RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 IFIT3O14879 490 aaKnown RBP25.78■■□□□ 1.72
CLN3-234ENST00000568472 KIF22Q14807 665 aa25.78■■□□□ 1.72
CLN3-234ENST00000568472 IFIT1BQ5T764 474 aaKnown RBP25.78■■□□□ 1.72
CLN3-234ENST00000568472 RASEFQ8IZ41 740 aa25.78■■□□□ 1.72
CLN3-234ENST00000568472 TMTC2Q8N394 836 aa25.78■■□□□ 1.72
CLN3-234ENST00000568472 TMEM87BQ96K49 555 aa25.78■■□□□ 1.72
CLN3-234ENST00000568472 MORF4L1Q9UBU8 362 aa25.78■■□□□ 1.72
CLN3-234ENST00000568472 RABGAP1Q9Y3P9 1069 aa25.78■■□□□ 1.72
CLN3-234ENST00000568472 PLA2G6O60733 806 aa25.77■■□□□ 1.72
CLN3-234ENST00000568472 DSG3P32926 999 aa25.77■■□□□ 1.72
CLN3-234ENST00000568472 SEC23AQ15436 765 aa25.77■■□□□ 1.72
CLN3-234ENST00000568472 PRPF38AQ8NAV1 312 aaKnown RBP25.77■■□□□ 1.72
CLN3-234ENST00000568472 CHURC1Q8WUH1 139 aa25.77■■□□□ 1.72
CLN3-234ENST00000568472 WDR19Q8NEZ3 1342 aa25.77■■□□□ 1.72
CLN3-234ENST00000568472 PSMA5P28066 241 aa25.76■■□□□ 1.71
CLN3-234ENST00000568472 ANKRD13CQ8N6S4 541 aa25.76■■□□□ 1.71
CLN3-234ENST00000568472 PNMA1Q8ND90 353 aa25.76■■□□□ 1.71
CLN3-234ENST00000568472 GPRC5AQ8NFJ5 357 aa25.76■■□□□ 1.71
CLN3-234ENST00000568472 SPDYE16A6NNV3 312 aaPredicted RBP25.75■■□□□ 1.71
CLN3-234ENST00000568472 PRC1O43663 620 aa25.75■■□□□ 1.71
CLN3-234ENST00000568472 FDX1P10109 184 aa25.75■■□□□ 1.71
CLN3-234ENST00000568472 LACTBP83111 547 aaPredicted RBP25.75■■□□□ 1.71
CLN3-234ENST00000568472 WTAPQ15007 396 aa25.75■■□□□ 1.71
CLN3-234ENST00000568472 TMEM67Q5HYA8 995 aa25.75■■□□□ 1.71
CLN3-234ENST00000568472 DHX32Q7L7V1 743 aaKnown RBP25.75■■□□□ 1.71
CLN3-234ENST00000568472 FAM160B2Q86V87 743 aa25.75■■□□□ 1.71
CLN3-234ENST00000568472 NUP88Q99567 741 aaPredicted RBP25.75■■□□□ 1.71
CLN3-234ENST00000568472 SLF1Q9BQI6 1058 aa25.75■■□□□ 1.71
CLN3-234ENST00000568472 RBPJLQ9UBG7 517 aa25.75■■□□□ 1.71
CLN3-234ENST00000568472 PPP1R9AQ9ULJ8 1098 aa25.75■■□□□ 1.71
CLN3-234ENST00000568472 ADAMTS5Q9UNA0 930 aa25.75■■□□□ 1.71
CLN3-234ENST00000568472 SNX14Q9Y5W7 946 aa25.75■■□□□ 1.71
CLN3-234ENST00000568472 GNRH1P01148 92 aa25.74■■□□□ 1.71
CLN3-234ENST00000568472 STAT2P52630 851 aa25.74■■□□□ 1.71
CLN3-234ENST00000568472 ANTXR2P58335 489 aa25.74■■□□□ 1.71
CLN3-234ENST00000568472 IGDCC4Q8TDY8 1250 aa25.74■■□□□ 1.71
CLN3-234ENST00000568472 SNHG28P0DPA3 235 aa25.73■■□□□ 1.71
CLN3-234ENST00000568472 PDHBP11177 359 aa25.73■■□□□ 1.71
CLN3-234ENST00000568472 LIFRP42702 1097 aa25.73■■□□□ 1.71
CLN3-234ENST00000568472 CCNA1P78396 465 aa25.73■■□□□ 1.71
CLN3-234ENST00000568472 GPATCH4Q5T3I0 446 aaKnown RBP25.73■■□□□ 1.71
CLN3-234ENST00000568472 TMEM232C9JQI7 657 aa25.72■■□□□ 1.71
CLN3-234ENST00000568472 ERVK-9P63128 1117 aa25.72■■□□□ 1.71
CLN3-234ENST00000568472 ERVK-24P63145 666 aa25.72■■□□□ 1.71
CLN3-234ENST00000568472 C8orf34Q49A92 452 aa25.72■■□□□ 1.71
CLN3-234ENST00000568472 CHST3Q7LGC8 479 aa25.72■■□□□ 1.71
CLN3-234ENST00000568472 FBXO28Q9NVF7 368 aa25.72■■□□□ 1.71
CLN3-234ENST00000568472 ISY1Q9ULR0 285 aaKnown RBP25.72■■□□□ 1.71
CLN3-234ENST00000568472 MYH4Q9Y623 1939 aa25.72■■□□□ 1.71
CLN3-234ENST00000568472 ANAPC15P60006 121 aa25.71■■□□□ 1.71
CLN3-234ENST00000568472 EXOSC10Q01780 885 aaKnown RBP25.71■■□□□ 1.71
CLN3-234ENST00000568472 IKQ13123 557 aaPredicted RBP25.71■■□□□ 1.71
CLN3-234ENST00000568472 CCDC96Q2M329 555 aa25.71■■□□□ 1.71
CLN3-234ENST00000568472 ADCK5Q3MIX3 580 aa25.71■■□□□ 1.71
CLN3-234ENST00000568472 CD99L2Q8TCZ2 262 aa25.71■■□□□ 1.71
CLN3-234ENST00000568472 ATG4CQ96DT6 458 aa25.71■■□□□ 1.71
CLN3-234ENST00000568472 PAGR1Q9BTK6 254 aa25.71■■□□□ 1.71
CLN3-234ENST00000568472 TXNRD2Q9NNW7 524 aa25.71■■□□□ 1.71
CLN3-234ENST00000568472 VWA5AO00534 786 aa25.7■■□□□ 1.7
CLN3-234ENST00000568472 ZBED4O75132 1171 aa25.7■■□□□ 1.7
CLN3-234ENST00000568472 HOXD10P28358 340 aa25.7■■□□□ 1.7
CLN3-234ENST00000568472 FCGRTP55899 365 aa25.7■■□□□ 1.7
CLN3-234ENST00000568472 ZNF543Q08ER8 600 aa25.7■■□□□ 1.7
CLN3-234ENST00000568472 PKN2Q16513 984 aaKnown RBP25.7■■□□□ 1.7
CLN3-234ENST00000568472 ASPRV1Q53RT3 343 aa25.7■■□□□ 1.7
CLN3-234ENST00000568472 BLOC1S2Q6QNY1 142 aa25.7■■□□□ 1.7
CLN3-234ENST00000568472 BTNL9Q6UXG8 535 aa25.7■■□□□ 1.7
CLN3-234ENST00000568472 KCTD1Q719H9 257 aa25.7■■□□□ 1.7
CLN3-234ENST00000568472 CTU1Q7Z7A3 348 aaKnown RBP25.7■■□□□ 1.7
CLN3-234ENST00000568472 CATIPQ7Z7H3 387 aa25.7■■□□□ 1.7
CLN3-234ENST00000568472 JAKMIP1Q96N16 626 aaKnown RBP25.7■■□□□ 1.7
CLN3-234ENST00000568472 TM6SF1Q9BZW5 370 aa25.7■■□□□ 1.7
CLN3-234ENST00000568472 EFCC1Q9HA90 598 aa25.7■■□□□ 1.7
CLN3-234ENST00000568472 MTMR7Q9Y216 660 aa25.7■■□□□ 1.7
CLN3-234ENST00000568472 SH2B2O14492 632 aaPredicted RBP25.69■■□□□ 1.7
CLN3-234ENST00000568472 MAPK4P31152 587 aa25.69■■□□□ 1.7
CLN3-234ENST00000568472 PSMC4P43686 418 aa25.69■■□□□ 1.7
CLN3-234ENST00000568472 POTEEQ6S8J3 1075 aa25.69■■□□□ 1.7
CLN3-234ENST00000568472 CCAR1Q8IX12 1150 aaKnown RBP25.69■■□□□ 1.7
CLN3-234ENST00000568472 KIFC2Q96AC6 838 aa25.69■■□□□ 1.7
CLN3-234ENST00000568472 MAP3K14Q99558 947 aa25.69■■□□□ 1.7
CLN3-234ENST00000568472 LY9Q9HBG7 655 aa25.69■■□□□ 1.7
CLN3-234ENST00000568472 CTDP1Q9Y5B0 961 aaPredicted RBP25.69■■□□□ 1.7
CLN3-234ENST00000568472 CNMDO75829 334 aa25.68■■□□□ 1.7
CLN3-234ENST00000568472 FMNL1O95466 1100 aaPredicted RBP25.68■■□□□ 1.7
CLN3-234ENST00000568472 PRMT2P55345 433 aa25.68■■□□□ 1.7
CLN3-234ENST00000568472 SAMD1Q6SPF0 538 aaPredicted RBP25.68■■□□□ 1.7
CLN3-234ENST00000568472 BTBD7Q9P203 1132 aa25.68■■□□□ 1.7
CLN3-234ENST00000568472 CCDC69A6NI79 296 aa25.67■■□□□ 1.7
CLN3-234ENST00000568472 ATP2A1O14983 1001 aa25.67■■□□□ 1.7
CLN3-234ENST00000568472 PARP1P09874 1014 aaKnown RBP25.67■■□□□ 1.7
CLN3-234ENST00000568472 COPB2P35606 906 aa25.67■■□□□ 1.7
CLN3-234ENST00000568472 OAZ1P54368 228 aa25.67■■□□□ 1.7
CLN3-234ENST00000568472 Q3C1V9 767 aa25.67■■□□□ 1.7
CLN3-234ENST00000568472 NFXL1Q6ZNB6 911 aa25.67■■□□□ 1.7
CLN3-234ENST00000568472 SGMS1Q86VZ5 419 aa25.67■■□□□ 1.7
CLN3-234ENST00000568472 SPATC1LQ9H0A9 340 aa25.67■■□□□ 1.7
CLN3-234ENST00000568472 SLC38A10Q9HBR0 1119 aa25.67■■□□□ 1.7
CLN3-234ENST00000568472 SLC25A27O95847 323 aa25.66■■□□□ 1.7
CLN3-234ENST00000568472 CALM1P0DP23 149 aa25.66■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms