RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 RTFDC1Q9BY42 306 aaPredicted RBP11.47□□□□□ -0.57
VPS53-220ENST00000576149 LRRC4BQ9NT99 713 aa11.47□□□□□ -0.57
VPS53-220ENST00000576149 TUBB4AP04350 444 aa11.46□□□□□ -0.57
VPS53-220ENST00000576149 E2F4Q16254 413 aa11.46□□□□□ -0.57
VPS53-220ENST00000576149 IL17AQ16552 155 aa11.46□□□□□ -0.57
VPS53-220ENST00000576149 CRY2Q49AN0 593 aa11.46□□□□□ -0.57
VPS53-220ENST00000576149 BLIDQ8IZY5 108 aa11.46□□□□□ -0.57
VPS53-220ENST00000576149 RPGRQ92834 1020 aaKnown RBP11.46□□□□□ -0.57
VPS53-220ENST00000576149 GPR101Q96P66 508 aaPredicted RBP11.46□□□□□ -0.57
VPS53-220ENST00000576149 SAMSN1Q9NSI8 373 aaKnown RBP11.46□□□□□ -0.57
VPS53-220ENST00000576149 MAD2L2Q9UI95 211 aa11.46□□□□□ -0.57
VPS53-220ENST00000576149 PCDHA4Q9UN74 947 aa11.46□□□□□ -0.57
VPS53-220ENST00000576149 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.46□□□□□ -0.58
VPS53-220ENST00000576149 USP17L3A6NCW0 530 aa11.46□□□□□ -0.58
VPS53-220ENST00000576149 USP17L4A6NCW7 530 aa11.46□□□□□ -0.58
VPS53-220ENST00000576149 CCP110O43303 1012 aa11.46□□□□□ -0.58
VPS53-220ENST00000576149 TSPY3P0CV98 308 aa11.46□□□□□ -0.58
VPS53-220ENST00000576149 TSPY8P0CW00 308 aa11.46□□□□□ -0.58
VPS53-220ENST00000576149 CD44P16070 742 aaKnown RBP11.46□□□□□ -0.58
VPS53-220ENST00000576149 MCM7P33993 719 aa11.46□□□□□ -0.58
VPS53-220ENST00000576149 CUL4BQ13620 913 aa11.46□□□□□ -0.58
VPS53-220ENST00000576149 PTPN21Q16825 1174 aa11.46□□□□□ -0.58
VPS53-220ENST00000576149 ARL6IP4Q66PJ3 421 aaKnown RBP11.46□□□□□ -0.58
VPS53-220ENST00000576149 USP17L1Q7RTZ2 530 aa11.46□□□□□ -0.58
VPS53-220ENST00000576149 PDCL2Q8N4E4 241 aa11.46□□□□□ -0.58
VPS53-220ENST00000576149 PYM1Q9BRP8 204 aaKnown RBP11.46□□□□□ -0.58
VPS53-220ENST00000576149 CCDC94Q9BW85 323 aaPredicted RBP11.46□□□□□ -0.58
VPS53-220ENST00000576149 CD209Q9NNX6 404 aa11.46□□□□□ -0.58
VPS53-220ENST00000576149 IL1R1P14778 569 aa11.45□□□□□ -0.58
VPS53-220ENST00000576149 ATP2B4P23634 1241 aa11.45□□□□□ -0.58
VPS53-220ENST00000576149 CASP1P29466 404 aa11.45□□□□□ -0.58
VPS53-220ENST00000576149 NR1I3Q14994 352 aa11.45□□□□□ -0.58
VPS53-220ENST00000576149 SPATA1Q5VX52 437 aa11.45□□□□□ -0.58
VPS53-220ENST00000576149 SPECC1LQ69YQ0 1117 aa11.45□□□□□ -0.58
VPS53-220ENST00000576149 TMEM139Q8IV31 216 aa11.45□□□□□ -0.58
VPS53-220ENST00000576149 ZNF444Q8N0Y2 327 aaPredicted RBP11.45□□□□□ -0.58
VPS53-220ENST00000576149 C4orf32Q8N8J7 132 aa11.45□□□□□ -0.58
VPS53-220ENST00000576149 IQUBQ8NA54 791 aa11.45□□□□□ -0.58
VPS53-220ENST00000576149 FAM205AQ6ZU69 1335 aa11.45□□□□□ -0.58
VPS53-220ENST00000576149 M0R2N6 131 aa11.45□□□□□ -0.58
VPS53-220ENST00000576149 ONECUT3O60422 494 aaPredicted RBP11.45□□□□□ -0.58
VPS53-220ENST00000576149 UFL1O94874 794 aa11.45□□□□□ -0.58
VPS53-220ENST00000576149 SLC35G1Q2M3R5 365 aa11.45□□□□□ -0.58
VPS53-220ENST00000576149 PDXDC2PQ6P474 469 aa11.45□□□□□ -0.58
VPS53-220ENST00000576149 FCHSD1Q86WN1 690 aa11.45□□□□□ -0.58
VPS53-220ENST00000576149 MAPKAPK5Q8IW41 473 aa11.45□□□□□ -0.58
VPS53-220ENST00000576149 SLC44A5Q8NCS7 719 aa11.45□□□□□ -0.58
VPS53-220ENST00000576149 GPKOWQ92917 476 aaPredicted RBP eCLIP11.45□□□□□ -0.58
VPS53-220ENST00000576149 GPR75-ASB3A0A0A6YYF3 556 aa11.44□□□□□ -0.58
VPS53-220ENST00000576149 A0A1B0GTH6 734 aa11.44□□□□□ -0.58
VPS53-220ENST00000576149 PALM3A6NDB9 673 aaPredicted RBP11.44□□□□□ -0.58
VPS53-220ENST00000576149 PPP1R3GB7ZBB8 358 aa11.44□□□□□ -0.58
VPS53-220ENST00000576149 ARHGAP6O43182 974 aa11.44□□□□□ -0.58
VPS53-220ENST00000576149 GYS1P13807 737 aa11.44□□□□□ -0.58
VPS53-220ENST00000576149 RASA1P20936 1047 aa11.44□□□□□ -0.58
VPS53-220ENST00000576149 LONP1P36776 959 aaKnown RBP11.44□□□□□ -0.58
VPS53-220ENST00000576149 BTDP43251 543 aa11.44□□□□□ -0.58
VPS53-220ENST00000576149 ST5P78524 1137 aa11.44□□□□□ -0.58
VPS53-220ENST00000576149 GOLGA8FQ08AF8 430 aa11.44□□□□□ -0.58
VPS53-220ENST00000576149 GOLGA8DPQ0D2H9 430 aa11.44□□□□□ -0.58
VPS53-220ENST00000576149 TYW1BQ6NUM6 668 aa11.44□□□□□ -0.58
VPS53-220ENST00000576149 APTXQ7Z2E3 356 aaKnown RBP11.44□□□□□ -0.58
VPS53-220ENST00000576149 ZNF526Q8TF50 670 aaPredicted RBP11.44□□□□□ -0.58
VPS53-220ENST00000576149 TMEM47Q9BQJ4 181 aa11.44□□□□□ -0.58
VPS53-220ENST00000576149 ZNF287Q9HBT7 754 aa11.44□□□□□ -0.58
VPS53-220ENST00000576149 SAP30BPQ9UHR5 308 aaKnown RBP11.44□□□□□ -0.58
VPS53-220ENST00000576149 KCNG1Q9UIX4 513 aa11.44□□□□□ -0.58
VPS53-220ENST00000576149 GGA1Q9UJY5 639 aa11.44□□□□□ -0.58
VPS53-220ENST00000576149 ZNF215Q9UL58 517 aaPredicted RBP11.44□□□□□ -0.58
VPS53-220ENST00000576149 BAZ2BQ9UIF8 2168 aaKnown RBP11.44□□□□□ -0.58
VPS53-220ENST00000576149 CYTH3O43739 400 aa11.44□□□□□ -0.58
VPS53-220ENST00000576149 SERPINB2P05120 415 aa11.44□□□□□ -0.58
VPS53-220ENST00000576149 NAA30Q147X3 362 aaPredicted RBP11.44□□□□□ -0.58
VPS53-220ENST00000576149 GALNT17Q6IS24 598 aa11.44□□□□□ -0.58
VPS53-220ENST00000576149 TC2NQ8N9U0 490 aa11.44□□□□□ -0.58
VPS53-220ENST00000576149 DAGLBQ8NCG7 672 aa11.44□□□□□ -0.58
VPS53-220ENST00000576149 RBM17Q96I25 401 aaKnown RBP11.44□□□□□ -0.58
VPS53-220ENST00000576149 L2HGDHQ9H9P8 463 aa11.44□□□□□ -0.58
VPS53-220ENST00000576149 SYNRGQ9UMZ2 1314 aa11.43□□□□□ -0.58
VPS53-220ENST00000576149 NAV1Q8NEY1 1877 aa11.43□□□□□ -0.58
VPS53-220ENST00000576149 BBOX1O75936 387 aa11.43□□□□□ -0.58
VPS53-220ENST00000576149 CDKAL1Q5VV42 579 aa11.43□□□□□ -0.58
VPS53-220ENST00000576149 WWC2Q6AWC2 1192 aa11.43□□□□□ -0.58
VPS53-220ENST00000576149 KLHL10Q6JEL2 608 aa11.43□□□□□ -0.58
VPS53-220ENST00000576149 SYT10Q6XYQ8 523 aa11.43□□□□□ -0.58
VPS53-220ENST00000576149 C16orf86Q6ZW13 317 aa11.43□□□□□ -0.58
VPS53-220ENST00000576149 REXO1L1PQ8IX06 675 aa11.43□□□□□ -0.58
VPS53-220ENST00000576149 FAM177A1Q8N128 213 aaPredicted RBP11.43□□□□□ -0.58
VPS53-220ENST00000576149 CCDC148Q8NFR7 591 aa11.43□□□□□ -0.58
VPS53-220ENST00000576149 RASGRP4Q8TDF6 673 aa11.43□□□□□ -0.58
VPS53-220ENST00000576149 STAMQ92783 540 aa11.43□□□□□ -0.58
VPS53-220ENST00000576149 FAM163AQ96GL9 167 aaPredicted RBP11.43□□□□□ -0.58
VPS53-220ENST00000576149 MTRQ99707 1265 aa11.43□□□□□ -0.58
VPS53-220ENST00000576149 LZTS2Q9BRK4 669 aa11.43□□□□□ -0.58
VPS53-220ENST00000576149 BARHL2Q9NY43 387 aa11.43□□□□□ -0.58
VPS53-220ENST00000576149 PCDHA6Q9UN73 950 aa11.43□□□□□ -0.58
VPS53-220ENST00000576149 STX8Q9UNK0 236 aa11.43□□□□□ -0.58
VPS53-220ENST00000576149 PCDHA8Q9Y5H6 950 aa11.43□□□□□ -0.58
VPS53-220ENST00000576149 STXBP3O00186 592 aa11.43□□□□□ -0.58
VPS53-220ENST00000576149 GTPBP6O43824 516 aaPredicted RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms