RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 USP17L18D6R9N7 530 aa19.97■□□□□ 0.79
NUP88-210ENST00000574867 USP17L22D6RA61 530 aa19.97■□□□□ 0.79
NUP88-210ENST00000574867 USP17L17D6RBQ6 530 aa19.97■□□□□ 0.79
NUP88-210ENST00000574867 USP17L19D6RCP7 530 aa19.97■□□□□ 0.79
NUP88-210ENST00000574867 USP17L20D6RJB6 530 aa19.97■□□□□ 0.79
NUP88-210ENST00000574867 BMP3P12645 472 aa19.97■□□□□ 0.79
NUP88-210ENST00000574867 RCAN1P53805 252 aa19.97■□□□□ 0.79
NUP88-210ENST00000574867 USP17L24Q0WX57 530 aa19.97■□□□□ 0.79
NUP88-210ENST00000574867 TROAPQ12815 778 aa19.97■□□□□ 0.79
NUP88-210ENST00000574867 TOB2Q14106 344 aaPredicted RBP19.97■□□□□ 0.79
NUP88-210ENST00000574867 IFNL1Q8IU54 200 aa19.97■□□□□ 0.79
NUP88-210ENST00000574867 MAP3K14Q99558 947 aa19.97■□□□□ 0.79
NUP88-210ENST00000574867 PTPN18Q99952 460 aa19.97■□□□□ 0.79
NUP88-210ENST00000574867 PNMA3Q9UL41 463 aa19.97■□□□□ 0.79
NUP88-210ENST00000574867 FAM83BQ5T0W9 1011 aa19.96■□□□□ 0.79
NUP88-210ENST00000574867 GPATCH4Q5T3I0 446 aaKnown RBP19.96■□□□□ 0.79
NUP88-210ENST00000574867 APOA5Q6Q788 366 aa19.96■□□□□ 0.79
NUP88-210ENST00000574867 TANGO6Q9C0B7 1094 aa19.96■□□□□ 0.79
NUP88-210ENST00000574867 MTMR7Q9Y216 660 aa19.96■□□□□ 0.79
NUP88-210ENST00000574867 KLF18A0A0U1RQI7 1052 aa19.96■□□□□ 0.79
NUP88-210ENST00000574867 PDHXO00330 501 aa19.96■□□□□ 0.79
NUP88-210ENST00000574867 IGF2BP3O00425 579 aaKnown RBP eCLIP19.96■□□□□ 0.79
NUP88-210ENST00000574867 ALDH1A1P00352 501 aa19.96■□□□□ 0.79
NUP88-210ENST00000574867 EVCP57679 992 aa19.96■□□□□ 0.79
NUP88-210ENST00000574867 CCDC96Q2M329 555 aa19.96■□□□□ 0.79
NUP88-210ENST00000574867 ASPRV1Q53RT3 343 aa19.96■□□□□ 0.79
NUP88-210ENST00000574867 FAM43AQ8N2R8 423 aa19.96■□□□□ 0.79
NUP88-210ENST00000574867 PARP14Q460N5 1801 aa19.96■□□□□ 0.79
NUP88-210ENST00000574867 OSBPP22059 807 aa19.95■□□□□ 0.78
NUP88-210ENST00000574867 DNAJC5GQ8N7S2 189 aa19.95■□□□□ 0.78
NUP88-210ENST00000574867 NUP88Q99567 741 aaPredicted RBP19.95■□□□□ 0.78
NUP88-210ENST00000574867 ST18O60284 1047 aa19.95■□□□□ 0.78
NUP88-210ENST00000574867 PARP1P09874 1014 aaKnown RBP19.95■□□□□ 0.78
NUP88-210ENST00000574867 AK2P54819 239 aa19.95■□□□□ 0.78
NUP88-210ENST00000574867 IRX3P78415 501 aaPredicted RBP19.95■□□□□ 0.78
NUP88-210ENST00000574867 ZNF543Q08ER8 600 aa19.95■□□□□ 0.78
NUP88-210ENST00000574867 APOBRQ0VD83 1088 aa19.95■□□□□ 0.78
NUP88-210ENST00000574867 GRM4Q14833 912 aa19.95■□□□□ 0.78
NUP88-210ENST00000574867 CATSPERGQ6ZRH7 1159 aa19.95■□□□□ 0.78
NUP88-210ENST00000574867 RASGRP2Q7LDG7 609 aa19.95■□□□□ 0.78
NUP88-210ENST00000574867 BRPF3Q9ULD4 1205 aa19.95■□□□□ 0.78
NUP88-210ENST00000574867 ISY1Q9ULR0 285 aaKnown RBP19.95■□□□□ 0.78
NUP88-210ENST00000574867 MYPNQ86TC9 1320 aa19.94■□□□□ 0.78
NUP88-210ENST00000574867 ZBTB43O43298 467 aa19.94■□□□□ 0.78
NUP88-210ENST00000574867 KIF5BP33176 963 aa19.94■□□□□ 0.78
NUP88-210ENST00000574867 MICU3Q86XE3 530 aa19.94■□□□□ 0.78
NUP88-210ENST00000574867 CTCFLQ8NI51 663 aaPredicted RBP19.94■□□□□ 0.78
NUP88-210ENST00000574867 NUP133Q8WUM0 1156 aa19.94■□□□□ 0.78
NUP88-210ENST00000574867 PARK7Q99497 189 aaKnown RBP19.94■□□□□ 0.78
NUP88-210ENST00000574867 FEM1BQ9UK73 627 aa19.94■□□□□ 0.78
NUP88-210ENST00000574867 NID2Q14112 1375 aa19.94■□□□□ 0.78
NUP88-210ENST00000574867 GOLGA8BA8MQT2 603 aa19.93■□□□□ 0.78
NUP88-210ENST00000574867 PLA2G6O60733 806 aa19.93■□□□□ 0.78
NUP88-210ENST00000574867 STAT2P52630 851 aa19.93■□□□□ 0.78
NUP88-210ENST00000574867 FAM160B2Q86V87 743 aa19.93■□□□□ 0.78
NUP88-210ENST00000574867 MYL10Q9BUA6 226 aa19.93■□□□□ 0.78
NUP88-210ENST00000574867 ASCC2Q9H1I8 757 aaPredicted RBP19.93■□□□□ 0.78
NUP88-210ENST00000574867 FLOT1O75955 427 aa19.93■□□□□ 0.78
NUP88-210ENST00000574867 KCTD1Q719H9 257 aa19.93■□□□□ 0.78
NUP88-210ENST00000574867 RLFQ13129 1914 aa19.93■□□□□ 0.78
NUP88-210ENST00000574867 A0A0G2JMZ2 1700 aa19.92■□□□□ 0.78
NUP88-210ENST00000574867 TMEM232C9JQI7 657 aa19.92■□□□□ 0.78
NUP88-210ENST00000574867 MAP2K1Q02750 393 aaPredicted RBP19.92■□□□□ 0.78
NUP88-210ENST00000574867 PPP2R5BQ15173 497 aa19.92■□□□□ 0.78
NUP88-210ENST00000574867 GTF3C2Q8WUA4 911 aaPredicted RBP19.92■□□□□ 0.78
NUP88-210ENST00000574867 CHURC1Q8WUH1 139 aa19.92■□□□□ 0.78
NUP88-210ENST00000574867 ZNF274Q96GC6 653 aaPredicted RBP19.92■□□□□ 0.78
NUP88-210ENST00000574867 SLF1Q9BQI6 1058 aa19.92■□□□□ 0.78
NUP88-210ENST00000574867 NAP1L2Q9ULW6 460 aaPredicted RBP19.92■□□□□ 0.78
NUP88-210ENST00000574867 FRMPD2Q68DX3 1309 aaPredicted RBP19.92■□□□□ 0.78
NUP88-210ENST00000574867 COG2Q14746 738 aa19.91■□□□□ 0.78
NUP88-210ENST00000574867 TAF1CQ15572 869 aaPredicted RBP19.91■□□□□ 0.78
NUP88-210ENST00000574867 CHMP4CQ96CF2 233 aa19.91■□□□□ 0.78
NUP88-210ENST00000574867 RBM28Q9NW13 759 aaKnown RBP19.91■□□□□ 0.78
NUP88-210ENST00000574867 MAD2L2Q9UI95 211 aa19.91■□□□□ 0.78
NUP88-210ENST00000574867 PPP1R9AQ9ULJ8 1098 aa19.91■□□□□ 0.78
NUP88-210ENST00000574867 PALM3A6NDB9 673 aaPredicted RBP19.91■□□□□ 0.78
NUP88-210ENST00000574867 GOLGA8AA7E2F4 631 aa19.91■□□□□ 0.78
NUP88-210ENST00000574867 GNAQP50148 359 aa19.91■□□□□ 0.78
NUP88-210ENST00000574867 METAP2P50579 478 aaKnown RBP eCLIP19.91■□□□□ 0.78
NUP88-210ENST00000574867 IKQ13123 557 aaPredicted RBP19.91■□□□□ 0.78
NUP88-210ENST00000574867 BTNL9Q6UXG8 535 aa19.91■□□□□ 0.78
NUP88-210ENST00000574867 FANCBQ8NB91 859 aa19.91■□□□□ 0.78
NUP88-210ENST00000574867 SMCR8Q8TEV9 937 aaPredicted RBP19.91■□□□□ 0.78
NUP88-210ENST00000574867 GPCPD1Q9NPB8 672 aa19.91■□□□□ 0.78
NUP88-210ENST00000574867 HOXC10Q9NYD6 342 aa19.91■□□□□ 0.78
NUP88-210ENST00000574867 GOLGA8HP0CJ92 632 aa19.9■□□□□ 0.78
NUP88-210ENST00000574867 LBX2Q6XYB7 198 aa19.9■□□□□ 0.78
NUP88-210ENST00000574867 PRPF38AQ8NAV1 312 aaKnown RBP19.9■□□□□ 0.78
NUP88-210ENST00000574867 CCDC196A0A1B0GTZ2 297 aa19.9■□□□□ 0.78
NUP88-210ENST00000574867 SPDYE16A6NNV3 312 aaPredicted RBP19.9■□□□□ 0.78
NUP88-210ENST00000574867 RXRAP19793 462 aa19.9■□□□□ 0.78
NUP88-210ENST00000574867 PDIA3P30101 505 aaKnown RBP19.9■□□□□ 0.78
NUP88-210ENST00000574867 DSG3P32926 999 aa19.9■□□□□ 0.78
NUP88-210ENST00000574867 HERVK_113P62684 666 aa19.9■□□□□ 0.78
NUP88-210ENST00000574867 RTN1Q16799 776 aa19.9■□□□□ 0.78
NUP88-210ENST00000574867 LZTS2Q9BRK4 669 aa19.9■□□□□ 0.78
NUP88-210ENST00000574867 CFHR5Q9BXR6 569 aa19.9■□□□□ 0.78
NUP88-210ENST00000574867 ZFYVE28Q9HCC9 887 aa19.9■□□□□ 0.78
NUP88-210ENST00000574867 FBXO28Q9NVF7 368 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms