RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 PPP2R2DQ66LE6 453 aa22.18■■□□□ 1.14
CLK3-227ENST00000570296 NCAPG2Q86XI2 1143 aa22.18■■□□□ 1.14
CLK3-227ENST00000570296 HDAC5Q9UQL6 1122 aa22.18■■□□□ 1.14
CLK3-227ENST00000570296 BRWD1Q9NSI6 2320 aa22.17■■□□□ 1.14
CLK3-227ENST00000570296 SYNRGQ9UMZ2 1314 aa22.17■■□□□ 1.14
CLK3-227ENST00000570296 PI4K2BG5E9Z4 385 aa22.17■■□□□ 1.14
CLK3-227ENST00000570296 SMIM22K7EJ46 135 aa22.17■■□□□ 1.14
CLK3-227ENST00000570296 ZNF865P0CJ78 1059 aaPredicted RBP22.17■■□□□ 1.14
CLK3-227ENST00000570296 TFCP2Q12800 502 aa22.17■■□□□ 1.14
CLK3-227ENST00000570296 CERKLQ49MI3 558 aaPredicted RBP22.17■■□□□ 1.14
CLK3-227ENST00000570296 KLHDC9Q8NEP7 349 aa22.17■■□□□ 1.14
CLK3-227ENST00000570296 NEUROD6Q96NK8 337 aa22.17■■□□□ 1.14
CLK3-227ENST00000570296 EHD4Q9H223 541 aa22.17■■□□□ 1.14
CLK3-227ENST00000570296 CABP5Q9NP86 173 aa22.17■■□□□ 1.14
CLK3-227ENST00000570296 SERPINB13Q9UIV8 391 aa22.17■■□□□ 1.14
CLK3-227ENST00000570296 DIS3Q9Y2L1 958 aaKnown RBP22.17■■□□□ 1.14
CLK3-227ENST00000570296 FGBP02675 491 aa22.16■■□□□ 1.14
CLK3-227ENST00000570296 TAL1P17542 331 aaPredicted RBP22.16■■□□□ 1.14
CLK3-227ENST00000570296 MCAMP43121 646 aa22.16■■□□□ 1.14
CLK3-227ENST00000570296 KCNA10Q16322 511 aa22.16■■□□□ 1.14
CLK3-227ENST00000570296 CCDC184Q52MB2 194 aa22.16■■□□□ 1.14
CLK3-227ENST00000570296 CCSAPQ6IQ19 270 aaPredicted RBP22.16■■□□□ 1.14
CLK3-227ENST00000570296 KHSRPQ92945 711 aaKnown RBP eCLIP22.16■■□□□ 1.14
CLK3-227ENST00000570296 LENG1Q96BZ8 264 aaPredicted RBP22.16■■□□□ 1.14
CLK3-227ENST00000570296 GLT1D1Q96MS3 346 aa22.16■■□□□ 1.14
CLK3-227ENST00000570296 TANGO6Q9C0B7 1094 aa22.16■■□□□ 1.14
CLK3-227ENST00000570296 GTPBP6O43824 516 aaPredicted RBP22.15■■□□□ 1.14
CLK3-227ENST00000570296 UQCRFS1P1P0C7P4 283 aa22.15■■□□□ 1.14
CLK3-227ENST00000570296 PLS1Q14651 629 aa22.15■■□□□ 1.14
CLK3-227ENST00000570296 ADGRA1Q86SQ6 560 aa22.15■■□□□ 1.14
CLK3-227ENST00000570296 PPP1R12CQ9BZL4 782 aa22.15■■□□□ 1.14
CLK3-227ENST00000570296 CNPY2Q9Y2B0 182 aa22.15■■□□□ 1.14
CLK3-227ENST00000570296 PCDHA11Q9Y5I1 949 aa22.15■■□□□ 1.14
CLK3-227ENST00000570296 MTCH2Q9Y6C9 303 aa22.15■■□□□ 1.14
CLK3-227ENST00000570296 PRR33A8MZF0 331 aa22.14■■□□□ 1.13
CLK3-227ENST00000570296 IGSF3O75054 1194 aa22.14■■□□□ 1.13
CLK3-227ENST00000570296 SLC25A27O95847 323 aa22.14■■□□□ 1.13
CLK3-227ENST00000570296 PARP14Q460N5 1801 aa22.13■■□□□ 1.13
CLK3-227ENST00000570296 ARVCFO00192 962 aa22.13■■□□□ 1.13
CLK3-227ENST00000570296 TLR3O15455 904 aaKnown RBP22.13■■□□□ 1.13
CLK3-227ENST00000570296 CST5P28325 142 aaPredicted RBP22.13■■□□□ 1.13
CLK3-227ENST00000570296 DSG3P32926 999 aa22.13■■□□□ 1.13
CLK3-227ENST00000570296 FAM126BQ8IXS8 530 aa22.13■■□□□ 1.13
CLK3-227ENST00000570296 MYO5AQ9Y4I1 1855 aaKnown RBP22.12■■□□□ 1.13
CLK3-227ENST00000570296 A0A0U1RQG5 324 aaPredicted RBP22.12■■□□□ 1.13
CLK3-227ENST00000570296 GUCY1A2P33402 732 aa22.12■■□□□ 1.13
CLK3-227ENST00000570296 ZNF792Q3KQV3 632 aa22.12■■□□□ 1.13
CLK3-227ENST00000570296 PCSK9Q8NBP7 692 aaKnown RBP22.12■■□□□ 1.13
CLK3-227ENST00000570296 HLA-CQ95604 372 aa22.12■■□□□ 1.13
CLK3-227ENST00000570296 MMP19Q99542 508 aa22.12■■□□□ 1.13
CLK3-227ENST00000570296 CYP2C18P33260 490 aa22.11■■□□□ 1.13
CLK3-227ENST00000570296 RABGGTBP53611 331 aa22.11■■□□□ 1.13
CLK3-227ENST00000570296 FAM184BQ9ULE4 1060 aa22.11■■□□□ 1.13
CLK3-227ENST00000570296 COL11A1P12107 1806 aaPredicted RBP22.1■■□□□ 1.13
CLK3-227ENST00000570296 DUSP11O75319 330 aaKnown RBP22.1■■□□□ 1.13
CLK3-227ENST00000570296 PGK2P07205 417 aa22.1■■□□□ 1.13
CLK3-227ENST00000570296 KCTD2Q14681 263 aa22.1■■□□□ 1.13
CLK3-227ENST00000570296 OTOP2Q7RTS6 562 aa22.1■■□□□ 1.13
CLK3-227ENST00000570296 TTC6Q86TZ1 520 aa22.1■■□□□ 1.13
CLK3-227ENST00000570296 MSL3Q8N5Y2 521 aaKnown RBP22.1■■□□□ 1.13
CLK3-227ENST00000570296 CDCA7LQ96GN5 454 aa22.1■■□□□ 1.13
CLK3-227ENST00000570296 SLC4A7Q9Y6M7 1214 aa22.1■■□□□ 1.13
CLK3-227ENST00000570296 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.1■■□□□ 1.13
CLK3-227ENST00000570296 CACNA1AO00555 2505 aa22.09■■□□□ 1.13
CLK3-227ENST00000570296 A0A1W2PRG0 241 aa22.09■■□□□ 1.13
CLK3-227ENST00000570296 FLOT1O75955 427 aa22.09■■□□□ 1.13
CLK3-227ENST00000570296 ASGR1P07306 291 aa22.09■■□□□ 1.13
CLK3-227ENST00000570296 MYOGP15173 224 aa22.09■■□□□ 1.13
CLK3-227ENST00000570296 SHMT1P34896 483 aa22.09■■□□□ 1.13
CLK3-227ENST00000570296 NHLH1Q02575 133 aa22.09■■□□□ 1.13
CLK3-227ENST00000570296 SEPT2Q15019 361 aa22.09■■□□□ 1.13
CLK3-227ENST00000570296 CERS3Q8IU89 383 aa22.09■■□□□ 1.13
CLK3-227ENST00000570296 SSH1Q8WYL5 1049 aa22.09■■□□□ 1.13
CLK3-227ENST00000570296 VTI1AQ96AJ9 217 aa22.09■■□□□ 1.13
CLK3-227ENST00000570296 ATG4CQ96DT6 458 aa22.09■■□□□ 1.13
CLK3-227ENST00000570296 MYADML2A6NDP7 307 aa22.08■■□□□ 1.13
CLK3-227ENST00000570296 CD4P01730 458 aa22.08■■□□□ 1.13
CLK3-227ENST00000570296 DYNLL1P63167 89 aaKnown RBP22.08■■□□□ 1.13
CLK3-227ENST00000570296 KCNH6Q9H252 994 aa22.08■■□□□ 1.13
CLK3-227ENST00000570296 WDFY4Q6ZS81 3184 aa22.08■■□□□ 1.12
CLK3-227ENST00000570296 USP5P45974 858 aa22.07■■□□□ 1.12
CLK3-227ENST00000570296 TMEM132BQ14DG7 1078 aa22.07■■□□□ 1.12
CLK3-227ENST00000570296 HIPK3Q9H422 1215 aa22.07■■□□□ 1.12
CLK3-227ENST00000570296 SPC25Q9HBM1 224 aa22.07■■□□□ 1.12
CLK3-227ENST00000570296 C6orf222P0C671 652 aaPredicted RBP22.06■■□□□ 1.12
CLK3-227ENST00000570296 RIOX2Q8IUF8 465 aa22.06■■□□□ 1.12
CLK3-227ENST00000570296 UPF3AQ9H1J1 476 aaKnown RBP22.06■■□□□ 1.12
CLK3-227ENST00000570296 CD320Q9NPF0 282 aa22.06■■□□□ 1.12
CLK3-227ENST00000570296 SNRKQ9NRH2 765 aa22.06■■□□□ 1.12
CLK3-227ENST00000570296 RFXAPO00287 272 aa22.05■■□□□ 1.12
CLK3-227ENST00000570296 SRGAP3O43295 1099 aa22.05■■□□□ 1.12
CLK3-227ENST00000570296 ATP2A2P16615 1042 aaKnown RBP22.05■■□□□ 1.12
CLK3-227ENST00000570296 COPB2P35606 906 aa22.05■■□□□ 1.12
CLK3-227ENST00000570296 TMEM67Q5HYA8 995 aa22.05■■□□□ 1.12
CLK3-227ENST00000570296 RPUSD2Q8IZ73 545 aaKnown RBP22.05■■□□□ 1.12
CLK3-227ENST00000570296 CYP2E1P05181 493 aaPredicted RBP22.04■■□□□ 1.12
CLK3-227ENST00000570296 KIAA1755Q5JYT7 1200 aa22.04■■□□□ 1.12
CLK3-227ENST00000570296 ZHX1Q9UKY1 873 aaPredicted RBP22.04■■□□□ 1.12
CLK3-227ENST00000570296 ADAMTS5Q9UNA0 930 aa22.04■■□□□ 1.12
CLK3-227ENST00000570296 SNAI1O95863 264 aaPredicted RBP22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms