RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 RAB30Q15771 203 aa20.5■□□□□ 0.87
CDH3-205ENST00000566808 TMEM240Q5SV17 173 aa20.5■□□□□ 0.87
CDH3-205ENST00000566808 ZNF512BQ96KM6 892 aaPredicted RBP20.5■□□□□ 0.87
CDH3-205ENST00000566808 GPR108Q9NPR9 543 aa20.5■□□□□ 0.87
CDH3-205ENST00000566808 PIH1D3Q9NQM4 214 aaKnown RBP20.5■□□□□ 0.87
CDH3-205ENST00000566808 MOXD2PA6NHM9 499 aa20.49■□□□□ 0.87
CDH3-205ENST00000566808 DSG3P32926 999 aa20.49■□□□□ 0.87
CDH3-205ENST00000566808 SLFN5Q08AF3 891 aa20.49■□□□□ 0.87
CDH3-205ENST00000566808 CCDC85BQ15834 202 aaPredicted RBP20.49■□□□□ 0.87
CDH3-205ENST00000566808 MIGA1Q8NAN2 632 aa20.49■□□□□ 0.87
CDH3-205ENST00000566808 DBNDD2Q9BQY9 259 aa20.49■□□□□ 0.87
CDH3-205ENST00000566808 TINF2Q9BSI4 451 aa20.49■□□□□ 0.87
CDH3-205ENST00000566808 TSPYL2Q9H2G4 693 aaPredicted RBP20.49■□□□□ 0.87
CDH3-205ENST00000566808 CXXC1Q9P0U4 656 aaPredicted RBP20.49■□□□□ 0.87
CDH3-205ENST00000566808 HCN4Q9Y3Q4 1203 aa20.49■□□□□ 0.87
CDH3-205ENST00000566808 SYNRGQ9UMZ2 1314 aa20.49■□□□□ 0.87
CDH3-205ENST00000566808 A0A1W2PRG0 241 aa20.48■□□□□ 0.87
CDH3-205ENST00000566808 GRXCR1A8MXD5 290 aa20.48■□□□□ 0.87
CDH3-205ENST00000566808 FLOT1O75955 427 aa20.48■□□□□ 0.87
CDH3-205ENST00000566808 SLC25A27O95847 323 aa20.48■□□□□ 0.87
CDH3-205ENST00000566808 IGFBP4P22692 258 aa20.48■□□□□ 0.87
CDH3-205ENST00000566808 ZAP70P43403 619 aa20.48■□□□□ 0.87
CDH3-205ENST00000566808 TNNI3KQ59H18 835 aa20.48■□□□□ 0.87
CDH3-205ENST00000566808 LENG1Q96BZ8 264 aaPredicted RBP20.48■□□□□ 0.87
CDH3-205ENST00000566808 ATG4CQ96DT6 458 aa20.48■□□□□ 0.87
CDH3-205ENST00000566808 MMP19Q99542 508 aa20.48■□□□□ 0.87
CDH3-205ENST00000566808 MSRAQ9UJ68 235 aa20.48■□□□□ 0.87
CDH3-205ENST00000566808 DIS3Q9Y2L1 958 aaKnown RBP20.48■□□□□ 0.87
CDH3-205ENST00000566808 FPGT-TNNI3KV9GXZ4 949 aa20.48■□□□□ 0.87
CDH3-205ENST00000566808 IDH1O75874 414 aaKnown RBP20.47■□□□□ 0.87
CDH3-205ENST00000566808 CT47B1P0C2W7 299 aaPredicted RBP20.47■□□□□ 0.87
CDH3-205ENST00000566808 TMED8Q6PL24 325 aaPredicted RBP20.47■□□□□ 0.87
CDH3-205ENST00000566808 C16orf59Q7L2K0 433 aa20.47■□□□□ 0.87
CDH3-205ENST00000566808 ZNF865P0CJ78 1059 aaPredicted RBP20.46■□□□□ 0.87
CDH3-205ENST00000566808 TAL1P17542 331 aaPredicted RBP20.46■□□□□ 0.87
CDH3-205ENST00000566808 PLCD1P51178 756 aa20.46■□□□□ 0.87
CDH3-205ENST00000566808 GABPAQ06546 454 aa20.46■□□□□ 0.87
CDH3-205ENST00000566808 KCTD2Q14681 263 aa20.46■□□□□ 0.87
CDH3-205ENST00000566808 TMEM199Q8N511 208 aa20.46■□□□□ 0.87
CDH3-205ENST00000566808 NECAB3Q96P71 396 aaPredicted RBP20.46■□□□□ 0.87
CDH3-205ENST00000566808 MTIF3Q9H2K0 278 aaKnown RBP20.46■□□□□ 0.87
CDH3-205ENST00000566808 CNPY2Q9Y2B0 182 aa20.46■□□□□ 0.87
CDH3-205ENST00000566808 PNMA6EA0A0J9YXQ4 647 aa20.45■□□□□ 0.86
CDH3-205ENST00000566808 MPHOSPH10O00566 681 aaKnown RBP20.45■□□□□ 0.86
CDH3-205ENST00000566808 PGK2P07205 417 aa20.45■□□□□ 0.86
CDH3-205ENST00000566808 CSF2RAP15509 400 aa20.45■□□□□ 0.86
CDH3-205ENST00000566808 AAK1Q2M2I8 961 aa20.45■□□□□ 0.86
CDH3-205ENST00000566808 KLHDC9Q8NEP7 349 aa20.45■□□□□ 0.86
CDH3-205ENST00000566808 GLT1D1Q96MS3 346 aa20.45■□□□□ 0.86
CDH3-205ENST00000566808 ELP1O95163 1332 aa20.45■□□□□ 0.86
CDH3-205ENST00000566808 PRRC2BQ5JSZ5 2229 aaKnown RBP20.44■□□□□ 0.86
CDH3-205ENST00000566808 GNAI2P04899 355 aa20.44■□□□□ 0.86
CDH3-205ENST00000566808 CST5P28325 142 aaPredicted RBP20.44■□□□□ 0.86
CDH3-205ENST00000566808 TMEM132BQ14DG7 1078 aa20.44■□□□□ 0.86
CDH3-205ENST00000566808 ZNF792Q3KQV3 632 aa20.44■□□□□ 0.86
CDH3-205ENST00000566808 KIAA1755Q5JYT7 1200 aa20.44■□□□□ 0.86
CDH3-205ENST00000566808 TMEM179Q6ZVK1 233 aa20.44■□□□□ 0.86
CDH3-205ENST00000566808 ZNF365Q70YC5 407 aa20.44■□□□□ 0.86
CDH3-205ENST00000566808 MSL3Q8N5Y2 521 aaKnown RBP20.44■□□□□ 0.86
CDH3-205ENST00000566808 MAGEB6Q8N7X4 407 aa20.44■□□□□ 0.86
CDH3-205ENST00000566808 SH2D4AQ9H788 454 aa20.44■□□□□ 0.86
CDH3-205ENST00000566808 SLC28A3Q9HAS3 691 aa20.44■□□□□ 0.86
CDH3-205ENST00000566808 MCM3APO60318 1980 aa20.44■□□□□ 0.86
CDH3-205ENST00000566808 LRRC37A2A6NM11 1700 aa20.44■□□□□ 0.86
CDH3-205ENST00000566808 APBB1O00213 710 aa20.43■□□□□ 0.86
CDH3-205ENST00000566808 WDR46O15213 610 aaKnown RBP20.43■□□□□ 0.86
CDH3-205ENST00000566808 POLR3DP05423 398 aaPredicted RBP20.43■□□□□ 0.86
CDH3-205ENST00000566808 BMP1P13497 986 aa20.43■□□□□ 0.86
CDH3-205ENST00000566808 COPB2P35606 906 aa20.43■□□□□ 0.86
CDH3-205ENST00000566808 KCNA10Q16322 511 aa20.43■□□□□ 0.86
CDH3-205ENST00000566808 CCSAPQ6IQ19 270 aaPredicted RBP20.43■□□□□ 0.86
CDH3-205ENST00000566808 RIOX2Q8IUF8 465 aa20.43■□□□□ 0.86
CDH3-205ENST00000566808 HERVK_113Q902F9 699 aa20.43■□□□□ 0.86
CDH3-205ENST00000566808 ARHGEF10LQ9HCE6 1279 aa20.43■□□□□ 0.86
CDH3-205ENST00000566808 CDK7P50613 346 aa20.42■□□□□ 0.86
CDH3-205ENST00000566808 SPICE1Q8N0Z3 855 aa20.42■□□□□ 0.86
CDH3-205ENST00000566808 ARHGAP45Q92619 1136 aa20.42■□□□□ 0.86
CDH3-205ENST00000566808 CDCA7LQ96GN5 454 aa20.42■□□□□ 0.86
CDH3-205ENST00000566808 NKX2-4Q9H2Z4 354 aa20.42■□□□□ 0.86
CDH3-205ENST00000566808 VCPKMTQ9H867 229 aa20.42■□□□□ 0.86
CDH3-205ENST00000566808 FAM184BQ9ULE4 1060 aa20.42■□□□□ 0.86
CDH3-205ENST00000566808 ACRP10323 421 aa20.41■□□□□ 0.86
CDH3-205ENST00000566808 OS9Q13438 667 aaPredicted RBP20.41■□□□□ 0.86
CDH3-205ENST00000566808 RIOK1Q9BRS2 568 aaKnown RBP20.41■□□□□ 0.86
CDH3-205ENST00000566808 IL23AQ9NPF7 189 aa20.41■□□□□ 0.86
CDH3-205ENST00000566808 DBNLQ9UJU6 430 aaKnown RBP20.41■□□□□ 0.86
CDH3-205ENST00000566808 ADAMTS5Q9UNA0 930 aa20.41■□□□□ 0.86
CDH3-205ENST00000566808 TMX2Q9Y320 296 aa20.41■□□□□ 0.86
CDH3-205ENST00000566808 A0A0U1RQG5 324 aaPredicted RBP20.4■□□□□ 0.86
CDH3-205ENST00000566808 TLR3O15455 904 aaKnown RBP20.4■□□□□ 0.86
CDH3-205ENST00000566808 DUSP11O75319 330 aaKnown RBP20.4■□□□□ 0.86
CDH3-205ENST00000566808 TFF2Q03403 129 aa20.4■□□□□ 0.86
CDH3-205ENST00000566808 ICA1Q05084 483 aa20.4■□□□□ 0.86
CDH3-205ENST00000566808 SAMD1Q6SPF0 538 aaPredicted RBP20.4■□□□□ 0.86
CDH3-205ENST00000566808 FAM126BQ8IXS8 530 aa20.4■□□□□ 0.86
CDH3-205ENST00000566808 PCSK9Q8NBP7 692 aaKnown RBP20.4■□□□□ 0.86
CDH3-205ENST00000566808 LRFN3Q9BTN0 628 aa20.4■□□□□ 0.86
CDH3-205ENST00000566808 PPP1R12CQ9BZL4 782 aa20.4■□□□□ 0.86
CDH3-205ENST00000566808 YBX2Q9Y2T7 364 aaKnown RBP20.4■□□□□ 0.86
CDH3-205ENST00000566808 MYADML2A6NDP7 307 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms