RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 SEPT4O43236 478 aa14.01□□□□□ -0.17
LIG3-207ENST00000586119 RAB11FIP3O75154 756 aa14.01□□□□□ -0.17
LIG3-207ENST00000586119 ADCYAP1R1P41586 468 aa14.01□□□□□ -0.17
LIG3-207ENST00000586119 SHHQ15465 462 aa14.01□□□□□ -0.17
LIG3-207ENST00000586119 TRIM60Q495X7 471 aa14.01□□□□□ -0.17
LIG3-207ENST00000586119 FAM47AQ5JRC9 791 aa14.01□□□□□ -0.17
LIG3-207ENST00000586119 C9orf50Q5SZB4 431 aa14.01□□□□□ -0.17
LIG3-207ENST00000586119 C20orf194Q5TEA3 1177 aa14.01□□□□□ -0.17
LIG3-207ENST00000586119 GUCD1Q96NT3 240 aa14.01□□□□□ -0.17
LIG3-207ENST00000586119 LBHD1Q9BQE6 289 aaPredicted RBP14.01□□□□□ -0.17
LIG3-207ENST00000586119 ATP8A2Q9NTI2 1148 aa14.01□□□□□ -0.17
LIG3-207ENST00000586119 ADAMTS5Q9UNA0 930 aa14.01□□□□□ -0.17
LIG3-207ENST00000586119 ZNF236Q9UL36 1845 aa14.01□□□□□ -0.17
LIG3-207ENST00000586119 TRIM43BA6NCK2 446 aa14□□□□□ -0.17
LIG3-207ENST00000586119 RAD21O60216 631 aa14□□□□□ -0.17
LIG3-207ENST00000586119 HMMRO75330 724 aa14□□□□□ -0.17
LIG3-207ENST00000586119 LRRC41Q15345 812 aa14□□□□□ -0.17
LIG3-207ENST00000586119 C16orf86Q6ZW13 317 aa14□□□□□ -0.17
LIG3-207ENST00000586119 ARRDC4Q8NCT1 418 aa14□□□□□ -0.17
LIG3-207ENST00000586119 BADQ92934 168 aa14□□□□□ -0.17
LIG3-207ENST00000586119 TRIM43Q96BQ3 446 aaPredicted RBP14□□□□□ -0.17
LIG3-207ENST00000586119 LENG1Q96BZ8 264 aaPredicted RBP14□□□□□ -0.17
LIG3-207ENST00000586119 NUP88Q99567 741 aaPredicted RBP14□□□□□ -0.17
LIG3-207ENST00000586119 MROH8Q9H579 483 aa14□□□□□ -0.17
LIG3-207ENST00000586119 PRDM5Q9NQX1 630 aaPredicted RBP14□□□□□ -0.17
LIG3-207ENST00000586119 DDX19BQ9UMR2 479 aa14□□□□□ -0.17
LIG3-207ENST00000586119 LAMA2P24043 3122 aaKnown RBP14□□□□□ -0.17
LIG3-207ENST00000586119 WDR46O15213 610 aaKnown RBP13.99□□□□□ -0.17
LIG3-207ENST00000586119 FCER1AP12319 257 aa13.99□□□□□ -0.17
LIG3-207ENST00000586119 ITGB8P26012 769 aa13.99□□□□□ -0.17
LIG3-207ENST00000586119 UBE3CQ15386 1083 aa13.99□□□□□ -0.17
LIG3-207ENST00000586119 FAM83BQ5T0W9 1011 aa13.99□□□□□ -0.17
LIG3-207ENST00000586119 MB21D1Q8N884 522 aa13.99□□□□□ -0.17
LIG3-207ENST00000586119 REPS2Q8NFH8 660 aa13.99□□□□□ -0.17
LIG3-207ENST00000586119 CCDC17Q96LX7 622 aa13.99□□□□□ -0.17
LIG3-207ENST00000586119 MMP19Q99542 508 aa13.99□□□□□ -0.17
LIG3-207ENST00000586119 KBTBD13C9JR72 458 aa13.98□□□□□ -0.17
LIG3-207ENST00000586119 PGK1P00558 417 aa13.98□□□□□ -0.17
LIG3-207ENST00000586119 STAT3P40763 770 aa13.98□□□□□ -0.17
LIG3-207ENST00000586119 IRX5P78411 483 aaPredicted RBP13.98□□□□□ -0.17
LIG3-207ENST00000586119 ZNF792Q3KQV3 632 aa13.98□□□□□ -0.17
LIG3-207ENST00000586119 TSHZ3Q63HK5 1081 aa13.98□□□□□ -0.17
LIG3-207ENST00000586119 ABRAQ8N0Z2 381 aa13.98□□□□□ -0.17
LIG3-207ENST00000586119 STRBPQ96SI9 672 aaKnown RBP13.98□□□□□ -0.17
LIG3-207ENST00000586119 PDLIM7Q9NR12 457 aa13.98□□□□□ -0.17
LIG3-207ENST00000586119 RIPK3Q9Y572 518 aa13.98□□□□□ -0.17
LIG3-207ENST00000586119 MCM3APO60318 1980 aa13.97□□□□□ -0.17
LIG3-207ENST00000586119 GSG1L2A8MUP6 293 aa13.97□□□□□ -0.17
LIG3-207ENST00000586119 VWA5AO00534 786 aa13.97□□□□□ -0.17
LIG3-207ENST00000586119 ZNF865P0CJ78 1059 aaPredicted RBP13.97□□□□□ -0.17
LIG3-207ENST00000586119 MS4A1P11836 297 aa13.97□□□□□ -0.17
LIG3-207ENST00000586119 EPHB4P54760 987 aa13.97□□□□□ -0.17
LIG3-207ENST00000586119 TLE2Q04725 743 aa13.97□□□□□ -0.17
LIG3-207ENST00000586119 SNX17Q15036 470 aa13.97□□□□□ -0.17
LIG3-207ENST00000586119 RIOX2Q8IUF8 465 aa13.97□□□□□ -0.17
LIG3-207ENST00000586119 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.97□□□□□ -0.179e-7■□□□□ 9.1
LIG3-207ENST00000586119 KANSL2Q9H9L4 492 aa13.97□□□□□ -0.17
LIG3-207ENST00000586119 PRKAG2Q9UGJ0 569 aa13.97□□□□□ -0.17
LIG3-207ENST00000586119 ZNF214Q9UL59 606 aaPredicted RBP13.97□□□□□ -0.17
LIG3-207ENST00000586119 PPP1R9AQ9ULJ8 1098 aa13.97□□□□□ -0.17
LIG3-207ENST00000586119 GREB1LQ9C091 1923 aaPredicted RBP13.96□□□□□ -0.17
LIG3-207ENST00000586119 MINDY4BA8MYZ0 360 aa13.96□□□□□ -0.17
LIG3-207ENST00000586119 SLC25A27O95847 323 aa13.96□□□□□ -0.17
LIG3-207ENST00000586119 RASA1P20936 1047 aa13.96□□□□□ -0.17
LIG3-207ENST00000586119 SLC4A3P48751 1232 aa13.96□□□□□ -0.17
LIG3-207ENST00000586119 OSBP2Q969R2 916 aa13.96□□□□□ -0.17
LIG3-207ENST00000586119 TINF2Q9BSI4 451 aa13.96□□□□□ -0.17
LIG3-207ENST00000586119 SH2D4AQ9H788 454 aa13.96□□□□□ -0.17
LIG3-207ENST00000586119 XPNPEP3Q9NQH7 507 aa13.96□□□□□ -0.17
LIG3-207ENST00000586119 SLC5A4Q9NY91 659 aa13.96□□□□□ -0.17
LIG3-207ENST00000586119 FAM109BQ6ICB4 259 aaPredicted RBP13.95□□□□□ -0.18
LIG3-207ENST00000586119 CHMP4CQ96CF2 233 aa13.95□□□□□ -0.18
LIG3-207ENST00000586119 LRRCC1Q9C099 1032 aa13.95□□□□□ -0.18
LIG3-207ENST00000586119 RCAN3Q9UKA8 241 aa13.95□□□□□ -0.18
LIG3-207ENST00000586119 PHF24Q9UPV7 400 aa13.95□□□□□ -0.18
LIG3-207ENST00000586119 MYH4Q9Y623 1939 aa13.95□□□□□ -0.18
LIG3-207ENST00000586119 F5H6K3 240 aa13.94□□□□□ -0.18
LIG3-207ENST00000586119 PRDM1O75626 825 aa13.94□□□□□ -0.18
LIG3-207ENST00000586119 SNAI1O95863 264 aaPredicted RBP13.94□□□□□ -0.18
LIG3-207ENST00000586119 NDUFB10O96000 172 aa13.94□□□□□ -0.18
LIG3-207ENST00000586119 KLRC3Q07444 240 aa13.94□□□□□ -0.18
LIG3-207ENST00000586119 KCTD2Q14681 263 aa13.94□□□□□ -0.18
LIG3-207ENST00000586119 AMOTL1Q8IY63 956 aa13.94□□□□□ -0.18
LIG3-207ENST00000586119 CPXCR1Q8N123 301 aa13.94□□□□□ -0.18
LIG3-207ENST00000586119 CDX2Q99626 313 aaPredicted RBP13.94□□□□□ -0.18
LIG3-207ENST00000586119 COL25A1Q9BXS0 654 aaPredicted RBP13.94□□□□□ -0.18
LIG3-207ENST00000586119 SEMA6BQ9H3T3 888 aa13.94□□□□□ -0.18
LIG3-207ENST00000586119 EPB41L4AQ9HCS5 686 aaPredicted RBP13.94□□□□□ -0.18
LIG3-207ENST00000586119 GOPCQ9HD26 462 aa13.94□□□□□ -0.18
LIG3-207ENST00000586119 CLIP2Q9UDT6 1046 aa13.94□□□□□ -0.18
LIG3-207ENST00000586119 MYADML2A6NDP7 307 aa13.93□□□□□ -0.18
LIG3-207ENST00000586119 M0R2C6 588 aa13.93□□□□□ -0.18
LIG3-207ENST00000586119 ADAMTS4O75173 837 aa13.93□□□□□ -0.18
LIG3-207ENST00000586119 RARBP10826 455 aa13.93□□□□□ -0.18
LIG3-207ENST00000586119 SBK1Q52WX2 424 aa13.93□□□□□ -0.18
LIG3-207ENST00000586119 SNRNP48Q6IEG0 339 aaKnown RBP13.93□□□□□ -0.18
LIG3-207ENST00000586119 ZSCAN25Q6NSZ9 544 aa13.93□□□□□ -0.18
LIG3-207ENST00000586119 DDRGK1Q96HY6 314 aa13.93□□□□□ -0.18
LIG3-207ENST00000586119 TTYH1Q9H313 450 aaPredicted RBP13.93□□□□□ -0.18
LIG3-207ENST00000586119 MKNK2Q9HBH9 465 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms