RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 PTPRFP10586 1907 aa12.98□□□□□ -0.33
CHD3-216ENST00000573936 GREB1LQ9C091 1923 aaPredicted RBP12.98□□□□□ -0.33
CHD3-216ENST00000573936 MYPNQ86TC9 1320 aa12.97□□□□□ -0.33
CHD3-216ENST00000573936 SLC27A2O14975 620 aa12.97□□□□□ -0.33
CHD3-216ENST00000573936 GNRH1P01148 92 aa12.97□□□□□ -0.33
CHD3-216ENST00000573936 BCRP11274 1271 aa12.97□□□□□ -0.33
CHD3-216ENST00000573936 TOP1P11387 765 aaKnown RBP12.97□□□□□ -0.33
CHD3-216ENST00000573936 ZKSCAN1P17029 563 aaPredicted RBP12.97□□□□□ -0.33
CHD3-216ENST00000573936 HERVK_113P62684 666 aa12.97□□□□□ -0.33
CHD3-216ENST00000573936 LACTBP83111 547 aaPredicted RBP12.97□□□□□ -0.33
CHD3-216ENST00000573936 FAM110CQ1W6H9 321 aa12.97□□□□□ -0.33
CHD3-216ENST00000573936 SPICE1Q8N0Z3 855 aa12.97□□□□□ -0.33
CHD3-216ENST00000573936 UBAC1Q9BSL1 405 aa12.97□□□□□ -0.33
CHD3-216ENST00000573936 TANGO6Q9C0B7 1094 aa12.97□□□□□ -0.33
CHD3-216ENST00000573936 LAMA4Q16363 1823 aa12.97□□□□□ -0.33
CHD3-216ENST00000573936 ERICH2A1L162 156 aa12.96□□□□□ -0.33
CHD3-216ENST00000573936 H0YGN5 161 aa12.96□□□□□ -0.33
CHD3-216ENST00000573936 NMT2O60551 498 aa12.96□□□□□ -0.33
CHD3-216ENST00000573936 NDUFB10O96000 172 aa12.96□□□□□ -0.33
CHD3-216ENST00000573936 DSG3P32926 999 aa12.96□□□□□ -0.33
CHD3-216ENST00000573936 SART3Q15020 963 aaKnown RBP12.96□□□□□ -0.33
CHD3-216ENST00000573936 KIAA1755Q5JYT7 1200 aa12.96□□□□□ -0.33
CHD3-216ENST00000573936 SLFN13Q68D06 897 aa12.96□□□□□ -0.33
CHD3-216ENST00000573936 LBX2Q6XYB7 198 aa12.96□□□□□ -0.33
CHD3-216ENST00000573936 LRRC47Q8N1G4 583 aaKnown RBP12.96□□□□□ -0.33
CHD3-216ENST00000573936 ANKRD13CQ8N6S4 541 aa12.96□□□□□ -0.33
CHD3-216ENST00000573936 SH3TC2Q8TF17 1288 aa12.96□□□□□ -0.33
CHD3-216ENST00000573936 ANKS1AQ92625 1134 aa12.96□□□□□ -0.33
CHD3-216ENST00000573936 GMCL1Q96IK5 515 aa12.96□□□□□ -0.33
CHD3-216ENST00000573936 ZSCAN10Q96SZ4 725 aaPredicted RBP12.96□□□□□ -0.33
CHD3-216ENST00000573936 RABGAP1Q9Y3P9 1069 aa12.96□□□□□ -0.33
CHD3-216ENST00000573936 FLOT1O75955 427 aa12.95□□□□□ -0.34
CHD3-216ENST00000573936 BMP3P12645 472 aa12.95□□□□□ -0.34
CHD3-216ENST00000573936 HOXD10P28358 340 aa12.95□□□□□ -0.34
CHD3-216ENST00000573936 SLC1A4P43007 532 aa12.95□□□□□ -0.34
CHD3-216ENST00000573936 PRMT2P55345 433 aa12.95□□□□□ -0.34
CHD3-216ENST00000573936 KRT32Q14532 448 aa12.95□□□□□ -0.34
CHD3-216ENST00000573936 TSGA10IPQ3SY00 556 aa12.95□□□□□ -0.34
CHD3-216ENST00000573936 FAM83BQ5T0W9 1011 aa12.95□□□□□ -0.34
CHD3-216ENST00000573936 MB21D1Q8N884 522 aa12.95□□□□□ -0.34
CHD3-216ENST00000573936 GPRC5AQ8NFJ5 357 aa12.95□□□□□ -0.34
CHD3-216ENST00000573936 DCAF4Q8WV16 495 aa12.95□□□□□ -0.34
CHD3-216ENST00000573936 TMEM47Q9BQJ4 181 aa12.95□□□□□ -0.34
CHD3-216ENST00000573936 ZKSCAN3Q9BRR0 538 aa12.95□□□□□ -0.34
CHD3-216ENST00000573936 MTA3Q9BTC8 594 aa12.95□□□□□ -0.34
CHD3-216ENST00000573936 KAT14Q9H8E8 782 aa12.95□□□□□ -0.34
CHD3-216ENST00000573936 MORF4L1Q9UBU8 362 aa12.95□□□□□ -0.34
CHD3-216ENST00000573936 FEM1BQ9UK73 627 aa12.95□□□□□ -0.34
CHD3-216ENST00000573936 TNKSO95271 1327 aa12.94□□□□□ -0.34
CHD3-216ENST00000573936 SPDYE16A6NNV3 312 aaPredicted RBP12.94□□□□□ -0.34
CHD3-216ENST00000573936 FDX1P10109 184 aa12.94□□□□□ -0.34
CHD3-216ENST00000573936 MCCP23508 829 aa12.94□□□□□ -0.34
CHD3-216ENST00000573936 FCGRTP55899 365 aa12.94□□□□□ -0.34
CHD3-216ENST00000573936 CCNA1P78396 465 aa12.94□□□□□ -0.34
CHD3-216ENST00000573936 IFIT1BQ5T764 474 aaKnown RBP12.94□□□□□ -0.34
CHD3-216ENST00000573936 RCSD1Q6JBY9 416 aa12.94□□□□□ -0.34
CHD3-216ENST00000573936 FAM160B2Q86V87 743 aa12.94□□□□□ -0.34
CHD3-216ENST00000573936 NKX2-3Q8TAU0 364 aa12.94□□□□□ -0.34
CHD3-216ENST00000573936 CHURC1Q8WUH1 139 aa12.94□□□□□ -0.34
CHD3-216ENST00000573936 RBPJLQ9UBG7 517 aa12.94□□□□□ -0.34
CHD3-216ENST00000573936 BIN2Q9UBW5 565 aaPredicted RBP12.94□□□□□ -0.34
CHD3-216ENST00000573936 TRIOBPQ9H2D6 2365 aa12.93□□□□□ -0.34
CHD3-216ENST00000573936 SZT2Q5T011 3432 aa12.93□□□□□ -0.34
CHD3-216ENST00000573936 IFIT3O14879 490 aaKnown RBP12.93□□□□□ -0.34
CHD3-216ENST00000573936 PLA2G6O60733 806 aa12.93□□□□□ -0.34
CHD3-216ENST00000573936 FMNL1O95466 1100 aaPredicted RBP12.93□□□□□ -0.34
CHD3-216ENST00000573936 HMGB1P09429 215 aaKnown RBP12.93□□□□□ -0.34
CHD3-216ENST00000573936 CTGFP29279 349 aa12.93□□□□□ -0.34
CHD3-216ENST00000573936 MCM5P33992 734 aa12.93□□□□□ -0.34
CHD3-216ENST00000573936 HSPA4P34932 840 aa12.93□□□□□ -0.34
CHD3-216ENST00000573936 PSMC4P43686 418 aa12.93□□□□□ -0.34
CHD3-216ENST00000573936 ERVK-9P63128 1117 aa12.93□□□□□ -0.34
CHD3-216ENST00000573936 ERVK-24P63145 666 aa12.93□□□□□ -0.34
CHD3-216ENST00000573936 CHRDL2Q6WN34 429 aa12.93□□□□□ -0.34
CHD3-216ENST00000573936 STOX1Q6ZVD7 989 aa12.93□□□□□ -0.34
CHD3-216ENST00000573936 CYB5R4Q7L1T6 521 aa12.93□□□□□ -0.34
CHD3-216ENST00000573936 CCAR1Q8IX12 1150 aaKnown RBP12.93□□□□□ -0.34
CHD3-216ENST00000573936 MB21D2Q8IYB1 491 aaPredicted RBP12.93□□□□□ -0.34
CHD3-216ENST00000573936 TMTC2Q8N394 836 aa12.93□□□□□ -0.34
CHD3-216ENST00000573936 ENAHQ8N8S7 591 aaPredicted RBP12.93□□□□□ -0.34
CHD3-216ENST00000573936 PRPF38AQ8NAV1 312 aaKnown RBP12.93□□□□□ -0.34
CHD3-216ENST00000573936 RAET1EQ8TD07 263 aa12.93□□□□□ -0.34
CHD3-216ENST00000573936 KCNB2Q92953 911 aa12.93□□□□□ -0.34
CHD3-216ENST00000573936 TRIM47Q96LD4 638 aa12.93□□□□□ -0.34
CHD3-216ENST00000573936 NEK1Q96PY6 1258 aa12.93□□□□□ -0.34
CHD3-216ENST00000573936 SLF1Q9BQI6 1058 aa12.93□□□□□ -0.34
CHD3-216ENST00000573936 PAGR1Q9BTK6 254 aa12.93□□□□□ -0.34
CHD3-216ENST00000573936 PPP1R9AQ9ULJ8 1098 aa12.93□□□□□ -0.34
CHD3-216ENST00000573936 CTDP1Q9Y5B0 961 aaPredicted RBP12.93□□□□□ -0.34
CHD3-216ENST00000573936 TMEM232C9JQI7 657 aa12.92□□□□□ -0.34
CHD3-216ENST00000573936 STAT2P52630 851 aa12.92□□□□□ -0.34
CHD3-216ENST00000573936 IKQ13123 557 aaPredicted RBP12.92□□□□□ -0.34
CHD3-216ENST00000573936 WTAPQ15007 396 aa12.92□□□□□ -0.34
CHD3-216ENST00000573936 SEC23AQ15436 765 aa12.92□□□□□ -0.34
CHD3-216ENST00000573936 SAMD1Q6SPF0 538 aaPredicted RBP12.92□□□□□ -0.34
CHD3-216ENST00000573936 PNMA1Q8ND90 353 aa12.92□□□□□ -0.34
CHD3-216ENST00000573936 TMEM87BQ96K49 555 aa12.92□□□□□ -0.34
CHD3-216ENST00000573936 NUP88Q99567 741 aaPredicted RBP12.92□□□□□ -0.34
CHD3-216ENST00000573936 HTATIP2Q9BUP3 242 aa12.92□□□□□ -0.34
CHD3-216ENST00000573936 USP26Q9BXU7 913 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms