RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	PDCL2	Q8N4E4	241 aa		17.7	■□□□□ 0.42
DDX39A-209	ENST00000589318	LINC00301	Q8NCQ3	95 aa		17.7	■□□□□ 0.42
DDX39A-209	ENST00000589318	OXER1	Q8TDS5	423 aa		17.7	■□□□□ 0.42
DDX39A-209	ENST00000589318	FOXP1	Q9H334	677 aa	Predicted RBP	17.7	■□□□□ 0.42
DDX39A-209	ENST00000589318	MTMR7	Q9Y216	660 aa		17.7	■□□□□ 0.42
DDX39A-209	ENST00000589318	TCP10L2	B9ZVM9	353 aa		17.69	■□□□□ 0.42
DDX39A-209	ENST00000589318	SCG2	P13521	617 aa		17.69	■□□□□ 0.42
DDX39A-209	ENST00000589318	LIG1	P18858	919 aa		17.69	■□□□□ 0.42
DDX39A-209	ENST00000589318	GNAQ	P50148	359 aa		17.69	■□□□□ 0.42
DDX39A-209	ENST00000589318	GABPB1	Q06547	395 aa	Predicted RBP	17.69	■□□□□ 0.42
DDX39A-209	ENST00000589318	SPON1	Q9HCB6	807 aa		17.69	■□□□□ 0.42
DDX39A-209	ENST00000589318	FZD9	O00144	591 aa		17.68	■□□□□ 0.42
DDX39A-209	ENST00000589318	YEATS4	O95619	227 aa		17.68	■□□□□ 0.42
DDX39A-209	ENST00000589318	TTLL1	O95922	423 aa		17.68	■□□□□ 0.42
DDX39A-209	ENST00000589318	GOLGA8H	P0CJ92	632 aa		17.68	■□□□□ 0.42
DDX39A-209	ENST00000589318	SNHG28	P0DPA3	235 aa		17.68	■□□□□ 0.42
DDX39A-209	ENST00000589318	EIF6	P56537	245 aa	Known RBP	17.68	■□□□□ 0.42
DDX39A-209	ENST00000589318	NR5A1	Q13285	461 aa		17.68	■□□□□ 0.42
DDX39A-209	ENST00000589318	TNIP1	Q15025	636 aa		17.68	■□□□□ 0.42
DDX39A-209	ENST00000589318	USP17L2	Q6R6M4	530 aa		17.68	■□□□□ 0.42
DDX39A-209	ENST00000589318	FAM151A	Q8WW52	585 aa		17.68	■□□□□ 0.42
DDX39A-209	ENST00000589318	TMOD2	Q9NZR1	351 aa		17.68	■□□□□ 0.42
DDX39A-209	ENST00000589318	DICER1	Q9UPY3	1922 aa	Known RBP	17.68	■□□□□ 0.42
DDX39A-209	ENST00000589318	WNT10B	O00744	389 aa		17.68	■□□□□ 0.42
DDX39A-209	ENST00000589318	PDHB	P11177	359 aa		17.68	■□□□□ 0.42
DDX39A-209	ENST00000589318	ZNF280A	P59817	542 aa	Predicted RBP	17.68	■□□□□ 0.42
DDX39A-209	ENST00000589318	SAFB	Q15424	915 aa	Known RBP eCLIP	17.68	■□□□□ 0.42
DDX39A-209	ENST00000589318	CERKL	Q49MI3	558 aa	Predicted RBP	17.68	■□□□□ 0.42
DDX39A-209	ENST00000589318	FKBP1C	Q5VVH2	108 aa		17.68	■□□□□ 0.42
DDX39A-209	ENST00000589318	ANO1	Q5XXA6	986 aa		17.68	■□□□□ 0.42
DDX39A-209	ENST00000589318	LRRC47	Q8N1G4	583 aa	Known RBP	17.68	■□□□□ 0.42
DDX39A-209	ENST00000589318	CLIP2	Q9UDT6	1046 aa		17.68	■□□□□ 0.42
DDX39A-209	ENST00000589318	USP17L5	A8MUK1	530 aa		17.67	■□□□□ 0.42
DDX39A-209	ENST00000589318	KLRF2	D3W0D1	207 aa		17.67	■□□□□ 0.42
DDX39A-209	ENST00000589318	PARP1	P09874	1014 aa	Known RBP	17.67	■□□□□ 0.42
DDX39A-209	ENST00000589318	XBP1	P17861	261 aa		17.67	■□□□□ 0.42
DDX39A-209	ENST00000589318	GNL2	Q13823	731 aa	Known RBP	17.67	■□□□□ 0.42
DDX39A-209	ENST00000589318	CCDC183	Q5T5S1	534 aa		17.67	■□□□□ 0.42
DDX39A-209	ENST00000589318	ANKRD7	Q92527	254 aa		17.67	■□□□□ 0.42
DDX39A-209	ENST00000589318	CSRNP1	Q96S65	589 aa		17.67	■□□□□ 0.42
DDX39A-209	ENST00000589318	ARID3A	Q99856	593 aa		17.67	■□□□□ 0.42
DDX39A-209	ENST00000589318	SPZ1	Q9BXG8	430 aa		17.67	■□□□□ 0.42
DDX39A-209	ENST00000589318	MYOZ2	Q9NPC6	264 aa		17.67	■□□□□ 0.42
DDX39A-209	ENST00000589318	MPHOSPH10	O00566	681 aa	Known RBP	17.66	■□□□□ 0.42
DDX39A-209	ENST00000589318	EGFR	P00533	1210 aa		17.66	■□□□□ 0.42
DDX39A-209	ENST00000589318	RPS12	P25398	132 aa	Known RBP	17.66	■□□□□ 0.42
DDX39A-209	ENST00000589318	TOB1	P50616	345 aa	Predicted RBP	17.66	■□□□□ 0.42
DDX39A-209	ENST00000589318	RRP1B	Q14684	758 aa	Known RBP	17.66	■□□□□ 0.42
DDX39A-209	ENST00000589318	NBPF9	Q3BBW0	867 aa		17.66	■□□□□ 0.42
DDX39A-209	ENST00000589318	TNFRSF25	Q93038	417 aa		17.66	■□□□□ 0.42
DDX39A-209	ENST00000589318	LZTS2	Q9BRK4	669 aa		17.66	■□□□□ 0.42
DDX39A-209	ENST00000589318	CPVL	Q9H3G5	476 aa		17.66	■□□□□ 0.42
DDX39A-209	ENST00000589318	SBF1	O95248	1867 aa		17.66	■□□□□ 0.42
DDX39A-209	ENST00000589318	GOLGA6L4	A6NEF3	574 aa		17.66	■□□□□ 0.42
DDX39A-209	ENST00000589318	FAM193A	P78312	1265 aa		17.66	■□□□□ 0.42
DDX39A-209	ENST00000589318	JAG1	P78504	1218 aa		17.66	■□□□□ 0.42
DDX39A-209	ENST00000589318	PTPA	Q15257	358 aa		17.66	■□□□□ 0.42
DDX39A-209	ENST00000589318	OGFR	Q9NZT2	677 aa		17.66	■□□□□ 0.42
DDX39A-209	ENST00000589318	PGAP2	Q9UHJ9	254 aa		17.66	■□□□□ 0.42
DDX39A-209	ENST00000589318	PCDHA7	Q9UN72	937 aa		17.66	■□□□□ 0.42
DDX39A-209	ENST00000589318	SMARCA1	P28370	1054 aa		17.65	■□□□□ 0.42
DDX39A-209	ENST00000589318	SLC39A14	Q15043	492 aa		17.65	■□□□□ 0.42
DDX39A-209	ENST00000589318	SF3A1	Q15459	793 aa	Known RBP	17.65	■□□□□ 0.42
DDX39A-209	ENST00000589318	TYW1B	Q6NUM6	668 aa		17.65	■□□□□ 0.42
DDX39A-209	ENST00000589318	SIAH1	Q8IUQ4	282 aa		17.65	■□□□□ 0.42
DDX39A-209	ENST00000589318	CDAN1	Q8IWY9	1227 aa		17.65	■□□□□ 0.42
DDX39A-209	ENST00000589318	KCNG4	Q8TDN1	519 aa		17.65	■□□□□ 0.42
DDX39A-209	ENST00000589318	SPTLC2	O15270	562 aa		17.64	■□□□□ 0.42
DDX39A-209	ENST00000589318	KRT2	P35908	639 aa		17.64	■□□□□ 0.42
DDX39A-209	ENST00000589318	MMP14	P50281	582 aa		17.64	■□□□□ 0.42
DDX39A-209	ENST00000589318	STK38	Q15208	465 aa		17.64	■□□□□ 0.42
DDX39A-209	ENST00000589318	EARS2	Q5JPH6	523 aa	Known RBP	17.64	■□□□□ 0.42
DDX39A-209	ENST00000589318	FAM83A	Q86UY5	434 aa		17.64	■□□□□ 0.42
DDX39A-209	ENST00000589318	MKL1	Q969V6	931 aa		17.64	■□□□□ 0.42
DDX39A-209	ENST00000589318	TRIM34	Q9BYJ4	488 aa		17.64	■□□□□ 0.42
DDX39A-209	ENST00000589318	FHDC1	Q9C0D6	1143 aa	Predicted RBP	17.64	■□□□□ 0.42
DDX39A-209	ENST00000589318	VEZT	Q9HBM0	779 aa		17.64	■□□□□ 0.42
DDX39A-209	ENST00000589318	DACT1	Q9NYF0	836 aa		17.64	■□□□□ 0.42
DDX39A-209	ENST00000589318	HERC5	Q9UII4	1024 aa	Known RBP	17.64	■□□□□ 0.42
DDX39A-209	ENST00000589318	FAM205C	A6NFA0	338 aa		17.64	■□□□□ 0.41
DDX39A-209	ENST00000589318	ADAMTS3	O15072	1205 aa		17.64	■□□□□ 0.41
DDX39A-209	ENST00000589318	NR1I2	O75469	434 aa		17.64	■□□□□ 0.41
DDX39A-209	ENST00000589318	GDF11	O95390	407 aa		17.64	■□□□□ 0.41
DDX39A-209	ENST00000589318	ME1	P48163	572 aa		17.64	■□□□□ 0.41
DDX39A-209	ENST00000589318	GMPS	P49915	693 aa	Predicted RBP	17.64	■□□□□ 0.41
DDX39A-209	ENST00000589318	SEPT2	Q15019	361 aa		17.64	■□□□□ 0.41
DDX39A-209	ENST00000589318	ASPRV1	Q53RT3	343 aa		17.64	■□□□□ 0.41
DDX39A-209	ENST00000589318	TMEM179	Q6ZVK1	233 aa		17.64	■□□□□ 0.41
DDX39A-209	ENST00000589318	BICD2	Q8TD16	824 aa		17.64	■□□□□ 0.41
DDX39A-209	ENST00000589318	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	17.64	■□□□□ 0.41	8e-6	■■□□□ 13.6
DDX39A-209	ENST00000589318	TMEM39B	Q9GZU3	492 aa		17.64	■□□□□ 0.41
DDX39A-209	ENST00000589318	GOLPH3L	Q9H4A5	285 aa		17.64	■□□□□ 0.41
DDX39A-209	ENST00000589318	SH3GLB2	Q9NR46	395 aa		17.64	■□□□□ 0.41
DDX39A-209	ENST00000589318	NYAP2	Q9P242	653 aa		17.64	■□□□□ 0.41
DDX39A-209	ENST00000589318	ZNF541	Q9H0D2	1346 aa		17.64	■□□□□ 0.41
DDX39A-209	ENST00000589318	CTIF	O43310	598 aa	Known RBP	17.63	■□□□□ 0.41
DDX39A-209	ENST00000589318	EEF2	P13639	858 aa	Known RBP	17.63	■□□□□ 0.41
DDX39A-209	ENST00000589318	ZNF543	Q08ER8	600 aa		17.63	■□□□□ 0.41
DDX39A-209	ENST00000589318	AXDND1	Q5T1B0	1012 aa	Predicted RBP	17.63	■□□□□ 0.41
DDX39A-209	ENST00000589318	WWC2	Q6AWC2	1192 aa		17.63	■□□□□ 0.41

Retrieved 100 of 20,778 RNA–protein pairs in 110 ms