RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 CCAR1Q8IX12 1150 aaKnown RBP15.46■□□□□ 0.07
CNOT1-220ENST00000569916 LRRC47Q8N1G4 583 aaKnown RBP15.46■□□□□ 0.07
CNOT1-220ENST00000569916 MB21D1Q8N884 522 aa15.46■□□□□ 0.07
CNOT1-220ENST00000569916 USP6NLQ92738 828 aa15.46■□□□□ 0.07
CNOT1-220ENST00000569916 NUP88Q99567 741 aaPredicted RBP15.46■□□□□ 0.07
CNOT1-220ENST00000569916 NUDT12Q9BQG2 462 aa15.46■□□□□ 0.07
CNOT1-220ENST00000569916 NBPF3Q9H094 633 aa15.46■□□□□ 0.07
CNOT1-220ENST00000569916 IL25Q9H293 177 aa15.46■□□□□ 0.07
CNOT1-220ENST00000569916 HAND2P61296 217 aa15.45■□□□□ 0.06
CNOT1-220ENST00000569916 GMCL1P1Q8NEA9 526 aa15.45■□□□□ 0.06
CNOT1-220ENST00000569916 TRIB2Q92519 343 aa15.45■□□□□ 0.06
CNOT1-220ENST00000569916 MOV10L1Q9BXT6 1211 aaKnown RBP15.45■□□□□ 0.06
CNOT1-220ENST00000569916 SPATC1LQ9H0A9 340 aa15.45■□□□□ 0.06
CNOT1-220ENST00000569916 UNC93B1Q9H1C4 597 aa15.45■□□□□ 0.06
CNOT1-220ENST00000569916 IL17RBQ9NRM6 502 aa15.45■□□□□ 0.06
CNOT1-220ENST00000569916 PPP1R9AQ9ULJ8 1098 aa15.45■□□□□ 0.06
CNOT1-220ENST00000569916 ADAMTS5Q9UNA0 930 aa15.45■□□□□ 0.06
CNOT1-220ENST00000569916 FRMPD3Q5JV73 1810 aa15.45■□□□□ 0.06
CNOT1-220ENST00000569916 NMT2O60551 498 aa15.44■□□□□ 0.06
CNOT1-220ENST00000569916 HMGCRP04035 888 aa15.44■□□□□ 0.06
CNOT1-220ENST00000569916 CYP2B6P20813 491 aa15.44■□□□□ 0.06
CNOT1-220ENST00000569916 RGS2P41220 211 aa15.44■□□□□ 0.06
CNOT1-220ENST00000569916 WDR78Q5VTH9 848 aa15.44■□□□□ 0.06
CNOT1-220ENST00000569916 SAMD1Q6SPF0 538 aaPredicted RBP15.44■□□□□ 0.06
CNOT1-220ENST00000569916 TBC1D10CQ8IV04 446 aa15.44■□□□□ 0.06
CNOT1-220ENST00000569916 SHCBP1Q8NEM2 672 aa15.44■□□□□ 0.06
CNOT1-220ENST00000569916 STAG1Q8WVM7 1258 aa15.44■□□□□ 0.06
CNOT1-220ENST00000569916 SHISA4Q96DD7 197 aa15.44■□□□□ 0.06
CNOT1-220ENST00000569916 APBA2Q99767 749 aa15.44■□□□□ 0.06
CNOT1-220ENST00000569916 DSCC1Q9BVC3 393 aa15.44■□□□□ 0.06
CNOT1-220ENST00000569916 CWC22Q9HCG8 908 aaKnown RBP15.44■□□□□ 0.06
CNOT1-220ENST00000569916 ZNFX1Q9P2E3 1918 aaKnown RBP15.44■□□□□ 0.06
CNOT1-220ENST00000569916 RAD50Q92878 1312 aa15.43■□□□□ 0.06
CNOT1-220ENST00000569916 SLC15A5A6NIM6 579 aa15.43■□□□□ 0.06
CNOT1-220ENST00000569916 RANBP6O60518 1105 aaKnown RBP15.43■□□□□ 0.06
CNOT1-220ENST00000569916 XRCC5P13010 732 aaKnown RBP15.43■□□□□ 0.06
CNOT1-220ENST00000569916 PTPREP23469 700 aa15.43■□□□□ 0.06
CNOT1-220ENST00000569916 NOVP48745 357 aa15.43■□□□□ 0.06
CNOT1-220ENST00000569916 TRIM32Q13049 653 aa15.43■□□□□ 0.06
CNOT1-220ENST00000569916 MAP2K5Q13163 448 aa15.43■□□□□ 0.06
CNOT1-220ENST00000569916 GRB14Q14449 540 aa15.43■□□□□ 0.06
CNOT1-220ENST00000569916 TMEM132BQ14DG7 1078 aa15.43■□□□□ 0.06
CNOT1-220ENST00000569916 REPS2Q8NFH8 660 aa15.43■□□□□ 0.06
CNOT1-220ENST00000569916 SLF1Q9BQI6 1058 aa15.43■□□□□ 0.06
CNOT1-220ENST00000569916 RNF208Q9H0X6 261 aa15.43■□□□□ 0.06
CNOT1-220ENST00000569916 TOMM22Q9NS69 142 aa15.43■□□□□ 0.06
CNOT1-220ENST00000569916 STX8Q9UNK0 236 aa15.43■□□□□ 0.06
CNOT1-220ENST00000569916 PLXNA1Q9UIW2 1896 aa15.43■□□□□ 0.06
CNOT1-220ENST00000569916 VWA5AO00534 786 aa15.42■□□□□ 0.06
CNOT1-220ENST00000569916 GJB1P08034 283 aa15.42■□□□□ 0.06
CNOT1-220ENST00000569916 PCP11498 1178 aaKnown RBP15.42■□□□□ 0.06
CNOT1-220ENST00000569916 ERCC3P19447 782 aa15.42■□□□□ 0.06
CNOT1-220ENST00000569916 CHMLP26374 656 aa15.42■□□□□ 0.06
CNOT1-220ENST00000569916 GJA8P48165 433 aa15.42■□□□□ 0.06
CNOT1-220ENST00000569916 PLS1Q14651 629 aa15.42■□□□□ 0.06
CNOT1-220ENST00000569916 CCL14Q16627 93 aa15.42■□□□□ 0.06
CNOT1-220ENST00000569916 RRP12Q5JTH9 1297 aaKnown RBP15.42■□□□□ 0.06
CNOT1-220ENST00000569916 PPP4R3BQ5MIZ7 849 aa15.42■□□□□ 0.06
CNOT1-220ENST00000569916 AKNAD1Q5T1N1 836 aa15.42■□□□□ 0.06
CNOT1-220ENST00000569916 SLFN13Q68D06 897 aa15.42■□□□□ 0.06
CNOT1-220ENST00000569916 CENPQQ7L2Z9 268 aaPredicted RBP15.42■□□□□ 0.06
CNOT1-220ENST00000569916 NKX2-3Q8TAU0 364 aa15.42■□□□□ 0.06
CNOT1-220ENST00000569916 ZNF214Q9UL59 606 aaPredicted RBP15.42■□□□□ 0.06
CNOT1-220ENST00000569916 IVNS1ABPQ9Y6Y0 642 aa15.42■□□□□ 0.06
CNOT1-220ENST00000569916 NEDD4P46934 1319 aa15.42■□□□□ 0.06
CNOT1-220ENST00000569916 ZKSCAN1P17029 563 aaPredicted RBP15.41■□□□□ 0.06
CNOT1-220ENST00000569916 MAP3K21Q5TCX8 1036 aa15.41■□□□□ 0.06
CNOT1-220ENST00000569916 MFSD6Q6ZSS7 791 aa15.41■□□□□ 0.06
CNOT1-220ENST00000569916 TRMT44Q8IYL2 757 aaKnown RBP15.41■□□□□ 0.06
CNOT1-220ENST00000569916 MROH8Q9H579 483 aa15.41■□□□□ 0.06
CNOT1-220ENST00000569916 PAK6Q9NQU5 681 aaPredicted RBP15.41■□□□□ 0.06
CNOT1-220ENST00000569916 ZNF213O14771 459 aa15.4■□□□□ 0.06
CNOT1-220ENST00000569916 HOXC6P09630 235 aa15.4■□□□□ 0.06
CNOT1-220ENST00000569916 BMP3P12645 472 aa15.4■□□□□ 0.06
CNOT1-220ENST00000569916 RASGRP2Q7LDG7 609 aa15.4■□□□□ 0.06
CNOT1-220ENST00000569916 NCAPG2Q86XI2 1143 aa15.4■□□□□ 0.06
CNOT1-220ENST00000569916 RIOX2Q8IUF8 465 aa15.4■□□□□ 0.06
CNOT1-220ENST00000569916 PRPF38AQ8NAV1 312 aaKnown RBP15.4■□□□□ 0.06
CNOT1-220ENST00000569916 U2AF1L4Q8WU68 220 aaKnown RBP15.4■□□□□ 0.06
CNOT1-220ENST00000569916 GMCL1Q96IK5 515 aa15.4■□□□□ 0.06
CNOT1-220ENST00000569916 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.4■□□□□ 0.065e-7■■□□□ 13.8
CNOT1-220ENST00000569916 RNF41Q9H4P4 317 aaPredicted RBP15.4■□□□□ 0.06
CNOT1-220ENST00000569916 TCP11L1Q9NUJ3 509 aa15.4■□□□□ 0.06
CNOT1-220ENST00000569916 FEM1BQ9UK73 627 aa15.4■□□□□ 0.06
CNOT1-220ENST00000569916 STRNO43815 780 aa15.39■□□□□ 0.05
CNOT1-220ENST00000569916 SLC25A27O95847 323 aa15.39■□□□□ 0.05
CNOT1-220ENST00000569916 ADORA2AP29274 412 aa15.39■□□□□ 0.05
CNOT1-220ENST00000569916 SLC1A4P43007 532 aa15.39■□□□□ 0.05
CNOT1-220ENST00000569916 SKAP1Q86WV1 359 aa15.39■□□□□ 0.05
CNOT1-220ENST00000569916 NPLOC4Q8TAT6 608 aa15.39■□□□□ 0.05
CNOT1-220ENST00000569916 RUFY2Q8WXA3 655 aa15.39■□□□□ 0.05
CNOT1-220ENST00000569916 FLRT1Q9NZU1 646 aa15.39■□□□□ 0.05
CNOT1-220ENST00000569916 RPTORQ8N122 1335 aa15.39■□□□□ 0.05
CNOT1-220ENST00000569916 SGSM2O43147 1006 aa15.38■□□□□ 0.05
CNOT1-220ENST00000569916 SGPL1O95470 568 aa15.38■□□□□ 0.05
CNOT1-220ENST00000569916 PRKAR2AP13861 404 aaKnown RBP15.38■□□□□ 0.05
CNOT1-220ENST00000569916 MCCP23508 829 aa15.38■□□□□ 0.05
CNOT1-220ENST00000569916 STAT3P40763 770 aa15.38■□□□□ 0.05
CNOT1-220ENST00000569916 CACNB2Q08289 660 aaPredicted RBP15.38■□□□□ 0.05
CNOT1-220ENST00000569916 IMMTQ16891 758 aaKnown RBP15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms