RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 USP48Q86UV5 1035 aa25.78■■□□□ 1.72
ATG4D-209ENST00000588857 GMCL1P1Q8NEA9 526 aa25.78■■□□□ 1.72
ATG4D-209ENST00000588857 FBXO18Q8NFZ0 1043 aa25.78■■□□□ 1.72
ATG4D-209ENST00000588857 AIFM3Q96NN9 605 aa25.78■■□□□ 1.72
ATG4D-209ENST00000588857 SH2D4AQ9H788 454 aa25.78■■□□□ 1.72
ATG4D-209ENST00000588857 FRMPD2Q68DX3 1309 aaPredicted RBP25.77■■□□□ 1.72
ATG4D-209ENST00000588857 SMARCA1P28370 1054 aa25.77■■□□□ 1.72
ATG4D-209ENST00000588857 CCDC96Q2M329 555 aa25.77■■□□□ 1.72
ATG4D-209ENST00000588857 GPATCH4Q5T3I0 446 aaKnown RBP25.77■■□□□ 1.72
ATG4D-209ENST00000588857 SLFN13Q68D06 897 aa25.77■■□□□ 1.72
ATG4D-209ENST00000588857 DCAF4Q8WV16 495 aa25.77■■□□□ 1.72
ATG4D-209ENST00000588857 ZNF112Q9UJU3 913 aa25.77■■□□□ 1.72
ATG4D-209ENST00000588857 F5H6K3 240 aa25.76■■□□□ 1.71
ATG4D-209ENST00000588857 UBE2Q2LH0YL09 131 aa25.76■■□□□ 1.71
ATG4D-209ENST00000588857 KLRC3Q07444 240 aa25.76■■□□□ 1.71
ATG4D-209ENST00000588857 ZNF543Q08ER8 600 aa25.76■■□□□ 1.71
ATG4D-209ENST00000588857 CLEC17AQ6ZS10 378 aa25.76■■□□□ 1.71
ATG4D-209ENST00000588857 FERMT3Q86UX7 667 aa25.76■■□□□ 1.71
ATG4D-209ENST00000588857 WRNIP1Q96S55 665 aa25.76■■□□□ 1.71
ATG4D-209ENST00000588857 SPZ1Q9BXG8 430 aa25.76■■□□□ 1.71
ATG4D-209ENST00000588857 ISY1Q9ULR0 285 aaKnown RBP25.76■■□□□ 1.71
ATG4D-209ENST00000588857 SSC5DA1L4H1 1573 aa25.75■■□□□ 1.71
ATG4D-209ENST00000588857 hCG_1642624A0A1W2PR95 340 aa25.75■■□□□ 1.71
ATG4D-209ENST00000588857 A0A1W2PRG0 241 aa25.75■■□□□ 1.71
ATG4D-209ENST00000588857 XBP1P17861 261 aa25.75■■□□□ 1.71
ATG4D-209ENST00000588857 INPP5BP32019 993 aa25.75■■□□□ 1.71
ATG4D-209ENST00000588857 SLC1A4P43007 532 aa25.75■■□□□ 1.71
ATG4D-209ENST00000588857 CST9Q5W186 159 aa25.75■■□□□ 1.71
ATG4D-209ENST00000588857 MCTP1Q6DN14 999 aa25.75■■□□□ 1.71
ATG4D-209ENST00000588857 GOPCQ9HD26 462 aa25.75■■□□□ 1.71
ATG4D-209ENST00000588857 GPCPD1Q9NPB8 672 aa25.75■■□□□ 1.71
ATG4D-209ENST00000588857 TMX2Q9Y320 296 aa25.75■■□□□ 1.71
ATG4D-209ENST00000588857 TCHHQ07283 1943 aa25.75■■□□□ 1.71
ATG4D-209ENST00000588857 BAG4O95429 457 aaKnown RBP25.74■■□□□ 1.71
ATG4D-209ENST00000588857 NFKBIBQ15653 356 aa25.74■■□□□ 1.71
ATG4D-209ENST00000588857 PKN1Q16512 942 aa25.74■■□□□ 1.71
ATG4D-209ENST00000588857 OTUD7BQ6GQQ9 843 aa25.74■■□□□ 1.71
ATG4D-209ENST00000588857 ACER1Q8TDN7 264 aa25.74■■□□□ 1.71
ATG4D-209ENST00000588857 PIBF1Q8WXW3 757 aa25.74■■□□□ 1.71
ATG4D-209ENST00000588857 ZSCAN16Q9H4T2 348 aaPredicted RBP25.74■■□□□ 1.71
ATG4D-209ENST00000588857 FRMD4AQ9P2Q2 1039 aaPredicted RBP25.74■■□□□ 1.71
ATG4D-209ENST00000588857 NF2P35240 595 aa25.73■■□□□ 1.71
ATG4D-209ENST00000588857 ECE1P42892 770 aa25.73■■□□□ 1.71
ATG4D-209ENST00000588857 KRT40Q6A162 431 aa25.73■■□□□ 1.71
ATG4D-209ENST00000588857 SCYL3Q8IZE3 742 aa25.73■■□□□ 1.71
ATG4D-209ENST00000588857 GMCL1Q96IK5 515 aa25.73■■□□□ 1.71
ATG4D-209ENST00000588857 GJB4Q9NTQ9 266 aa25.73■■□□□ 1.71
ATG4D-209ENST00000588857 NDUFB10O96000 172 aa25.73■■□□□ 1.71
ATG4D-209ENST00000588857 SCG2P13521 617 aa25.73■■□□□ 1.71
ATG4D-209ENST00000588857 FOXD4L6Q3SYB3 417 aaPredicted RBP25.73■■□□□ 1.71
ATG4D-209ENST00000588857 FOXD4L3Q6VB84 417 aaPredicted RBP25.73■■□□□ 1.71
ATG4D-209ENST00000588857 JMYQ8N9B5 988 aa25.73■■□□□ 1.71
ATG4D-209ENST00000588857 PICK1Q9NRD5 415 aa25.73■■□□□ 1.71
ATG4D-209ENST00000588857 MYH15Q9Y2K3 1946 aa25.72■■□□□ 1.71
ATG4D-209ENST00000588857 CYTH3O43739 400 aa25.72■■□□□ 1.71
ATG4D-209ENST00000588857 PPP1R12BO60237 982 aaPredicted RBP25.72■■□□□ 1.71
ATG4D-209ENST00000588857 PFKFB3Q16875 520 aaPredicted RBP25.72■■□□□ 1.71
ATG4D-209ENST00000588857 DLK2Q6UY11 383 aa25.72■■□□□ 1.71
ATG4D-209ENST00000588857 KCTD1Q719H9 257 aa25.72■■□□□ 1.71
ATG4D-209ENST00000588857 ZKSCAN4Q969J2 545 aaPredicted RBP25.72■■□□□ 1.71
ATG4D-209ENST00000588857 RRP36Q96EU6 259 aaKnown RBP25.72■■□□□ 1.71
ATG4D-209ENST00000588857 FEZ1Q99689 392 aa25.72■■□□□ 1.71
ATG4D-209ENST00000588857 UBA5Q9GZZ9 404 aa25.72■■□□□ 1.71
ATG4D-209ENST00000588857 CPVLQ9H3G5 476 aa25.72■■□□□ 1.71
ATG4D-209ENST00000588857 CELF2O95319 508 aaKnown RBP25.71■■□□□ 1.71
ATG4D-209ENST00000588857 PRKG1Q13976 671 aa25.71■■□□□ 1.71
ATG4D-209ENST00000588857 SLC35G1Q2M3R5 365 aa25.71■■□□□ 1.71
ATG4D-209ENST00000588857 CDCA5Q96FF9 252 aa25.71■■□□□ 1.71
ATG4D-209ENST00000588857 VAT1LQ9HCJ6 419 aa25.71■■□□□ 1.71
ATG4D-209ENST00000588857 SEC63Q9UGP8 760 aaKnown RBP25.71■■□□□ 1.71
ATG4D-209ENST00000588857 FZD1Q9UP38 647 aa25.71■■□□□ 1.71
ATG4D-209ENST00000588857 GOLGA6L22H0YM25 854 aa25.7■■□□□ 1.71
ATG4D-209ENST00000588857 MCM4P33991 863 aa25.7■■□□□ 1.71
ATG4D-209ENST00000588857 RESTQ13127 1097 aa25.7■■□□□ 1.71
ATG4D-209ENST00000588857 SAFBQ15424 915 aaKnown RBP eCLIP25.7■■□□□ 1.71
ATG4D-209ENST00000588857 CCDC84Q86UT8 332 aaPredicted RBP25.7■■□□□ 1.71
ATG4D-209ENST00000588857 RIOX1Q9H6W3 641 aa25.7■■□□□ 1.71
ATG4D-209ENST00000588857 ABT1Q9ULW3 272 aaKnown RBP25.7■■□□□ 1.71
ATG4D-209ENST00000588857 RASSF10A6NK89 507 aa25.69■■□□□ 1.7
ATG4D-209ENST00000588857 USP2O75604 605 aaPredicted RBP25.69■■□□□ 1.7
ATG4D-209ENST00000588857 BMP3P12645 472 aa25.69■■□□□ 1.7
ATG4D-209ENST00000588857 TTBK2Q6IQ55 1244 aa25.69■■□□□ 1.7
ATG4D-209ENST00000588857 VCPKMTQ9H867 229 aa25.69■■□□□ 1.7
ATG4D-209ENST00000588857 GNL2Q13823 731 aaKnown RBP25.69■■□□□ 1.7
ATG4D-209ENST00000588857 SPICE1Q8N0Z3 855 aa25.69■■□□□ 1.7
ATG4D-209ENST00000588857 DDX55Q8NHQ9 600 aaKnown RBP eCLIP25.69■■□□□ 1.7
ATG4D-209ENST00000588857 AS3MTQ9HBK9 375 aa25.69■■□□□ 1.7
ATG4D-209ENST00000588857 VPS54Q9P1Q0 977 aa25.69■■□□□ 1.7
ATG4D-209ENST00000588857 MMP1P03956 469 aa25.68■■□□□ 1.7
ATG4D-209ENST00000588857 ZYXQ15942 572 aaKnown RBP25.68■■□□□ 1.7
ATG4D-209ENST00000588857 DEFB115Q30KQ5 88 aa25.68■■□□□ 1.7
ATG4D-209ENST00000588857 HOMER1Q86YM7 354 aa25.68■■□□□ 1.7
ATG4D-209ENST00000588857 NUP88Q99567 741 aaPredicted RBP25.68■■□□□ 1.7
ATG4D-209ENST00000588857 KCNJ14Q9UNX9 436 aa25.68■■□□□ 1.7
ATG4D-209ENST00000588857 DDX11L8A8MPP1 907 aa25.67■■□□□ 1.7
ATG4D-209ENST00000588857 SLC16A2P36021 539 aa25.67■■□□□ 1.7
ATG4D-209ENST00000588857 IREB2P48200 963 aaKnown RBP25.67■■□□□ 1.7
ATG4D-209ENST00000588857 MAP3K9P80192 1104 aa25.67■■□□□ 1.7
ATG4D-209ENST00000588857 NOL9Q5SY16 702 aaKnown RBP25.67■■□□□ 1.7
ATG4D-209ENST00000588857 ADGRF4Q8IZF3 695 aa25.67■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms