RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	SLC4A8	Q2Y0W8	1093 aa		13.14	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	CPLX3	Q8WVH0	158 aa		13.14	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	RPGR	Q92834	1020 aa	Known RBP	13.14	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	CARD6	Q9BX69	1037 aa		13.14	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	ZCCHC17	Q9NP64	241 aa	Known RBP	13.14	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	ZMYM6	O95789	1325 aa		13.14	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	SBF2	Q86WG5	1849 aa		13.14	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	IFIT3	O14879	490 aa	Known RBP	13.13	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	TGFB3	P10600	412 aa		13.13	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	CLCN6	P51797	869 aa		13.13	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	IFT88	Q13099	833 aa		13.13	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	NTRK3	Q16288	839 aa		13.13	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	KCNG4	Q8TDN1	519 aa		13.13	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	ERO1A	Q96HE7	468 aa		13.13	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	IRX2	Q9BZI1	471 aa	Predicted RBP	13.13	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	ZBTB43	O43298	467 aa		13.13	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	NEMF	O60524	1076 aa		13.13	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	TNNT3	P45378	269 aa	Predicted RBP	13.13	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	KARS	Q15046	597 aa	Known RBP	13.13	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	PRR5L	Q6MZQ0	368 aa		13.13	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	TXNRD3	Q86VQ6	643 aa		13.13	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	FAM212A	Q96EL1	285 aa		13.13	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	NAPB	Q9H115	298 aa		13.13	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	POLR3E	Q9NVU0	708 aa		13.13	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	RABL2B	Q9UNT1	228 aa		13.13	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063		A0A0U1RQJ8	604 aa		13.12	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	FAM205C	A6NFA0	338 aa		13.12	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	GSG1L2	A8MUP6	293 aa		13.12	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	BTBD18	B2RXH4	712 aa		13.12	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	FAM163B	P0C2L3	166 aa		13.12	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	GSDMD	P57764	484 aa		13.12	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	CCDC15	Q0P6D6	951 aa		13.12	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	NR5A1	Q13285	461 aa		13.12	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	C4orf46	Q504U0	113 aa		13.12	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	ATRIP	Q8WXE1	791 aa		13.12	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	PCDHA5	Q9Y5H7	936 aa		13.12	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	MORC2	Q9Y6X9	1032 aa	Predicted RBP	13.12	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	PRDM1	O75626	825 aa		13.12	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	TFRC	P02786	760 aa	Known RBP	13.12	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	KLHL10	Q6JEL2	608 aa		13.12	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	UHMK1	Q8TAS1	419 aa	Known RBP	13.12	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	NUP133	Q8WUM0	1156 aa		13.12	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	CCDC34	Q96HJ3	373 aa		13.12	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	SEZ6L	Q9BYH1	1024 aa		13.12	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	BIN2	Q9UBW5	565 aa	Predicted RBP	13.12	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	NHS	Q6T4R5	1651 aa		13.12	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	BMP6	P22004	513 aa		13.11	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	UBE3C	Q15386	1083 aa		13.11	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	TERF2	Q15554	542 aa		13.11	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	USP49	Q70CQ1	688 aa		13.11	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	FBXL16	Q8N461	479 aa		13.11	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	CNNM3	Q8NE01	707 aa		13.11	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	OXER1	Q8TDS5	423 aa		13.11	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	STAM	Q92783	540 aa		13.11	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	FAM84B	Q96KN1	310 aa	Predicted RBP	13.11	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	OSBPL5	Q9H0X9	879 aa	Predicted RBP	13.11	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	13.11	□□□□□ -0.31	1e-7	■■□□□ 13.3
CDK5RAP3-231	ENST00000584063	SLC4A4	Q9Y6R1	1079 aa		13.11	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	MINDY4B	A8MYZ0	360 aa		13.11	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	KIF1C	O43896	1103 aa	Known RBP	13.11	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	CYP7A1	P22680	504 aa		13.11	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	IARS	P41252	1262 aa	Known RBP	13.11	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	STX17	P56962	302 aa		13.11	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	MTF1	Q14872	753 aa		13.11	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	PTPA	Q15257	358 aa		13.11	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	METTL16	Q86W50	562 aa	Known RBP	13.11	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	MNS1	Q8NEH6	495 aa		13.11	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	SHISA4	Q96DD7	197 aa		13.11	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	TSPYL1	Q9H0U9	437 aa		13.11	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	C4A	P0C0L4	1744 aa		13.11	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	C4B	P0C0L5	1744 aa		13.11	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	COL5A3	P25940	1745 aa	Predicted RBP	13.11	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063		A0A1W2PQ27	194 aa		13.1	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063		A0A1W2PQ64	194 aa		13.1	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063		A0A1W2PQD8	194 aa		13.1	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	YEATS4	O95619	227 aa		13.1	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	TOP1	P11387	765 aa	Known RBP	13.1	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	TPM4	P67936	248 aa		13.1	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	SLC10A5	Q5PT55	438 aa		13.1	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	WDR24	Q96S15	920 aa		13.1	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	MAP3K14	Q99558	947 aa		13.1	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.1	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	BAZ2B	Q9UIF8	2168 aa	Known RBP	13.1	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	SYNRG	Q9UMZ2	1314 aa		13.1	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	DYNLL1	P63167	89 aa	Known RBP	13.1	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	ST5	P78524	1137 aa		13.1	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	SLC39A14	Q15043	492 aa		13.1	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	NOM1	Q5C9Z4	860 aa	Known RBP	13.1	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	SLC27A3	Q5K4L6	730 aa		13.1	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	TEX35	Q5T0J7	233 aa		13.1	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	RSPH9	Q9H1X1	276 aa	Predicted RBP	13.1	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	SLC12A7	Q9Y666	1083 aa		13.1	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	MYH3	P11055	1940 aa		13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	CMA1	P23946	247 aa		13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	TOB1	P50616	345 aa	Predicted RBP	13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	TOGARAM2	Q6ZUX3	1019 aa		13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	BRAP	Q7Z569	592 aa		13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	UBXN4	Q92575	508 aa		13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	DUSP9	Q99956	384 aa	Known RBP	13.09	□□□□□ -0.31
CDK5RAP3-231	ENST00000584063	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.09	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 17 ms