RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 UBAP1Q9NZ09 502 aa12.13□□□□□ -0.47
CLK3-226ENST00000569406 MTMR6Q9Y217 621 aa12.13□□□□□ -0.47
CLK3-226ENST00000569406 SARM1Q6SZW1 724 aa12.13□□□□□ -0.47
CLK3-226ENST00000569406 OLFML1Q6UWY5 402 aa12.13□□□□□ -0.47
CLK3-226ENST00000569406 NECAB1Q8N987 351 aa12.13□□□□□ -0.47
CLK3-226ENST00000569406 TRIML1Q8N9V2 468 aa12.13□□□□□ -0.47
CLK3-226ENST00000569406 ALDH8A1Q9H2A2 487 aaPredicted RBP12.13□□□□□ -0.47
CLK3-226ENST00000569406 HAUS2Q9NVX0 235 aa12.13□□□□□ -0.47
CLK3-226ENST00000569406 EIF3HO15372 352 aaKnown RBP eCLIP12.12□□□□□ -0.47
CLK3-226ENST00000569406 CREB3O43889 395 aa12.12□□□□□ -0.47
CLK3-226ENST00000569406 SYF2O95926 243 aaKnown RBP12.12□□□□□ -0.47
CLK3-226ENST00000569406 ZKSCAN1P17029 563 aaPredicted RBP12.12□□□□□ -0.47
CLK3-226ENST00000569406 LRRC24Q50LG9 513 aa12.12□□□□□ -0.47
CLK3-226ENST00000569406 CCDC47Q96A33 483 aaKnown RBP12.12□□□□□ -0.47
CLK3-226ENST00000569406 SPEF2Q9C093 1822 aa12.12□□□□□ -0.47
CLK3-226ENST00000569406 B4DLN1 442 aa12.12□□□□□ -0.47
CLK3-226ENST00000569406 H3BQV1 296 aa12.12□□□□□ -0.47
CLK3-226ENST00000569406 IL2RBP14784 551 aa12.12□□□□□ -0.47
CLK3-226ENST00000569406 IFFO2Q5TF58 517 aa12.12□□□□□ -0.47
CLK3-226ENST00000569406 CCDC129Q6ZRS4 1044 aa12.12□□□□□ -0.47
CLK3-226ENST00000569406 TOM1L2Q6ZVM7 507 aa12.12□□□□□ -0.47
CLK3-226ENST00000569406 TRIM11Q96F44 468 aa12.12□□□□□ -0.47
CLK3-226ENST00000569406 ISCA1Q9BUE6 129 aa12.12□□□□□ -0.47
CLK3-226ENST00000569406 MYH15Q9Y2K3 1946 aa12.12□□□□□ -0.47
CLK3-226ENST00000569406 RFX7Q2KHR2 1363 aa12.12□□□□□ -0.47
CLK3-226ENST00000569406 NUP98P52948 1817 aa12.12□□□□□ -0.47
CLK3-226ENST00000569406 LRRC10BA6NIK2 292 aa12.12□□□□□ -0.47
CLK3-226ENST00000569406 POTEB2H3BUK9 544 aa12.12□□□□□ -0.47
CLK3-226ENST00000569406 TTC6Q86TZ1 520 aa12.12□□□□□ -0.47
CLK3-226ENST00000569406 RNF168Q8IYW5 571 aaPredicted RBP12.12□□□□□ -0.47
CLK3-226ENST00000569406 RASSF8Q8NHQ8 419 aa12.12□□□□□ -0.47
CLK3-226ENST00000569406 PARP1P09874 1014 aaKnown RBP12.11□□□□□ -0.47
CLK3-226ENST00000569406 CTCFP49711 727 aaPredicted RBP12.11□□□□□ -0.47
CLK3-226ENST00000569406 LARP1BQ659C4 914 aaKnown RBP12.11□□□□□ -0.47
CLK3-226ENST00000569406 STOX1Q6ZVD7 989 aa12.11□□□□□ -0.47
CLK3-226ENST00000569406 FUKQ8N0W3 1084 aa12.11□□□□□ -0.47
CLK3-226ENST00000569406 ZNF594Q96JF6 807 aaPredicted RBP12.11□□□□□ -0.47
CLK3-226ENST00000569406 CORO1CQ9ULV4 474 aaPredicted RBP12.11□□□□□ -0.47
CLK3-226ENST00000569406 RABL2BQ9UNT1 228 aa12.11□□□□□ -0.47
CLK3-226ENST00000569406 COL22A1Q8NFW1 1626 aaPredicted RBP12.11□□□□□ -0.47
CLK3-226ENST00000569406 MYH3P11055 1940 aa12.11□□□□□ -0.47
CLK3-226ENST00000569406 RUFY2Q8WXA3 655 aa12.11□□□□□ -0.47
CLK3-226ENST00000569406 GPATCH3Q96I76 525 aa12.11□□□□□ -0.47
CLK3-226ENST00000569406 PUS3Q9BZE2 481 aaKnown RBP12.11□□□□□ -0.47
CLK3-226ENST00000569406 ASAP1Q9ULH1 1129 aa12.11□□□□□ -0.47
CLK3-226ENST00000569406 PALLDQ8WX93 1383 aa12.11□□□□□ -0.47
CLK3-226ENST00000569406 OPLAHO14841 1288 aa12.1□□□□□ -0.47
CLK3-226ENST00000569406 CNGA1P29973 690 aa12.1□□□□□ -0.47
CLK3-226ENST00000569406 PPFIA1Q13136 1202 aa12.1□□□□□ -0.47
CLK3-226ENST00000569406 PPP1R15BQ5SWA1 713 aa12.1□□□□□ -0.47
CLK3-226ENST00000569406 SMARCC2Q8TAQ2 1214 aa12.1□□□□□ -0.47
CLK3-226ENST00000569406 PIGBQ92521 554 aa12.1□□□□□ -0.47
CLK3-226ENST00000569406 KAT6BQ8WYB5 2073 aa12.1□□□□□ -0.47
CLK3-226ENST00000569406 PRPF6O94906 941 aaKnown RBP12.1□□□□□ -0.47
CLK3-226ENST00000569406 LINGO3P0C6S8 592 aa12.1□□□□□ -0.47
CLK3-226ENST00000569406 MYBPC3Q14896 1274 aa12.1□□□□□ -0.47
CLK3-226ENST00000569406 KIF4BQ2VIQ3 1234 aa12.1□□□□□ -0.47
CLK3-226ENST00000569406 AOPEPQ8N6M6 819 aa12.1□□□□□ -0.47
CLK3-226ENST00000569406 DDX19AQ9NUU7 478 aaKnown RBP12.1□□□□□ -0.47
CLK3-226ENST00000569406 CYP21A2P08686 494 aa12.1□□□□□ -0.47
CLK3-226ENST00000569406 GJB2P29033 226 aa12.1□□□□□ -0.47
CLK3-226ENST00000569406 POLE2P56282 527 aa12.1□□□□□ -0.47
CLK3-226ENST00000569406 TIMM10P62072 90 aa12.1□□□□□ -0.47
CLK3-226ENST00000569406 KRT85P78386 507 aa12.1□□□□□ -0.47
CLK3-226ENST00000569406 AKAP17AQ02040 695 aaKnown RBP12.1□□□□□ -0.47
CLK3-226ENST00000569406 SYNE4Q8N205 404 aa12.1□□□□□ -0.47
CLK3-226ENST00000569406 WHAMMQ8TF30 809 aa12.1□□□□□ -0.47
CLK3-226ENST00000569406 ZBTB3Q9H5J0 574 aa12.1□□□□□ -0.47
CLK3-226ENST00000569406 COL4A1P02462 1669 aa12.1□□□□□ -0.47
CLK3-226ENST00000569406 MYH7P12883 1935 aa12.1□□□□□ -0.47
CLK3-226ENST00000569406 MBD4O95243 580 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 VCAM1P19320 739 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 RPS6KB1P23443 525 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 GGCXP38435 758 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 FOXD4Q12950 439 aaPredicted RBP12.09□□□□□ -0.47
CLK3-226ENST00000569406 SRGAP1Q7Z6B7 1085 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 CEP57L1Q8IYX8 460 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 DHRS1Q96LJ7 313 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 FSD1Q9BTV5 496 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 IFNKQ9P0W0 207 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 RIC1Q4ADV7 1423 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 SHOX2O60902 331 aaPredicted RBP12.09□□□□□ -0.47
CLK3-226ENST00000569406 E2F6O75461 281 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 NR1I2O75469 434 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 MXRA7P84157 204 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 KARSQ15046 597 aaKnown RBP12.09□□□□□ -0.47
CLK3-226ENST00000569406 OGFOD1Q8N543 542 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 UBE2OQ9C0C9 1292 aaKnown RBP12.09□□□□□ -0.47
CLK3-226ENST00000569406 OSBPL5Q9H0X9 879 aaPredicted RBP12.09□□□□□ -0.47
CLK3-226ENST00000569406 POLD4Q9HCU8 107 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 FRMD4BQ9Y2L6 1034 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 LRP5O75197 1615 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 DESP17661 470 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 ATP4AP20648 1035 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 GOLGA8FQ08AF8 430 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 GOLGA8DPQ0D2H9 430 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 PDCLQ13371 301 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 MTHFD1LQ6UB35 978 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 CCDC121Q6ZUS5 278 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 SMCR8Q8TEV9 937 aaPredicted RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms