RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 ZYXQ15942 572 aaKnown RBP13.62□□□□□ -0.23
CLN3-226ENST00000567160 METTL16Q86W50 562 aaKnown RBP13.62□□□□□ -0.23
CLN3-226ENST00000567160 SH3RF3Q8TEJ3 882 aaPredicted RBP13.62□□□□□ -0.23
CLN3-226ENST00000567160 SNRKQ9NRH2 765 aa13.62□□□□□ -0.23
CLN3-226ENST00000567160 CXXC1Q9P0U4 656 aaPredicted RBP13.62□□□□□ -0.23
CLN3-226ENST00000567160 TTC41PQ6P2S7 1318 aa13.62□□□□□ -0.23
CLN3-226ENST00000567160 DCDC2CA8MYV0 355 aa13.61□□□□□ -0.23
CLN3-226ENST00000567160 ARID4AP29374 1257 aaPredicted RBP13.61□□□□□ -0.23
CLN3-226ENST00000567160 PPIGQ13427 754 aaKnown RBP eCLIP13.61□□□□□ -0.23
CLN3-226ENST00000567160 RAB30Q15771 203 aa13.61□□□□□ -0.23
CLN3-226ENST00000567160 FAM47AQ5JRC9 791 aa13.61□□□□□ -0.23
CLN3-226ENST00000567160 SLC44A5Q8NCS7 719 aa13.61□□□□□ -0.23
CLN3-226ENST00000567160 TOX2Q96NM4 488 aa13.61□□□□□ -0.23
CLN3-226ENST00000567160 PBX4Q9BYU1 374 aa13.61□□□□□ -0.23
CLN3-226ENST00000567160 BOLA2Q9H3K6 86 aa13.61□□□□□ -0.23
CLN3-226ENST00000567160 DNAJC18Q9H819 358 aa13.61□□□□□ -0.23
CLN3-226ENST00000567160 XPNPEP3Q9NQH7 507 aa13.61□□□□□ -0.23
CLN3-226ENST00000567160 BTBD7Q9P203 1132 aa13.61□□□□□ -0.23
CLN3-226ENST00000567160 MSRAQ9UJ68 235 aa13.61□□□□□ -0.23
CLN3-226ENST00000567160 FOCADQ5VW36 1801 aa13.61□□□□□ -0.23
CLN3-226ENST00000567160 ERC2O15083 957 aa13.6□□□□□ -0.23
CLN3-226ENST00000567160 TIMP1P01033 207 aa13.6□□□□□ -0.23
CLN3-226ENST00000567160 ATP5JP18859 108 aa13.6□□□□□ -0.23
CLN3-226ENST00000567160 VCAM1P19320 739 aa13.6□□□□□ -0.23
CLN3-226ENST00000567160 MCAMP43121 646 aa13.6□□□□□ -0.23
CLN3-226ENST00000567160 TMEM31Q5JXX7 168 aa13.6□□□□□ -0.23
CLN3-226ENST00000567160 PI16Q6UXB8 463 aa13.6□□□□□ -0.23
CLN3-226ENST00000567160 ANKRD33Q7Z3H0 272 aa13.6□□□□□ -0.23
CLN3-226ENST00000567160 SPATA5Q8NB90 893 aa13.6□□□□□ -0.23
CLN3-226ENST00000567160 PI4K2BQ8TCG2 481 aa13.6□□□□□ -0.23
CLN3-226ENST00000567160 CDK5RAP2Q96SN8 1893 aa13.6□□□□□ -0.23
CLN3-226ENST00000567160 DNAJC2Q99543 621 aaKnown RBP13.6□□□□□ -0.23
CLN3-226ENST00000567160 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.6□□□□□ -0.23
CLN3-226ENST00000567160 LRFN3Q9BTN0 628 aa13.6□□□□□ -0.23
CLN3-226ENST00000567160 LRP2BPQ9P2M1 347 aa13.6□□□□□ -0.23
CLN3-226ENST00000567160 NRBP1Q9UHY1 535 aa13.6□□□□□ -0.23
CLN3-226ENST00000567160 SMCHD1A6NHR9 2005 aa13.59□□□□□ -0.23
CLN3-226ENST00000567160 A0A1W2PQ45 241 aaPredicted RBP13.59□□□□□ -0.23
CLN3-226ENST00000567160 A0A1W2PQY0 241 aa13.59□□□□□ -0.23
CLN3-226ENST00000567160 SPDYE16A6NNV3 312 aaPredicted RBP13.59□□□□□ -0.23
CLN3-226ENST00000567160 GH2P01242 217 aa13.59□□□□□ -0.23
CLN3-226ENST00000567160 PBX2P40425 430 aa13.59□□□□□ -0.23
CLN3-226ENST00000567160 ADGRE1Q14246 886 aa13.59□□□□□ -0.23
CLN3-226ENST00000567160 SHROOM1Q2M3G4 852 aaPredicted RBP13.59□□□□□ -0.23
CLN3-226ENST00000567160 MAPKAPK5Q8IW41 473 aa13.59□□□□□ -0.23
CLN3-226ENST00000567160 SHCBP1Q8NEM2 672 aa13.59□□□□□ -0.23
CLN3-226ENST00000567160 TGFBRAP1Q8WUH2 860 aa13.59□□□□□ -0.23
CLN3-226ENST00000567160 NUP133Q8WUM0 1156 aa13.59□□□□□ -0.23
CLN3-226ENST00000567160 ZNF512BQ96KM6 892 aaPredicted RBP13.59□□□□□ -0.23
CLN3-226ENST00000567160 NECAB3Q96P71 396 aaPredicted RBP13.59□□□□□ -0.23
CLN3-226ENST00000567160 KIAA1683Q9H0B3 1180 aa13.59□□□□□ -0.23
CLN3-226ENST00000567160 OSBPL3Q9H4L5 887 aa13.59□□□□□ -0.23
CLN3-226ENST00000567160 HMG20BQ9P0W2 317 aa13.59□□□□□ -0.23
CLN3-226ENST00000567160 FLT1P17948 1338 aa13.59□□□□□ -0.23
CLN3-226ENST00000567160 BMP1P13497 986 aa13.58□□□□□ -0.24
CLN3-226ENST00000567160 ZAP70P43403 619 aa13.58□□□□□ -0.24
CLN3-226ENST00000567160 FAAP100Q0VG06 881 aa13.58□□□□□ -0.24
CLN3-226ENST00000567160 TTC22Q5TAA0 569 aa13.58□□□□□ -0.24
CLN3-226ENST00000567160 MFSD5Q6N075 450 aa13.58□□□□□ -0.24
CLN3-226ENST00000567160 PSRC1Q6PGN9 363 aaPredicted RBP13.58□□□□□ -0.24
CLN3-226ENST00000567160 TBC1D9Q6ZT07 1266 aa13.58□□□□□ -0.24
CLN3-226ENST00000567160 ABRAQ8N0Z2 381 aa13.58□□□□□ -0.24
CLN3-226ENST00000567160 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.58□□□□□ -0.24
CLN3-226ENST00000567160 MOV10L1Q9BXT6 1211 aaKnown RBP13.58□□□□□ -0.24
CLN3-226ENST00000567160 MTIF3Q9H2K0 278 aaKnown RBP13.58□□□□□ -0.24
CLN3-226ENST00000567160 RPAP3Q9H6T3 665 aaPredicted RBP13.58□□□□□ -0.24
CLN3-226ENST00000567160 SLC28A3Q9HAS3 691 aa13.58□□□□□ -0.24
CLN3-226ENST00000567160 AATFQ9NY61 560 aaKnown RBP eCLIP13.58□□□□□ -0.24
CLN3-226ENST00000567160 HOXC10Q9NYD6 342 aa13.58□□□□□ -0.24
CLN3-226ENST00000567160 PALD1Q9ULE6 856 aa13.58□□□□□ -0.24
CLN3-226ENST00000567160 MROH7Q68CQ1 1323 aa13.58□□□□□ -0.24
CLN3-226ENST00000567160 MUC6Q6W4X9 2439 aa13.58□□□□□ -0.24
CLN3-226ENST00000567160 GRXCR1A8MXD5 290 aa13.57□□□□□ -0.24
CLN3-226ENST00000567160 GOLIM4O00461 696 aa13.57□□□□□ -0.24
CLN3-226ENST00000567160 RAB3GAP1Q15042 981 aa13.57□□□□□ -0.24
CLN3-226ENST00000567160 TMEM240Q5SV17 173 aa13.57□□□□□ -0.24
CLN3-226ENST00000567160 PRAMEF19Q5SWL8 479 aa13.57□□□□□ -0.24
CLN3-226ENST00000567160 NAA16Q6N069 864 aaPredicted RBP13.57□□□□□ -0.24
CLN3-226ENST00000567160 TMEM199Q8N511 208 aa13.57□□□□□ -0.24
CLN3-226ENST00000567160 HAUS7Q99871 368 aa13.57□□□□□ -0.24
CLN3-226ENST00000567160 TSEN34Q9BSV6 310 aaKnown RBP13.57□□□□□ -0.24
CLN3-226ENST00000567160 SPATC1LQ9H0A9 340 aa13.57□□□□□ -0.24
CLN3-226ENST00000567160 MROH8Q9H579 483 aa13.57□□□□□ -0.24
CLN3-226ENST00000567160 STARD7Q9NQZ5 370 aa13.57□□□□□ -0.24
CLN3-226ENST00000567160 COBLO75128 1261 aa13.56□□□□□ -0.24
CLN3-226ENST00000567160 PGK1P00558 417 aa13.56□□□□□ -0.24
CLN3-226ENST00000567160 ERCC3P19447 782 aa13.56□□□□□ -0.24
CLN3-226ENST00000567160 PPP4CP60510 307 aa13.56□□□□□ -0.24
CLN3-226ENST00000567160 COG2Q14746 738 aa13.56□□□□□ -0.24
CLN3-226ENST00000567160 RASIP1Q5U651 963 aa13.56□□□□□ -0.24
CLN3-226ENST00000567160 MB21D1Q8N884 522 aa13.56□□□□□ -0.24
CLN3-226ENST00000567160 HERVK_113Q902F9 699 aa13.56□□□□□ -0.24
CLN3-226ENST00000567160 MAML3Q96JK9 1138 aa13.56□□□□□ -0.24
CLN3-226ENST00000567160 ANTXR1Q9H6X2 564 aa13.56□□□□□ -0.24
CLN3-226ENST00000567160 CABP5Q9NP86 173 aa13.56□□□□□ -0.24
CLN3-226ENST00000567160 PAG1Q9NWQ8 432 aa13.56□□□□□ -0.24
CLN3-226ENST00000567160 MYH1P12882 1939 aa13.56□□□□□ -0.24
CLN3-226ENST00000567160 ZNFX1Q9P2E3 1918 aaKnown RBP13.56□□□□□ -0.24
CLN3-226ENST00000567160 ROBO3Q96MS0 1386 aa13.56□□□□□ -0.24
CLN3-226ENST00000567160 CHD9Q3L8U1 2897 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms