RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 SLC5A4Q9NY91 659 aa14.7□□□□□ -0.06
SS18-225ENST00000585121 MTMR4Q9NYA4 1195 aa14.7□□□□□ -0.06
SS18-225ENST00000585121 SYNPO2Q9UMS6 1093 aa14.7□□□□□ -0.06
SS18-225ENST00000585121 CTDP1Q9Y5B0 961 aaPredicted RBP14.7□□□□□ -0.06
SS18-225ENST00000585121 IGKV6D-41A0A0C4DH26 115 aa14.69□□□□□ -0.06
SS18-225ENST00000585121 HIP1O00291 1037 aa14.69□□□□□ -0.06
SS18-225ENST00000585121 FARP2O94887 1054 aaPredicted RBP14.69□□□□□ -0.06
SS18-225ENST00000585121 SLC25A27O95847 323 aa14.69□□□□□ -0.06
SS18-225ENST00000585121 PRKAR2AP13861 404 aaKnown RBP14.69□□□□□ -0.06
SS18-225ENST00000585121 ERCC3P19447 782 aa14.69□□□□□ -0.06
SS18-225ENST00000585121 TFAP4Q01664 338 aa14.69□□□□□ -0.06
SS18-225ENST00000585121 NMIQ13287 307 aaPredicted RBP14.69□□□□□ -0.06
SS18-225ENST00000585121 GRB14Q14449 540 aa14.69□□□□□ -0.06
SS18-225ENST00000585121 FAM47AQ5JRC9 791 aa14.69□□□□□ -0.06
SS18-225ENST00000585121 VPS53Q5VIR6 699 aa14.69□□□□□ -0.06
SS18-225ENST00000585121 DPP9Q86TI2 863 aa14.69□□□□□ -0.06
SS18-225ENST00000585121 NEDD1Q8NHV4 660 aa14.69□□□□□ -0.06
SS18-225ENST00000585121 MKL1Q969V6 931 aa14.69□□□□□ -0.06
SS18-225ENST00000585121 CEP95Q96GE4 821 aa14.69□□□□□ -0.06
SS18-225ENST00000585121 PPP1R9AQ9ULJ8 1098 aa14.69□□□□□ -0.06
SS18-225ENST00000585121 MKI67P46013 3256 aaKnown RBP14.69□□□□□ -0.06
SS18-225ENST00000585121 A0A0D9SFI3 127 aa14.68□□□□□ -0.06
SS18-225ENST00000585121 TSPY2A6NKD2 308 aa14.68□□□□□ -0.06
SS18-225ENST00000585121 IRX6P78412 446 aaPredicted RBP14.68□□□□□ -0.06
SS18-225ENST00000585121 CTDSPL2Q05D32 466 aa14.68□□□□□ -0.06
SS18-225ENST00000585121 TRIM32Q13049 653 aa14.68□□□□□ -0.06
SS18-225ENST00000585121 SLF1Q9BQI6 1058 aa14.68□□□□□ -0.06
SS18-225ENST00000585121 TOMM22Q9NS69 142 aa14.68□□□□□ -0.06
SS18-225ENST00000585121 DIAPH3Q9NSV4 1193 aa14.68□□□□□ -0.06
SS18-225ENST00000585121 FBXO28Q9NVF7 368 aa14.68□□□□□ -0.06
SS18-225ENST00000585121 ANAPC4Q9UJX5 808 aa14.68□□□□□ -0.06
SS18-225ENST00000585121 CCDC171Q6TFL3 1326 aa14.67□□□□□ -0.06
SS18-225ENST00000585121 RANBP6O60518 1105 aaKnown RBP14.67□□□□□ -0.06
SS18-225ENST00000585121 NDUFB10O96000 172 aa14.67□□□□□ -0.06
SS18-225ENST00000585121 HOXC6P09630 235 aa14.67□□□□□ -0.06
SS18-225ENST00000585121 SDSP20132 328 aa14.67□□□□□ -0.06
SS18-225ENST00000585121 COPB2P35606 906 aa14.67□□□□□ -0.06
SS18-225ENST00000585121 CACNB2Q08289 660 aaPredicted RBP14.67□□□□□ -0.06
SS18-225ENST00000585121 CCL14Q16627 93 aa14.67□□□□□ -0.06
SS18-225ENST00000585121 DPF3Q92784 378 aa14.67□□□□□ -0.06
SS18-225ENST00000585121 CRISPLD2Q9H0B8 497 aa14.67□□□□□ -0.06
SS18-225ENST00000585121 ISY1Q9ULR0 285 aaKnown RBP14.67□□□□□ -0.06
SS18-225ENST00000585121 PLIN4Q96Q06 1357 aa14.67□□□□□ -0.06
SS18-225ENST00000585121 VWA5AO00534 786 aa14.66□□□□□ -0.06
SS18-225ENST00000585121 ZBED4O75132 1171 aa14.66□□□□□ -0.06
SS18-225ENST00000585121 FGAP02671 866 aa14.66□□□□□ -0.06
SS18-225ENST00000585121 HSPD1P10809 573 aaKnown RBP14.66□□□□□ -0.06
SS18-225ENST00000585121 FCER1AP12319 257 aa14.66□□□□□ -0.06
SS18-225ENST00000585121 ADORA2AP29274 412 aa14.66□□□□□ -0.06
SS18-225ENST00000585121 STAT3P40763 770 aa14.66□□□□□ -0.06
SS18-225ENST00000585121 TMEM132BQ14DG7 1078 aa14.66□□□□□ -0.06
SS18-225ENST00000585121 MAP3K21Q5TCX8 1036 aa14.66□□□□□ -0.06
SS18-225ENST00000585121 ABRAQ8N0Z2 381 aa14.66□□□□□ -0.06
SS18-225ENST00000585121 ANKLE1Q8NAG6 615 aa14.66□□□□□ -0.06
SS18-225ENST00000585121 PRPF38AQ8NAV1 312 aaKnown RBP14.66□□□□□ -0.06
SS18-225ENST00000585121 GMCL1P1Q8NEA9 526 aa14.66□□□□□ -0.06
SS18-225ENST00000585121 NUP88Q99567 741 aaPredicted RBP14.66□□□□□ -0.06
SS18-225ENST00000585121 FEM1BQ9UK73 627 aa14.66□□□□□ -0.06
SS18-225ENST00000585121 ADAMTS5Q9UNA0 930 aa14.66□□□□□ -0.06
SS18-225ENST00000585121 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.66□□□□□ -0.06
SS18-225ENST00000585121 FOXP2O15409 715 aa14.66□□□□□ -0.06
SS18-225ENST00000585121 SLFN13Q68D06 897 aa14.66□□□□□ -0.06
SS18-225ENST00000585121 NECAB2Q7Z6G3 386 aa14.66□□□□□ -0.06
SS18-225ENST00000585121 ZNF589Q86UQ0 364 aaPredicted RBP14.66□□□□□ -0.06
SS18-225ENST00000585121 RIOX2Q8IUF8 465 aa14.66□□□□□ -0.06
SS18-225ENST00000585121 LRRC47Q8N1G4 583 aaKnown RBP14.66□□□□□ -0.06
SS18-225ENST00000585121 STX8Q9UNK0 236 aa14.66□□□□□ -0.06
SS18-225ENST00000585121 ZMYM6O95789 1325 aa14.65□□□□□ -0.06
SS18-225ENST00000585121 ORC4O43929 436 aa14.65□□□□□ -0.06
SS18-225ENST00000585121 BMP3P12645 472 aa14.65□□□□□ -0.06
SS18-225ENST00000585121 KCTD2Q14681 263 aa14.65□□□□□ -0.06
SS18-225ENST00000585121 RRP12Q5JTH9 1297 aaKnown RBP14.65□□□□□ -0.06
SS18-225ENST00000585121 CWC27Q6UX04 472 aaKnown RBP14.65□□□□□ -0.06
SS18-225ENST00000585121 UBE2Q1Q7Z7E8 422 aa14.65□□□□□ -0.06
SS18-225ENST00000585121 KIFC2Q96AC6 838 aa14.65□□□□□ -0.06
SS18-225ENST00000585121 PCP11498 1178 aaKnown RBP14.64□□□□□ -0.07
SS18-225ENST00000585121 IKQ13123 557 aaPredicted RBP14.64□□□□□ -0.07
SS18-225ENST00000585121 OLFML2BQ68BL8 750 aa14.64□□□□□ -0.07
SS18-225ENST00000585121 NPLOC4Q8TAT6 608 aa14.64□□□□□ -0.07
SS18-225ENST00000585121 CHURC1Q8WUH1 139 aa14.64□□□□□ -0.07
SS18-225ENST00000585121 MMP19Q99542 508 aa14.64□□□□□ -0.07
SS18-225ENST00000585121 TEX13BQ9BXU2 312 aa14.64□□□□□ -0.07
SS18-225ENST00000585121 RNF41Q9H4P4 317 aaPredicted RBP14.64□□□□□ -0.07
SS18-225ENST00000585121 NR2E3Q9Y5X4 410 aa14.64□□□□□ -0.07
SS18-225ENST00000585121 FGRP09769 529 aa14.63□□□□□ -0.07
SS18-225ENST00000585121 FDX1P10109 184 aa14.63□□□□□ -0.07
SS18-225ENST00000585121 CNGA1P29973 690 aa14.63□□□□□ -0.07
SS18-225ENST00000585121 CCND3P30281 292 aaPredicted RBP14.63□□□□□ -0.07
SS18-225ENST00000585121 SLC1A4P43007 532 aa14.63□□□□□ -0.07
SS18-225ENST00000585121 MFSD6Q6ZSS7 791 aa14.63□□□□□ -0.07
SS18-225ENST00000585121 PAWRQ96IZ0 340 aaKnown RBP14.63□□□□□ -0.07
SS18-225ENST00000585121 INCENPQ9NQS7 918 aa14.63□□□□□ -0.07
SS18-225ENST00000585121 FLRT1Q9NZU1 646 aa14.63□□□□□ -0.07
SS18-225ENST00000585121 OGDHLQ9ULD0 1010 aa14.63□□□□□ -0.07
SS18-225ENST00000585121 PLXNB2O15031 1838 aa14.63□□□□□ -0.07
SS18-225ENST00000585121 TMEM232C9JQI7 657 aa14.62□□□□□ -0.07
SS18-225ENST00000585121 ZNF213O14771 459 aa14.62□□□□□ -0.07
SS18-225ENST00000585121 MSCO60682 206 aa14.62□□□□□ -0.07
SS18-225ENST00000585121 COBLO75128 1261 aa14.62□□□□□ -0.07
SS18-225ENST00000585121 CYP2C19P33261 490 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms