RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 APOBRQ0VD83 1088 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 FUT2Q10981 343 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 GRM1Q13255 1194 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 GRM4Q14833 912 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 WTAPQ15007 396 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 CCDC178Q5BJE1 867 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 FAM83BQ5T0W9 1011 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 IFIT1BQ5T764 474 aaKnown RBP10.9□□□□□ -0.66
VPS35-211ENST00000569950 SLFN13Q68D06 897 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 TTBK2Q6IQ55 1244 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 APOA5Q6Q788 366 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 CATSPERGQ6ZRH7 1159 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 NBPF11Q86T75 865 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 ZNF654Q8IZM8 581 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 STAG2Q8N3U4 1231 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 JMYQ8N9B5 988 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 REPS2Q8NFH8 660 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 LPAR1Q92633 364 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 BRF1Q92994 677 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 LARP6Q9BRS8 491 aaKnown RBP10.9□□□□□ -0.66
VPS35-211ENST00000569950 CPVLQ9H3G5 476 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 RPAP3Q9H6T3 665 aaPredicted RBP10.9□□□□□ -0.66
VPS35-211ENST00000569950 MAD2L2Q9UI95 211 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 ADAMTS5Q9UNA0 930 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 SLC45A1Q9Y2W3 748 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 CYP46A1Q9Y6A2 500 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 PLXNB2O15031 1838 aa10.9□□□□□ -0.66
VPS35-211ENST00000569950 PALM3A6NDB9 673 aaPredicted RBP10.89□□□□□ -0.67
VPS35-211ENST00000569950 SPDYE16A6NNV3 312 aaPredicted RBP10.89□□□□□ -0.67
VPS35-211ENST00000569950 CNMDO75829 334 aa10.89□□□□□ -0.67
VPS35-211ENST00000569950 RXRAP19793 462 aa10.89□□□□□ -0.67
VPS35-211ENST00000569950 NEK4P51957 841 aa10.89□□□□□ -0.67
VPS35-211ENST00000569950 BTNL9Q6UXG8 535 aa10.89□□□□□ -0.67
VPS35-211ENST00000569950 GADL1Q6ZQY3 521 aa10.89□□□□□ -0.67
VPS35-211ENST00000569950 PAXIP1Q6ZW49 1069 aaPredicted RBP10.89□□□□□ -0.67
VPS35-211ENST00000569950 KCTD1Q719H9 257 aa10.89□□□□□ -0.67
VPS35-211ENST00000569950 RAB11FIP4Q86YS3 637 aa10.89□□□□□ -0.67
VPS35-211ENST00000569950 CHMP4CQ96CF2 233 aa10.89□□□□□ -0.67
VPS35-211ENST00000569950 FEZ1Q99689 392 aa10.89□□□□□ -0.67
VPS35-211ENST00000569950 CFHR5Q9BXR6 569 aa10.89□□□□□ -0.67
VPS35-211ENST00000569950 ASCC2Q9H1I8 757 aaPredicted RBP10.89□□□□□ -0.67
VPS35-211ENST00000569950 SH2D4AQ9H788 454 aa10.89□□□□□ -0.67
VPS35-211ENST00000569950 TPCN1Q9ULQ1 816 aa10.89□□□□□ -0.67
VPS35-211ENST00000569950 PDHXO00330 501 aa10.88□□□□□ -0.67
VPS35-211ENST00000569950 CYTH3O43739 400 aa10.88□□□□□ -0.67
VPS35-211ENST00000569950 PLA2G6O60733 806 aa10.88□□□□□ -0.67
VPS35-211ENST00000569950 DDAH1O94760 285 aa10.88□□□□□ -0.67
VPS35-211ENST00000569950 GOLGA8HP0CJ92 632 aa10.88□□□□□ -0.67
VPS35-211ENST00000569950 CYP2C8P10632 490 aa10.88□□□□□ -0.67
VPS35-211ENST00000569950 PDIA3P30101 505 aaKnown RBP10.88□□□□□ -0.67
VPS35-211ENST00000569950 CDC27P30260 824 aa10.88□□□□□ -0.67
VPS35-211ENST00000569950 INHBEP58166 350 aa10.88□□□□□ -0.67
VPS35-211ENST00000569950 NTRK3Q16288 839 aa10.88□□□□□ -0.67
VPS35-211ENST00000569950 PPP4R3BQ5MIZ7 849 aa10.88□□□□□ -0.67
VPS35-211ENST00000569950 LBX2Q6XYB7 198 aa10.88□□□□□ -0.67
VPS35-211ENST00000569950 FASTKD5Q7L8L6 764 aaKnown RBP10.88□□□□□ -0.67
VPS35-211ENST00000569950 DCAF4Q8WV16 495 aa10.88□□□□□ -0.67
VPS35-211ENST00000569950 P2RX7Q99572 595 aaKnown RBP10.88□□□□□ -0.67
VPS35-211ENST00000569950 KAT14Q9H8E8 782 aa10.88□□□□□ -0.67
VPS35-211ENST00000569950 GOPCQ9HD26 462 aa10.88□□□□□ -0.67
VPS35-211ENST00000569950 TXNRD2Q9NNW7 524 aa10.88□□□□□ -0.67
VPS35-211ENST00000569950 ZCCHC17Q9NP64 241 aaKnown RBP10.88□□□□□ -0.67
VPS35-211ENST00000569950 PDRG1Q9NUG6 133 aa10.88□□□□□ -0.67
VPS35-211ENST00000569950 RNF186Q9NXI6 227 aa10.88□□□□□ -0.67
VPS35-211ENST00000569950 ZNFX1Q9P2E3 1918 aaKnown RBP10.88□□□□□ -0.67
VPS35-211ENST00000569950 ZNF536O15090 1300 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 FRMPD2Q68DX3 1309 aaPredicted RBP10.87□□□□□ -0.67
VPS35-211ENST00000569950 KLF18A0A0U1RQI7 1052 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 USP17L15C9J2P7 530 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 USP17L13C9JLJ4 530 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 USP17L11C9JVI0 530 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 USP17L18D6R9N7 530 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 USP17L22D6RA61 530 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 USP17L17D6RBQ6 530 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 USP17L19D6RCP7 530 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 USP17L20D6RJB6 530 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 PLEKHA8P1O95397 391 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 BCRP11274 1271 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 BMP3P12645 472 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 DSG3P32926 999 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 RCAN1P53805 252 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 USP17L24Q0WX57 530 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 SREBF2Q12772 1141 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 CRHR2Q13324 411 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 RABEP1Q15276 862 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 ME3Q16798 604 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 MTMR8Q96EF0 704 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 MAP3K14Q99558 947 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 WBP1LQ9NX94 342 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 TMOD4Q9NZQ9 345 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 RBPJLQ9UBG7 517 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 PPP1R9AQ9ULJ8 1098 aa10.87□□□□□ -0.67
VPS35-211ENST00000569950 MYPNQ86TC9 1320 aa10.86□□□□□ -0.67
VPS35-211ENST00000569950 RBBP6Q7Z6E9 1792 aaKnown RBP10.86□□□□□ -0.67
VPS35-211ENST00000569950 TMEM232C9JQI7 657 aa10.86□□□□□ -0.67
VPS35-211ENST00000569950 DTNBO60941 627 aa10.86□□□□□ -0.67
VPS35-211ENST00000569950 CTDNEP1O95476 244 aa10.86□□□□□ -0.67
VPS35-211ENST00000569950 TAL1P17542 331 aaPredicted RBP10.86□□□□□ -0.67
VPS35-211ENST00000569950 SLC16A2P36021 539 aa10.86□□□□□ -0.67
VPS35-211ENST00000569950 SLC1A4P43007 532 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms