RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 TMX2Q9Y320 296 aa23.21■■□□□ 1.31
NUP88-203ENST00000572019 GREB1LQ9C091 1923 aaPredicted RBP23.2■■□□□ 1.3
NUP88-203ENST00000572019 ICA1Q05084 483 aa23.2■■□□□ 1.3
NUP88-203ENST00000572019 TTF1Q15361 905 aaPredicted RBP23.2■■□□□ 1.3
NUP88-203ENST00000572019 SIRT2Q8IXJ6 389 aa23.2■■□□□ 1.3
NUP88-203ENST00000572019 SEMA6BQ9H3T3 888 aa23.2■■□□□ 1.3
NUP88-203ENST00000572019 MROH8Q9H579 483 aa23.2■■□□□ 1.3
NUP88-203ENST00000572019 MCM3APO60318 1980 aa23.2■■□□□ 1.3
NUP88-203ENST00000572019 MBD4O95243 580 aa23.19■■□□□ 1.3
NUP88-203ENST00000572019 TLE2Q04725 743 aa23.19■■□□□ 1.3
NUP88-203ENST00000572019 MB21D1Q8N884 522 aa23.19■■□□□ 1.3
NUP88-203ENST00000572019 PGK1P00558 417 aa23.18■■□□□ 1.3
NUP88-203ENST00000572019 ABRAQ8N0Z2 381 aa23.18■■□□□ 1.3
NUP88-203ENST00000572019 MYLIPQ8WY64 445 aa23.18■■□□□ 1.3
NUP88-203ENST00000572019 SWAP70Q9UH65 585 aa23.18■■□□□ 1.3
NUP88-203ENST00000572019 ADAMTS5Q9UNA0 930 aa23.18■■□□□ 1.3
NUP88-203ENST00000572019 SPTBN5Q9NRC6 3674 aaKnown RBP23.18■■□□□ 1.3
NUP88-203ENST00000572019 EEF2P13639 858 aaKnown RBP23.17■■□□□ 1.3
NUP88-203ENST00000572019 ADD2P35612 726 aa23.17■■□□□ 1.3
NUP88-203ENST00000572019 CDK8P49336 464 aa23.17■■□□□ 1.3
NUP88-203ENST00000572019 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.17■■□□□ 1.3
NUP88-203ENST00000572019 BOLA2Q9H3K6 86 aa23.17■■□□□ 1.3
NUP88-203ENST00000572019 ARHGEF10LQ9HCE6 1279 aa23.17■■□□□ 1.3
NUP88-203ENST00000572019 PHF24Q9UPV7 400 aa23.17■■□□□ 1.3
NUP88-203ENST00000572019 FCER1AP12319 257 aa23.16■■□□□ 1.3
NUP88-203ENST00000572019 HNRNPUQ00839 825 aaKnown RBP eCLIP23.16■■□□□ 1.3
NUP88-203ENST00000572019 C12orf60Q5U649 245 aa23.16■■□□□ 1.3
NUP88-203ENST00000572019 REPS2Q8NFH8 660 aa23.16■■□□□ 1.3
NUP88-203ENST00000572019 XPNPEP3Q9NQH7 507 aa23.16■■□□□ 1.3
NUP88-203ENST00000572019 USP17L12C9JPN9 530 aa23.15■■□□□ 1.3
NUP88-203ENST00000572019 USP17L21D6R901 530 aa23.15■■□□□ 1.3
NUP88-203ENST00000572019 WDR46O15213 610 aaKnown RBP23.15■■□□□ 1.3
NUP88-203ENST00000572019 ZNF792Q3KQV3 632 aa23.15■■□□□ 1.3
NUP88-203ENST00000572019 C1orf53Q5VUE5 145 aa23.15■■□□□ 1.3
NUP88-203ENST00000572019 CLASRPQ8N2M8 674 aaKnown RBP23.15■■□□□ 1.3
NUP88-203ENST00000572019 MAFAQ8NHW3 353 aaPredicted RBP23.15■■□□□ 1.3
NUP88-203ENST00000572019 MMP19Q99542 508 aa23.15■■□□□ 1.3
NUP88-203ENST00000572019 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.15■■□□□ 1.3
NUP88-203ENST00000572019 ZNF865P0CJ78 1059 aaPredicted RBP23.14■■□□□ 1.29
NUP88-203ENST00000572019 IRX5P78411 483 aaPredicted RBP23.14■■□□□ 1.29
NUP88-203ENST00000572019 RIOX2Q8IUF8 465 aa23.14■■□□□ 1.29
NUP88-203ENST00000572019 KIF1BPQ96EK5 621 aa23.14■■□□□ 1.29
NUP88-203ENST00000572019 PAG1Q9NWQ8 432 aa23.14■■□□□ 1.29
NUP88-203ENST00000572019 SLC5A4Q9NY91 659 aa23.14■■□□□ 1.29
NUP88-203ENST00000572019 ZNF214Q9UL59 606 aaPredicted RBP23.14■■□□□ 1.29
NUP88-203ENST00000572019 MYH4Q9Y623 1939 aa23.14■■□□□ 1.29
NUP88-203ENST00000572019 IFIT2P09913 472 aaKnown RBP23.13■■□□□ 1.29
NUP88-203ENST00000572019 SMAD3P84022 425 aaKnown RBP23.13■■□□□ 1.29
NUP88-203ENST00000572019 FAM83BQ5T0W9 1011 aa23.13■■□□□ 1.29
NUP88-203ENST00000572019 C16orf86Q6ZW13 317 aa23.13■■□□□ 1.29
NUP88-203ENST00000572019 NUP88Q99567 741 aaPredicted RBP23.13■■□□□ 1.29
NUP88-203ENST00000572019 TINF2Q9BSI4 451 aa23.13■■□□□ 1.29
NUP88-203ENST00000572019 ATP8A2Q9NTI2 1148 aa23.13■■□□□ 1.29
NUP88-203ENST00000572019 A0A1W2PQ45 241 aaPredicted RBP23.12■■□□□ 1.29
NUP88-203ENST00000572019 A0A1W2PQY0 241 aa23.12■■□□□ 1.29
NUP88-203ENST00000572019 VWA5AO00534 786 aa23.12■■□□□ 1.29
NUP88-203ENST00000572019 PQBP1O60828 265 aaKnown RBP23.12■■□□□ 1.29
NUP88-203ENST00000572019 CLTBP09497 229 aa23.12■■□□□ 1.29
NUP88-203ENST00000572019 RARBP10826 455 aa23.12■■□□□ 1.29
NUP88-203ENST00000572019 HSP90AB4PQ58FF6 505 aa23.12■■□□□ 1.29
NUP88-203ENST00000572019 PPP1R9AQ9ULJ8 1098 aa23.12■■□□□ 1.29
NUP88-203ENST00000572019 ZBED9Q6R2W3 1325 aa23.11■■□□□ 1.29
NUP88-203ENST00000572019 ADAMTS4O75173 837 aa23.11■■□□□ 1.29
NUP88-203ENST00000572019 SLC25A27O95847 323 aa23.11■■□□□ 1.29
NUP88-203ENST00000572019 CTR9Q6PD62 1173 aa23.11■■□□□ 1.29
NUP88-203ENST00000572019 CCDC17Q96LX7 622 aa23.11■■□□□ 1.29
NUP88-203ENST00000572019 RIPK3Q9Y572 518 aa23.11■■□□□ 1.29
NUP88-203ENST00000572019 ROBO3Q96MS0 1386 aa23.11■■□□□ 1.29
NUP88-203ENST00000572019 MYO9BQ13459 2157 aa23.1■■□□□ 1.29
NUP88-203ENST00000572019 MYADML2A6NDP7 307 aa23.1■■□□□ 1.29
NUP88-203ENST00000572019 KIAA0355O15063 1070 aa23.1■■□□□ 1.29
NUP88-203ENST00000572019 STAT3P40763 770 aa23.1■■□□□ 1.29
NUP88-203ENST00000572019 RNPC3Q96LT9 517 aaKnown RBP23.1■■□□□ 1.29
NUP88-203ENST00000572019 HAUS7Q99871 368 aa23.1■■□□□ 1.29
NUP88-203ENST00000572019 PUS7LQ9H0K6 701 aaKnown RBP23.1■■□□□ 1.29
NUP88-203ENST00000572019 SH2D4AQ9H788 454 aa23.1■■□□□ 1.29
NUP88-203ENST00000572019 TACC3Q9Y6A5 838 aa23.1■■□□□ 1.29
NUP88-203ENST00000572019 RAD21O60216 631 aa23.09■■□□□ 1.29
NUP88-203ENST00000572019 ATP5JP18859 108 aa23.09■■□□□ 1.29
NUP88-203ENST00000572019 STK11IPQ8N1F8 1099 aa23.09■■□□□ 1.29
NUP88-203ENST00000572019 NRBP1Q9UHY1 535 aa23.09■■□□□ 1.29
NUP88-203ENST00000572019 SLC4A4Q9Y6R1 1079 aa23.09■■□□□ 1.29
NUP88-203ENST00000572019 TTC28Q96AY4 2481 aa23.09■■□□□ 1.29
NUP88-203ENST00000572019 ADCY6O43306 1168 aa23.08■■□□□ 1.29
NUP88-203ENST00000572019 SNAI1O95863 264 aaPredicted RBP23.08■■□□□ 1.29
NUP88-203ENST00000572019 FAAP100Q0VG06 881 aa23.08■■□□□ 1.29
NUP88-203ENST00000572019 KCTD2Q14681 263 aa23.08■■□□□ 1.29
NUP88-203ENST00000572019 RNF180Q86T96 592 aa23.08■■□□□ 1.29
NUP88-203ENST00000572019 USP38Q8NB14 1042 aa23.08■■□□□ 1.29
NUP88-203ENST00000572019 KANSL2Q9H9L4 492 aa23.08■■□□□ 1.29
NUP88-203ENST00000572019 ZBTB40Q9NUA8 1239 aa23.08■■□□□ 1.29
NUP88-203ENST00000572019 DIS3Q9Y2L1 958 aaKnown RBP23.08■■□□□ 1.29
NUP88-203ENST00000572019 COG6Q9Y2V7 657 aa23.08■■□□□ 1.29
NUP88-203ENST00000572019 SYNRGQ9UMZ2 1314 aa23.08■■□□□ 1.28
NUP88-203ENST00000572019 FOSL2P15408 326 aa23.07■■□□□ 1.28
NUP88-203ENST00000572019 AKR1A1P14550 325 aa23.06■■□□□ 1.28
NUP88-203ENST00000572019 RAG1P15918 1043 aa23.06■■□□□ 1.28
NUP88-203ENST00000572019 ACLYP53396 1101 aa23.06■■□□□ 1.28
NUP88-203ENST00000572019 GRIN2CQ14957 1233 aa23.06■■□□□ 1.28
NUP88-203ENST00000572019 UBE3CQ15386 1083 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms