RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 FAM83BQ5T0W9 1011 aa17.83■□□□□ 0.44
VPS39-210ENST00000568357 GPR142Q7Z601 462 aa17.83■□□□□ 0.44
VPS39-210ENST00000568357 CCAR1Q8IX12 1150 aaKnown RBP17.83■□□□□ 0.44
VPS39-210ENST00000568357 ATG4CQ96DT6 458 aa17.83■□□□□ 0.44
VPS39-210ENST00000568357 LRCH3Q96II8 777 aa17.83■□□□□ 0.44
VPS39-210ENST00000568357 BIN2Q9UBW5 565 aaPredicted RBP17.83■□□□□ 0.44
VPS39-210ENST00000568357 ADAMTS5Q9UNA0 930 aa17.83■□□□□ 0.44
VPS39-210ENST00000568357 RANBP6O60518 1105 aaKnown RBP17.82■□□□□ 0.44
VPS39-210ENST00000568357 CYP2B6P20813 491 aa17.82■□□□□ 0.44
VPS39-210ENST00000568357 CCNA1P78396 465 aa17.82■□□□□ 0.44
VPS39-210ENST00000568357 MORN1Q5T089 497 aa17.82■□□□□ 0.44
VPS39-210ENST00000568357 SAMD1Q6SPF0 538 aaPredicted RBP17.82■□□□□ 0.44
VPS39-210ENST00000568357 PLEKHH3Q7Z736 793 aa17.82■□□□□ 0.44
VPS39-210ENST00000568357 SKAP1Q86WV1 359 aa17.82■□□□□ 0.44
VPS39-210ENST00000568357 LRRC47Q8N1G4 583 aaKnown RBP17.82■□□□□ 0.44
VPS39-210ENST00000568357 NKX2-3Q8TAU0 364 aa17.82■□□□□ 0.44
VPS39-210ENST00000568357 USP6NLQ92738 828 aa17.82■□□□□ 0.44
VPS39-210ENST00000568357 LAMA3Q16787 3333 aa17.82■□□□□ 0.44
VPS39-210ENST00000568357 CUL9Q8IWT3 2517 aa17.81■□□□□ 0.44
VPS39-210ENST00000568357 GREB1LQ9C091 1923 aaPredicted RBP17.81■□□□□ 0.44
VPS39-210ENST00000568357 TSPY2A6NKD2 308 aa17.81■□□□□ 0.44
VPS39-210ENST00000568357 CCL5P13501 91 aa17.81■□□□□ 0.44
VPS39-210ENST00000568357 TBC1D10CQ8IV04 446 aa17.81■□□□□ 0.44
VPS39-210ENST00000568357 NUDT12Q9BQG2 462 aa17.81■□□□□ 0.44
VPS39-210ENST00000568357 MOV10L1Q9BXT6 1211 aaKnown RBP17.81■□□□□ 0.44
VPS39-210ENST00000568357 MGAMO43451 1857 aa17.81■□□□□ 0.44
VPS39-210ENST00000568357 MYH8P13535 1937 aa17.8■□□□□ 0.44
VPS39-210ENST00000568357 INHAP05111 366 aa17.8■□□□□ 0.44
VPS39-210ENST00000568357 CHMLP26374 656 aa17.8■□□□□ 0.44
VPS39-210ENST00000568357 MNX1P50219 401 aaPredicted RBP17.8■□□□□ 0.44
VPS39-210ENST00000568357 UBXN2AP68543 259 aa17.8■□□□□ 0.44
VPS39-210ENST00000568357 TMEM132BQ14DG7 1078 aa17.8■□□□□ 0.44
VPS39-210ENST00000568357 RRP12Q5JTH9 1297 aaKnown RBP17.8■□□□□ 0.44
VPS39-210ENST00000568357 AKNAD1Q5T1N1 836 aa17.8■□□□□ 0.44
VPS39-210ENST00000568357 WDR78Q5VTH9 848 aa17.8■□□□□ 0.44
VPS39-210ENST00000568357 CENPQQ7L2Z9 268 aaPredicted RBP17.8■□□□□ 0.44
VPS39-210ENST00000568357 UBE2Q1Q7Z7E8 422 aa17.8■□□□□ 0.44
VPS39-210ENST00000568357 MB21D1Q8N884 522 aa17.8■□□□□ 0.44
VPS39-210ENST00000568357 SPATC1LQ9H0A9 340 aa17.8■□□□□ 0.44
VPS39-210ENST00000568357 UNC93B1Q9H1C4 597 aa17.8■□□□□ 0.44
VPS39-210ENST00000568357 TOMM22Q9NS69 142 aa17.8■□□□□ 0.44
VPS39-210ENST00000568357 PPP1R9AQ9ULJ8 1098 aa17.8■□□□□ 0.44
VPS39-210ENST00000568357 SYNPO2Q9UMS6 1093 aa17.8■□□□□ 0.44
VPS39-210ENST00000568357 ALPK3Q96L96 1907 aa17.79■□□□□ 0.44
VPS39-210ENST00000568357 VWA5AO00534 786 aa17.79■□□□□ 0.44
VPS39-210ENST00000568357 ZNF213O14771 459 aa17.79■□□□□ 0.44
VPS39-210ENST00000568357 PTPREP23469 700 aa17.79■□□□□ 0.44
VPS39-210ENST00000568357 NOVP48745 357 aa17.79■□□□□ 0.44
VPS39-210ENST00000568357 TRIM32Q13049 653 aa17.79■□□□□ 0.44
VPS39-210ENST00000568357 PLS1Q14651 629 aa17.79■□□□□ 0.44
VPS39-210ENST00000568357 SLFN13Q68D06 897 aa17.79■□□□□ 0.44
VPS39-210ENST00000568357 MFSD6Q6ZSS7 791 aa17.79■□□□□ 0.44
VPS39-210ENST00000568357 GMCL1P1Q8NEA9 526 aa17.79■□□□□ 0.44
VPS39-210ENST00000568357 SOCS4Q8WXH5 440 aa17.79■□□□□ 0.44
VPS39-210ENST00000568357 DSCC1Q9BVC3 393 aa17.79■□□□□ 0.44
VPS39-210ENST00000568357 RNF208Q9H0X6 261 aa17.79■□□□□ 0.44
VPS39-210ENST00000568357 STX8Q9UNK0 236 aa17.79■□□□□ 0.44
VPS39-210ENST00000568357 XRCC5P13010 732 aaKnown RBP17.78■□□□□ 0.44
VPS39-210ENST00000568357 ERCC3P19447 782 aa17.78■□□□□ 0.44
VPS39-210ENST00000568357 STAG1Q8WVM7 1258 aa17.78■□□□□ 0.44
VPS39-210ENST00000568357 TRIB2Q92519 343 aa17.78■□□□□ 0.44
VPS39-210ENST00000568357 CHMP4CQ96CF2 233 aa17.78■□□□□ 0.44
VPS39-210ENST00000568357 SLF1Q9BQI6 1058 aa17.78■□□□□ 0.44
VPS39-210ENST00000568357 CWC22Q9HCG8 908 aaKnown RBP17.78■□□□□ 0.44
VPS39-210ENST00000568357 RLFQ13129 1914 aa17.77■□□□□ 0.44
VPS39-210ENST00000568357 SLC15A5A6NIM6 579 aa17.77■□□□□ 0.44
VPS39-210ENST00000568357 RGS2P41220 211 aa17.77■□□□□ 0.44
VPS39-210ENST00000568357 MAP2K5Q13163 448 aa17.77■□□□□ 0.44
VPS39-210ENST00000568357 CCL14Q16627 93 aa17.77■□□□□ 0.44
VPS39-210ENST00000568357 SHCBP1Q8NEM2 672 aa17.77■□□□□ 0.44
VPS39-210ENST00000568357 REPS2Q8NFH8 660 aa17.77■□□□□ 0.44
VPS39-210ENST00000568357 HTATIP2Q9BUP3 242 aa17.77■□□□□ 0.44
VPS39-210ENST00000568357 TCP11L1Q9NUJ3 509 aa17.77■□□□□ 0.44
VPS39-210ENST00000568357 DOCK3Q8IZD9 2030 aa17.77■□□□□ 0.43
VPS39-210ENST00000568357 A0A0C4DFX4 3053 aa17.77■□□□□ 0.43
VPS39-210ENST00000568357 NEDD4P46934 1319 aa17.76■□□□□ 0.43
VPS39-210ENST00000568357 HMGCRP04035 888 aa17.76■□□□□ 0.43
VPS39-210ENST00000568357 GJB1P08034 283 aa17.76■□□□□ 0.43
VPS39-210ENST00000568357 PCP11498 1178 aaKnown RBP17.76■□□□□ 0.43
VPS39-210ENST00000568357 BMP3P12645 472 aa17.76■□□□□ 0.43
VPS39-210ENST00000568357 MCCP23508 829 aa17.76■□□□□ 0.43
VPS39-210ENST00000568357 GRB14Q14449 540 aa17.76■□□□□ 0.43
VPS39-210ENST00000568357 PPP4R3BQ5MIZ7 849 aa17.76■□□□□ 0.43
VPS39-210ENST00000568357 PRPF38AQ8NAV1 312 aaKnown RBP17.76■□□□□ 0.43
VPS39-210ENST00000568357 A0A1W2PPC1 479 aa17.75■□□□□ 0.43
VPS39-210ENST00000568357 STAT3P40763 770 aa17.75■□□□□ 0.43
VPS39-210ENST00000568357 GJA8P48165 433 aa17.75■□□□□ 0.43
VPS39-210ENST00000568357 PTH1RQ03431 593 aa17.75■□□□□ 0.43
VPS39-210ENST00000568357 RASGRP2Q7LDG7 609 aa17.75■□□□□ 0.43
VPS39-210ENST00000568357 NCAPG2Q86XI2 1143 aa17.75■□□□□ 0.43
VPS39-210ENST00000568357 RIOX2Q8IUF8 465 aa17.75■□□□□ 0.43
VPS39-210ENST00000568357 RUFY2Q8WXA3 655 aa17.75■□□□□ 0.43
VPS39-210ENST00000568357 KIFC2Q96AC6 838 aa17.75■□□□□ 0.43
VPS39-210ENST00000568357 GMCL1Q96IK5 515 aa17.75■□□□□ 0.43
VPS39-210ENST00000568357 TMEM47Q9BQJ4 181 aa17.75■□□□□ 0.43
VPS39-210ENST00000568357 RNF41Q9H4P4 317 aaPredicted RBP17.75■□□□□ 0.43
VPS39-210ENST00000568357 MROH8Q9H579 483 aa17.75■□□□□ 0.43
VPS39-210ENST00000568357 FLRT1Q9NZU1 646 aa17.75■□□□□ 0.43
VPS39-210ENST00000568357 CTNNA3Q9UI47 895 aa17.75■□□□□ 0.43
VPS39-210ENST00000568357 FEM1BQ9UK73 627 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms