RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 FIGNL1Q6PIW4 674 aa11.74□□□□□ -0.53
CIITA-208ENST00000572665 TSPYL6Q8N831 410 aa11.74□□□□□ -0.53
CIITA-208ENST00000572665 TTLL11Q8NHH1 800 aa11.74□□□□□ -0.53
CIITA-208ENST00000572665 DMRTB1Q96MA1 342 aa11.74□□□□□ -0.53
CIITA-208ENST00000572665 MPHOSPH8Q99549 860 aa11.74□□□□□ -0.53
CIITA-208ENST00000572665 ANKRD2Q9GZV1 360 aa11.74□□□□□ -0.53
CIITA-208ENST00000572665 MRS2Q9HD23 443 aa11.74□□□□□ -0.53
CIITA-208ENST00000572665 USP20Q9Y2K6 914 aa11.74□□□□□ -0.53
CIITA-208ENST00000572665 LEMD3Q9Y2U8 911 aa11.74□□□□□ -0.53
CIITA-208ENST00000572665 MED23Q9ULK4 1368 aa11.74□□□□□ -0.53
CIITA-208ENST00000572665 AKAP11Q9UKA4 1901 aa11.74□□□□□ -0.53
CIITA-208ENST00000572665 SHTN1A0MZ66 631 aa11.73□□□□□ -0.53
CIITA-208ENST00000572665 IGKV5-2P06315 115 aa11.73□□□□□ -0.53
CIITA-208ENST00000572665 ITGA6P23229 1130 aa11.73□□□□□ -0.53
CIITA-208ENST00000572665 GRNP28799 593 aaKnown RBP11.73□□□□□ -0.53
CIITA-208ENST00000572665 ZNF280AP59817 542 aaPredicted RBP11.73□□□□□ -0.53
CIITA-208ENST00000572665 FKBP1BP68106 108 aa11.73□□□□□ -0.53
CIITA-208ENST00000572665 WDR63Q8IWG1 891 aa11.73□□□□□ -0.53
CIITA-208ENST00000572665 ABHD8Q96I13 439 aa11.73□□□□□ -0.53
CIITA-208ENST00000572665 PITPNM2Q9BZ72 1349 aa11.73□□□□□ -0.53
CIITA-208ENST00000572665 COA1Q9GZY4 146 aa11.73□□□□□ -0.53
CIITA-208ENST00000572665 GGA3Q9NZ52 723 aa11.73□□□□□ -0.53
CIITA-208ENST00000572665 GPR182O15218 404 aa11.72□□□□□ -0.53
CIITA-208ENST00000572665 ATXN7O15265 892 aaPredicted RBP11.72□□□□□ -0.53
CIITA-208ENST00000572665 TREHO43280 583 aa11.72□□□□□ -0.53
CIITA-208ENST00000572665 RPLP1P05386 114 aaKnown RBP11.72□□□□□ -0.53
CIITA-208ENST00000572665 FAM157BP0CG42 384 aa11.72□□□□□ -0.53
CIITA-208ENST00000572665 NF2P35240 595 aa11.72□□□□□ -0.53
CIITA-208ENST00000572665 CCT4P50991 539 aaKnown RBP11.72□□□□□ -0.53
CIITA-208ENST00000572665 ZNF157P51786 506 aaPredicted RBP11.72□□□□□ -0.53
CIITA-208ENST00000572665 CWF19L2Q2TBE0 894 aaKnown RBP11.72□□□□□ -0.53
CIITA-208ENST00000572665 UBE3BQ7Z3V4 1068 aa11.72□□□□□ -0.53
CIITA-208ENST00000572665 LINS1Q8NG48 757 aa11.72□□□□□ -0.53
CIITA-208ENST00000572665 JARID2Q92833 1246 aaPredicted RBP11.72□□□□□ -0.53
CIITA-208ENST00000572665 PLA2G12BQ9BX93 195 aa11.72□□□□□ -0.53
CIITA-208ENST00000572665 GREM2Q9H772 168 aa11.72□□□□□ -0.53
CIITA-208ENST00000572665 MYOZ2Q9NPC6 264 aa11.72□□□□□ -0.53
CIITA-208ENST00000572665 BRD7Q9NPI1 651 aa11.72□□□□□ -0.53
CIITA-208ENST00000572665 KCNQ5Q9NR82 932 aa11.72□□□□□ -0.53
CIITA-208ENST00000572665 SAGE1Q9NXZ1 904 aa11.72□□□□□ -0.53
CIITA-208ENST00000572665 MINPP1Q9UNW1 487 aa11.72□□□□□ -0.53
CIITA-208ENST00000572665 COL4A1P02462 1669 aa11.71□□□□□ -0.53
CIITA-208ENST00000572665 ADM5C9JUS6 153 aa11.71□□□□□ -0.53
CIITA-208ENST00000572665 EFSO43281 561 aa11.71□□□□□ -0.53
CIITA-208ENST00000572665 EPB42P16452 691 aa11.71□□□□□ -0.53
CIITA-208ENST00000572665 KCNJ4P48050 445 aa11.71□□□□□ -0.53
CIITA-208ENST00000572665 GCKRQ14397 625 aa11.71□□□□□ -0.53
CIITA-208ENST00000572665 COL19A1Q14993 1142 aa11.71□□□□□ -0.53
CIITA-208ENST00000572665 TRIP4Q15650 581 aaPredicted RBP11.71□□□□□ -0.53
CIITA-208ENST00000572665 STRIP1Q5VSL9 837 aa11.71□□□□□ -0.53
CIITA-208ENST00000572665 ANGEL2Q5VTE6 544 aaKnown RBP11.71□□□□□ -0.53
CIITA-208ENST00000572665 CMTR1Q8N1G2 835 aaKnown RBP11.71□□□□□ -0.53
CIITA-208ENST00000572665 DNAAF4Q8WXU2 420 aa11.71□□□□□ -0.53
CIITA-208ENST00000572665 ZNF837Q96EG3 531 aaPredicted RBP11.71□□□□□ -0.53
CIITA-208ENST00000572665 GMCL1Q96IK5 515 aa11.71□□□□□ -0.53
CIITA-208ENST00000572665 HDAC9Q9UKV0 1011 aa11.71□□□□□ -0.53
CIITA-208ENST00000572665 PCDHGC4Q9Y5F7 938 aa11.71□□□□□ -0.53
CIITA-208ENST00000572665 KCNMB2Q9Y691 235 aa11.71□□□□□ -0.53
CIITA-208ENST00000572665 FANCIQ9NVI1 1328 aa11.7□□□□□ -0.54
CIITA-208ENST00000572665 ANKRD18BA2A2Z9 1011 aa11.7□□□□□ -0.54
CIITA-208ENST00000572665 EGFRP00533 1210 aa11.7□□□□□ -0.54
CIITA-208ENST00000572665 DSC3Q14574 896 aa11.7□□□□□ -0.54
CIITA-208ENST00000572665 ALKBH8Q96BT7 664 aaKnown RBP11.7□□□□□ -0.54
CIITA-208ENST00000572665 CDCA5Q96FF9 252 aa11.7□□□□□ -0.54
CIITA-208ENST00000572665 PAPPA2Q9BXP8 1791 aa11.69□□□□□ -0.54
CIITA-208ENST00000572665 ZNF804BA4D1E1 1349 aa11.69□□□□□ -0.54
CIITA-208ENST00000572665 EHHADHQ08426 723 aa11.69□□□□□ -0.54
CIITA-208ENST00000572665 C8orf34Q49A92 452 aa11.69□□□□□ -0.54
CIITA-208ENST00000572665 GMLQ99445 158 aa11.69□□□□□ -0.54
CIITA-208ENST00000572665 NDFIP2Q9NV92 336 aa11.69□□□□□ -0.54
CIITA-208ENST00000572665 CASP8AP2Q9UKL3 1982 aa11.68□□□□□ -0.54
CIITA-208ENST00000572665 DCDC2BA2VCK2 349 aa11.68□□□□□ -0.54
CIITA-208ENST00000572665 CCDC85CA6NKD9 419 aa11.68□□□□□ -0.54
CIITA-208ENST00000572665 PPFIA3O75145 1194 aa11.68□□□□□ -0.54
CIITA-208ENST00000572665 CSF1RP07333 972 aa11.68□□□□□ -0.54
CIITA-208ENST00000572665 TNP2Q05952 138 aa11.68□□□□□ -0.54
CIITA-208ENST00000572665 IFIT5Q13325 482 aaKnown RBP11.68□□□□□ -0.54
CIITA-208ENST00000572665 TTLL5Q6EMB2 1281 aa11.68□□□□□ -0.54
CIITA-208ENST00000572665 G2E3Q7L622 706 aa11.68□□□□□ -0.54
CIITA-208ENST00000572665 TTC16Q8NEE8 873 aa11.68□□□□□ -0.54
CIITA-208ENST00000572665 RBM47A0AV96 593 aaKnown RBP11.67□□□□□ -0.54
CIITA-208ENST00000572665 A6NHS1 94 aa11.67□□□□□ -0.54
CIITA-208ENST00000572665 FAM155AB1AL88 458 aaPredicted RBP11.67□□□□□ -0.54
CIITA-208ENST00000572665 KHNYNO15037 678 aaKnown RBP11.67□□□□□ -0.54
CIITA-208ENST00000572665 BNIP3LO60238 219 aa11.67□□□□□ -0.54
CIITA-208ENST00000572665 VAMP4O75379 141 aa11.67□□□□□ -0.54
CIITA-208ENST00000572665 P4HBP07237 508 aaKnown RBP11.67□□□□□ -0.54
CIITA-208ENST00000572665 KIF23Q02241 960 aaPredicted RBP11.67□□□□□ -0.54
CIITA-208ENST00000572665 CCDC184Q52MB2 194 aa11.67□□□□□ -0.54
CIITA-208ENST00000572665 TAF7LQ5H9L4 462 aa11.67□□□□□ -0.54
CIITA-208ENST00000572665 DACT2Q5SW24 774 aa11.67□□□□□ -0.54
CIITA-208ENST00000572665 FBXO33Q7Z6M2 555 aa11.67□□□□□ -0.54
CIITA-208ENST00000572665 APOBEC3FQ8IUX4 373 aaKnown RBP11.67□□□□□ -0.54
CIITA-208ENST00000572665 KCNH4Q9UQ05 1017 aa11.67□□□□□ -0.54
CIITA-208ENST00000572665 FNDC3AQ9Y2H6 1198 aaKnown RBP11.67□□□□□ -0.54
CIITA-208ENST00000572665 MAPTP10636 758 aaKnown RBP11.66□□□□□ -0.54
CIITA-208ENST00000572665 PLCB3Q01970 1234 aa11.66□□□□□ -0.54
CIITA-208ENST00000572665 EXOSC9Q06265 439 aaKnown RBP11.66□□□□□ -0.54
CIITA-208ENST00000572665 CHRNDQ07001 517 aa11.66□□□□□ -0.54
CIITA-208ENST00000572665 SFSWAPQ12872 951 aaKnown RBP11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms