RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 IPPQ9Y573 584 aa3.77□□□□□ -1.81
VPS35-209ENST00000568642 PXDNLA1KZ92 1463 aa3.77□□□□□ -1.81
VPS35-209ENST00000568642 TTC28Q96AY4 2481 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 ERVK-7P63135 1459 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 PLIN1O60240 522 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 ADCY3O60266 1144 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 RNASEH2AO75792 299 aaKnown RBP3.76□□□□□ -1.81
VPS35-209ENST00000568642 MICAL2O94851 1124 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 RASGRP1O95267 797 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 USP17L7P0C7H9 530 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 SPATA31C1P0DKV0 1188 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 EPB42P16452 691 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 TYRP1P17643 537 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 RRM1P23921 792 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 EIF4A3P38919 411 aaKnown RBP3.76□□□□□ -1.81
VPS35-209ENST00000568642 GIPRP48546 466 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 SARSP49591 514 aaKnown RBP3.76□□□□□ -1.81
VPS35-209ENST00000568642 DHX9Q08211 1270 aaKnown RBP3.76□□□□□ -1.81
VPS35-209ENST00000568642 POU4F2Q12837 409 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 TCEA2Q15560 299 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 CCDC96Q2M329 555 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 IL31Q6EBC2 164 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 MRM1Q6IN84 353 aaKnown RBP3.76□□□□□ -1.81
VPS35-209ENST00000568642 SLITRK4Q8IW52 837 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 GLIS3Q8NEA6 775 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 CXorf38Q8TB03 319 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 EDEM1Q92611 657 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 TIFAQ96CG3 184 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 MFSD3Q96ES6 412 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 STRBPQ96SI9 672 aaKnown RBP3.76□□□□□ -1.81
VPS35-209ENST00000568642 NELL2Q99435 816 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 CCDC8Q9H0W5 538 aaPredicted RBP3.76□□□□□ -1.81
VPS35-209ENST00000568642 RBSNQ9H1K0 784 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 CAAP1Q9H8G2 361 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 OBP2AQ9NY56 170 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 UBP1Q9NZI7 540 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 PGAP2Q9UHJ9 254 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 ZMYM5Q9UJ78 669 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 PLAAQ9Y263 795 aa3.76□□□□□ -1.81
VPS35-209ENST00000568642 SPAG9O60271 1321 aaKnown RBP3.75□□□□□ -1.81
VPS35-209ENST00000568642 GIPC1O14908 333 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 RFPL1O75677 317 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 RFPL3O75679 317 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 TCEA3O75764 348 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 FAM153BP0C7A2 387 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 MYCLP1P12525 358 aaPredicted RBP3.75□□□□□ -1.81
VPS35-209ENST00000568642 NEK3P51956 506 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 ZNF280AP59817 542 aaPredicted RBP3.75□□□□□ -1.81
VPS35-209ENST00000568642 NFKB2Q00653 900 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 USP4Q13107 963 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 PIN1Q13526 163 aaPredicted RBP3.75□□□□□ -1.81
VPS35-209ENST00000568642 COL9A2Q14055 689 aaPredicted RBP3.75□□□□□ -1.81
VPS35-209ENST00000568642 SEPT6Q14141 434 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 MLC1Q15049 377 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 SLC15A2Q16348 729 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 ALDH1L2Q3SY69 923 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 SH3PXD2AQ5TCZ1 1133 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 ZKSCAN2Q63HK3 967 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 PRPF40BQ6NWY9 871 aaKnown RBP3.75□□□□□ -1.81
VPS35-209ENST00000568642 KSR2Q6VAB6 950 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 TOGARAM2Q6ZUX3 1019 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 SYNPOQ8N3V7 929 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 CHAC2Q8WUX2 184 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 CCDC74AQ96AQ1 378 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 ANAPC16Q96DE5 110 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 ERP27Q96DN0 273 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 HOOK2Q96ED9 719 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 TMEM74Q96NL1 305 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 CLUHP3Q96NS8 147 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 NAP1L4Q99733 375 aaKnown RBP3.75□□□□□ -1.81
VPS35-209ENST00000568642 SARGQ9BW04 601 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 PLVAPQ9BX97 442 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 FAM8A1Q9UBU6 413 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 PPT2Q9UMR5 302 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 DAAM1Q9Y4D1 1078 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 C10orf71Q711Q0 1435 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 QSER1Q2KHR3 1735 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 TRPM2O94759 1503 aa3.75□□□□□ -1.81
VPS35-209ENST00000568642 TNKSO95271 1327 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 UPK3BL1B0FP48 263 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 UPK3BL2E5RIL1 263 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 hCG_1984214I3L0E3 225 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 FZD9O00144 591 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 IRS4O14654 1257 aaPredicted RBP3.74□□□□□ -1.81
VPS35-209ENST00000568642 APAF1O14727 1248 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 GABRDO14764 452 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 PDE8AO60658 829 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 GJB6O95452 261 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 VDRP11473 427 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 NOS1P29475 1434 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 HALP42357 657 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 TRAPPC10P48553 1259 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 GUCY2FP51841 1108 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 PURAQ00577 322 aaKnown RBP3.74□□□□□ -1.81
VPS35-209ENST00000568642 DNM1Q05193 864 aaKnown RBP3.74□□□□□ -1.81
VPS35-209ENST00000568642 APOBRQ0VD83 1088 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 UBAP2LQ14157 1087 aaKnown RBP3.74□□□□□ -1.81
VPS35-209ENST00000568642 MTFR1Q15390 333 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 TUBB8Q3ZCM7 444 aa3.74□□□□□ -1.81
VPS35-209ENST00000568642 TBCELQ5QJ74 424 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms