ 0.42
UPF1-202ENST00000594243 BMP3P12645 472 aa17.69■□□□□ 0.42
UPF1-202ENST00000594243 SLC1A4P43007 532 aa17.69■□□□□ 0.42
UPF1-202ENST00000594243 POTEEQ6S8J3 1075 aa17.69■□□□□ 0.42
UPF1-202ENST00000594243 PRPF38AQ8NAV1 312 aaKnown RBP17.69■□□□□ 0.42
UPF1-202ENST00000594243 NUP88Q99567 741 aaPredicted RBP17.69■□□□□ 0.42
UPF1-202ENST00000594243 TMEM47Q9BQJ4 181 aa17.69■□□□□ 0.42
UPF1-202ENST00000594243 BTBD7Q9P203 1132 aa17.69■□□□□ 0.42
UPF1-202ENST00000594243 FEM1BQ9UK73 627 aa17.69■□□□□ 0.42
UPF1-202ENST00000594243 PPP1R9AQ9ULJ8 1098 aa17.69■□□□□ 0.42
UPF1-202ENST00000594243 ADAMTS5Q9UNA0 930 aa17.69■□□□□ 0.42
UPF1-202ENST00000594243 LAMA4Q16363 1823 aa17.69■□□□□ 0.42
UPF1-202ENST00000594243 E7EWF7 191 aa17.68■□□□□ 0.42
UPF1-202ENST00000594243 PEX10O60683 326 aa17.68■□□□□ 0.42
UPF1-202ENST00000594243 SAMD1Q6SPF0 538 aaPredicted RBP17.68■□□□□ 0.42
UPF1-202ENST00000594243 RALYLQ86SE5 291 aaKnown RBP17.68■□□□□ 0.42
UPF1-202ENST00000594243 NBPF11Q86T75 865 aa17.68■□□□□ 0.42
UPF1-202ENST00000594243 NCOA7Q8NI08 942 aa17.68■□□□□ 0.42
UPF1-202ENST00000594243 RAET1EQ8TD07 263 aa17.68■□□□□ 0.42
UPF1-202ENST00000594243 ATG4CQ96DT6 458 aa17.68■□□□□ 0.42
UPF1-202ENST00000594243 ZSCAN10Q96SZ4 725 aaPredicted RBP17.68■□□□□ 0.42
UPF1-202ENST00000594243 SLF1Q9BQI6 1058 aa17.68■□□□□ 0.42
UPF1-202ENST00000594243 ZKSCAN3Q9BRR0 538 aa17.68■□□□□ 0.42
UPF1-202ENST00000594243 CWC22Q9HCG8 908 aaKnown RBP17.68■□□□□ 0.42
UPF1-202ENST00000594243 FBXO28Q9NVF7 368 aa17.68■□□□□ 0.42
UPF1-202ENST00000594243 PTCH2Q9Y6C5 1203 aa17.68■□□□□ 0.42
UPF1-202ENST00000594243 MCCP23508 829 aa17.67■□□□□ 0.42
UPF1-202ENST00000594243 PRKCZQ05513 592 aa17.67■□□□□ 0.42
UPF1-202ENST00000594243 NECTIN1Q15223 517 aa17.67■□□□□ 0.42
UPF1-202ENST00000594243 RNF20Q5VTR2 975 aa17.67■□□□□ 0.42
UPF1-202ENST00000594243 RCSD1Q6JBY9 416 aa17.67■□□□□ 0.42
UPF1-202ENST00000594243 NKX2-3Q8TAU0 364 aa17.67■□□□□ 0.42
UPF1-202ENST00000594243 CHURC1Q8WUH1 139 aa17.67■□□□□ 0.42
UPF1-202ENST00000594243 UBAC1Q9BSL1 405 aa17.67■□□□□ 0.42
UPF1-202ENST00000594243 SPATC1LQ9H0A9 340 aa17.67■□□□□ 0.42
UPF1-202ENST00000594243 ISY1Q9ULR0 285 aaKnown RBP17.67■□□□□ 0.42
UPF1-202ENST00000594243 MYH4Q9Y623 1939 aa17.66■□□□□ 0.42
UPF1-202ENST00000594243 TMEM232C9JQI7 657 aa17.66■□□□□ 0.42
UPF1-202ENST00000594243 VWA5AO00534 786 aa17.66■□□□□ 0.42
UPF1-202ENST00000594243 FDX1P10109 184 aa17.66■□□□□ 0.42
UPF1-202ENST00000594243 FLT3LGP49771 235 aa17.66■□□□□ 0.42
UPF1-202ENST00000594243 STAT2P52630 851 aa17.66■□□□□ 0.42
UPF1-202ENST00000594243 PLS1Q14651 629 aa17.66■□□□□ 0.42
UPF1-202ENST00000594243 SLC9C1Q4G0N8 1177 aa17.66■□□□□ 0.42
UPF1-202ENST00000594243 FAM160B2Q86V87 743 aa17.66■□□□□ 0.42
UPF1-202ENST00000594243 DCAF4Q8WV16 495 aa17.66■□□□□ 0.42
UPF1-202ENST00000594243 ANKS1AQ92625 1134 aa17.66■□□□□ 0.42
UPF1-202ENST00000594243 PORCNQ9H237 461 aa17.66■□□□□ 0.42
UPF1-202ENST00000594243 GABRQQ9UN88 632 aa17.66■□□□□ 0.42
UPF1-202ENST00000594243 CTDP1Q9Y5B0 961 aaPredicted RBP17.66■□□□□ 0.42
UPF1-202ENST00000594243 SLC27A2O14975 620 aa17.65■□□□□ 0.42
UPF1-202ENST00000594243 PLA2G6O60733 806 aa17.65■□□□□ 0.42
UPF1-202ENST00000594243 ZBED4O75132 1171 aa17.65■□□□□ 0.42
UPF1-202ENST00000594243 IKQ13123 557 aaPredicted RBP17.65■□□□□ 0.42
UPF1-202ENST00000594243 IRF5Q13568 498 aa17.65■□□□□ 0.42
UPF1-202ENST00000594243 CREB3L3Q68CJ9 461 aa17.65■□□□□ 0.42
UPF1-202ENST00000594243 GPR142Q7Z601 462 aa17.65■□□□□ 0.42
UPF1-202ENST00000594243 PLEKHH3Q7Z736 793 aa17.65■□□□□ 0.42
UPF1-202ENST00000594243 KIFC2Q96AC6 838 aa17.65■□□□□ 0.42
UPF1-202ENST00000594243 NUDT12Q9BQG2 462 aa17.65■□□□□ 0.42
UPF1-202ENST00000594243 KAT14Q9H8E8 782 aa17.65■□□□□ 0.42
UPF1-202ENST00000594243 GJD2Q9UKL4 321 aa17.65■□□□□ 0.42
UPF1-202ENST00000594243 MTMR7Q9Y216 660 aa17.65■□□□□ 0.42
UPF1-202ENST00000594243 TNKSO95271 1327 aa17.65■□□□□ 0.42
UPF1-202ENST00000594243 ZSWIM8A7E2V4 1837 aa17.64■□□□□ 0.41
UPF1-202ENST00000594243 ERICH2A1L162 156 aa17.64■□□□□ 0.41
UPF1-202ENST00000594243 SLC25A27O95847 323 aa17.64■□□□□ 0.41
UPF1-202ENST00000594243 TMEM132BQ14DG7 1078 aa17.64■□□□□ 0.41
UPF1-202ENST00000594243 WDR78Q5VTH9 848 aa17.64■□□□□ 0.41
UPF1-202ENST00000594243 KCTD1Q719H9 257 aa17.64■□□□□ 0.41
UPF1-202ENST00000594243 SHCBP1Q8NEM2 672 aa17.64■□□□□ 0.41
UPF1-202ENST00000594243 SOCS4Q8WXH5 440 aa17.64■□□□□ 0.41
UPF1-202ENST00000594243 MOV10L1Q9BXT6 1211 aaKnown RBP17.64■□□□□ 0.41
UPF1-202ENST00000594243 MROH8Q9H579 483 aa17.64■□□□□ 0.41
UPF1-202ENST00000594243 IVNS1ABPQ9Y6Y0 642 aa17.64■□□□□ 0.41
UPF1-202ENST00000594243 MGAMO43451 1857 aa17.64■□□□□ 0.41
UPF1-202ENST00000594243 STRNO43815 780 aa17.63■□□□□ 0.41
UPF1-202ENST00000594243 REC8O95072 547 aa17.63■□□□□ 0.41
UPF1-202ENST00000594243 GRK4P32298 578 aa17.63■□□□□ 0.41
UPF1-202ENST00000594243 COPB2P35606 906 aa17.63■□□□□ 0.41
UPF1-202ENST00000594243 STAT3P40763 770 aa17.63■□□□□ 0.41
UPF1-202ENST00000594243 SART3Q15020 963 aaKnown RBP17.63■□□□□ 0.41
UPF1-202ENST00000594243 CCDC96Q2M329 555 aa17.63■□□□□ 0.41
UPF1-202ENST00000594243 IFIT1BQ5T764 474 aaKnown RBP17.63■□□□□ 0.41
UPF1-202ENST00000594243 CYB5R4Q7L1T6 521 aa17.63■□□□□ 0.41
UPF1-202ENST00000594243 ENAHQ8N8S7 591 aaPredicted RBP17.63■□□□□ 0.41
UPF1-202ENST00000594243 SLAIN1Q8ND83 568 aa17.63■□□□□ 0.41
UPF1-202ENST00000594243 PNMA1Q8ND90 353 aa17.63■□□□□ 0.41
UPF1-202ENST00000594243 PXYLP1Q8TE99 480 aa17.63■□□□□ 0.41
UPF1-202ENST00000594243 ARMC5Q96C12 935 aa17.63■□□□□ 0.41
UPF1-202ENST00000594243 CHMP4CQ96CF2 233 aa17.63■□□□□ 0.41
UPF1-202ENST00000594243 IFIT3O14879 490 aaKnown RBP17.62■□□□□ 0.41
UPF1-202ENST00000594243 ATP2A1O14983 1001 aa17.62■□□□□ 0.41
UPF1-202ENST00000594243 ADCY3O60266 1144 aa17.62■□□□□ 0.41
UPF1-202ENST00000594243 PDHBP11177 359 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms