RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 PHLPP2Q6ZVD8 1323 aa15.28■□□□□ 0.04
CLK3-215ENST00000564353 A0A1B0GTH6 734 aa15.28■□□□□ 0.04
CLK3-215ENST00000564353 RCSD1Q6JBY9 416 aa15.28■□□□□ 0.04
CLK3-215ENST00000564353 KANK3Q6NY19 840 aa15.28■□□□□ 0.04
CLK3-215ENST00000564353 MAPKAPK5Q8IW41 473 aa15.28■□□□□ 0.04
CLK3-215ENST00000564353 TGFBRAP1Q8WUH2 860 aa15.28■□□□□ 0.04
CLK3-215ENST00000564353 NGLY1Q96IV0 654 aa15.28■□□□□ 0.04
CLK3-215ENST00000564353 KAT14Q9H8E8 782 aa15.28■□□□□ 0.04
CLK3-215ENST00000564353 IL17RBQ9NRM6 502 aa15.28■□□□□ 0.04
CLK3-215ENST00000564353 LRP5O75197 1615 aa15.28■□□□□ 0.04
CLK3-215ENST00000564353 STX10O60499 249 aa15.27■□□□□ 0.04
CLK3-215ENST00000564353 H2AFXP16104 143 aaPredicted RBP15.27■□□□□ 0.04
CLK3-215ENST00000564353 NFIXQ14938 502 aa15.27■□□□□ 0.04
CLK3-215ENST00000564353 INF2Q27J81 1249 aa15.27■□□□□ 0.04
CLK3-215ENST00000564353 SPATA20Q8TB22 786 aa15.27■□□□□ 0.04
CLK3-215ENST00000564353 MKNK2Q9HBH9 465 aa15.27■□□□□ 0.04
CLK3-215ENST00000564353 ZCCHC17Q9NP64 241 aaKnown RBP15.27■□□□□ 0.04
CLK3-215ENST00000564353 TADA3O75528 432 aa15.27■□□□□ 0.03
CLK3-215ENST00000564353 PPP2R3AQ06190 1150 aa15.27■□□□□ 0.03
CLK3-215ENST00000564353 SF3B3Q15393 1217 aaKnown RBP15.27■□□□□ 0.03
CLK3-215ENST00000564353 FBXO33Q7Z6M2 555 aa15.27■□□□□ 0.03
CLK3-215ENST00000564353 TMEM60Q9H2L4 133 aa15.27■□□□□ 0.03
CLK3-215ENST00000564353 ADD3Q9UEY8 706 aaKnown RBP15.27■□□□□ 0.03
CLK3-215ENST00000564353 FHOD1Q9Y613 1164 aa15.27■□□□□ 0.03
CLK3-215ENST00000564353 GYPCP04921 128 aa15.26■□□□□ 0.03
CLK3-215ENST00000564353 ATP2C1P98194 919 aaPredicted RBP15.26■□□□□ 0.03
CLK3-215ENST00000564353 KRT31Q15323 416 aa15.26■□□□□ 0.03
CLK3-215ENST00000564353 PNMA1Q8ND90 353 aa15.26■□□□□ 0.03
CLK3-215ENST00000564353 NUP88Q99567 741 aaPredicted RBP15.26■□□□□ 0.03
CLK3-215ENST00000564353 RBM28Q9NW13 759 aaKnown RBP15.26■□□□□ 0.03
CLK3-215ENST00000564353 THRAP3Q9Y2W1 955 aaKnown RBP15.26■□□□□ 0.03
CLK3-215ENST00000564353 CHD4Q14839 1912 aa15.26■□□□□ 0.03
CLK3-215ENST00000564353 NID2Q14112 1375 aa15.26■□□□□ 0.03
CLK3-215ENST00000564353 CCP110O43303 1012 aa15.26■□□□□ 0.03
CLK3-215ENST00000564353 PMS1P54277 932 aaKnown RBP15.26■□□□□ 0.03
CLK3-215ENST00000564353 ZNF569Q5MCW4 686 aa15.26■□□□□ 0.03
CLK3-215ENST00000564353 NELFBQ8WX92 580 aa15.26■□□□□ 0.03
CLK3-215ENST00000564353 RNF216Q9NWF9 866 aaPredicted RBP15.26■□□□□ 0.03
CLK3-215ENST00000564353 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.26■□□□□ 0.03
CLK3-215ENST00000564353 UBAP1LF5GYI3 381 aa15.25■□□□□ 0.03
CLK3-215ENST00000564353 PNMA6AP0CW24 399 aaPredicted RBP15.25■□□□□ 0.03
CLK3-215ENST00000564353 ERCC5P28715 1186 aaPredicted RBP15.25■□□□□ 0.03
CLK3-215ENST00000564353 KCNJ6P48051 423 aa15.25■□□□□ 0.03
CLK3-215ENST00000564353 SLC35G1Q2M3R5 365 aa15.25■□□□□ 0.03
CLK3-215ENST00000564353 SAMD1Q6SPF0 538 aaPredicted RBP15.25■□□□□ 0.03
CLK3-215ENST00000564353 SH3RF1Q7Z6J0 888 aa15.25■□□□□ 0.03
CLK3-215ENST00000564353 IQUBQ8NA54 791 aa15.25■□□□□ 0.03
CLK3-215ENST00000564353 KIFC2Q96AC6 838 aa15.25■□□□□ 0.03
CLK3-215ENST00000564353 CDCA7Q9BWT1 371 aaPredicted RBP15.25■□□□□ 0.03
CLK3-215ENST00000564353 TRIM10Q9UDY6 481 aa15.25■□□□□ 0.03
CLK3-215ENST00000564353 TOM1O60784 492 aa15.25■□□□□ 0.03
CLK3-215ENST00000564353 ZPR1O75312 459 aa15.25■□□□□ 0.03
CLK3-215ENST00000564353 STAT6P42226 847 aa15.25■□□□□ 0.03
CLK3-215ENST00000564353 PRCPP42785 496 aa15.25■□□□□ 0.03
CLK3-215ENST00000564353 GYS2P54840 703 aa15.25■□□□□ 0.03
CLK3-215ENST00000564353 TMCO3Q6UWJ1 677 aa15.25■□□□□ 0.03
CLK3-215ENST00000564353 TRIML1Q8N9V2 468 aa15.25■□□□□ 0.03
CLK3-215ENST00000564353 HPS3Q969F9 1004 aa15.25■□□□□ 0.03
CLK3-215ENST00000564353 FERMT2Q96AC1 680 aa15.25■□□□□ 0.03
CLK3-215ENST00000564353 GTPBP4Q9BZE4 634 aaKnown RBP15.25■□□□□ 0.03
CLK3-215ENST00000564353 CCDC175P0C221 793 aa15.25■□□□□ 0.03
CLK3-215ENST00000564353 PFKFB3Q16875 520 aaPredicted RBP15.25■□□□□ 0.03
CLK3-215ENST00000564353 SLF1Q9BQI6 1058 aa15.25■□□□□ 0.03
CLK3-215ENST00000564353 ADGRG1Q9Y653 693 aa15.25■□□□□ 0.03
CLK3-215ENST00000564353 PHLPP1O60346 1717 aa15.25■□□□□ 0.03
CLK3-215ENST00000564353 DDAH1O94760 285 aa15.24■□□□□ 0.03
CLK3-215ENST00000564353 E2F4Q16254 413 aa15.24■□□□□ 0.03
CLK3-215ENST00000564353 PDXDC2PQ6P474 469 aa15.24■□□□□ 0.03
CLK3-215ENST00000564353 BLIDQ8IZY5 108 aa15.24■□□□□ 0.03
CLK3-215ENST00000564353 COL22A1Q8NFW1 1626 aaPredicted RBP15.24■□□□□ 0.03
CLK3-215ENST00000564353 CYTH3O43739 400 aa15.24■□□□□ 0.03
CLK3-215ENST00000564353 SASH3O75995 380 aa15.24■□□□□ 0.03
CLK3-215ENST00000564353 KIF20AO95235 890 aa15.24■□□□□ 0.03
CLK3-215ENST00000564353 TSPY3P0CV98 308 aa15.24■□□□□ 0.03
CLK3-215ENST00000564353 TSPY8P0CW00 308 aa15.24■□□□□ 0.03
CLK3-215ENST00000564353 CALM1P0DP23 149 aa15.24■□□□□ 0.03
CLK3-215ENST00000564353 CALM2P0DP24 149 aa15.24■□□□□ 0.03
CLK3-215ENST00000564353 CALM3P0DP25 149 aa15.24■□□□□ 0.03
CLK3-215ENST00000564353 GSDMAQ96QA5 445 aa15.24■□□□□ 0.03
CLK3-215ENST00000564353 CHP1Q99653 195 aa15.24■□□□□ 0.03
CLK3-215ENST00000564353 MYH13Q9UKX3 1938 aa15.24■□□□□ 0.03
CLK3-215ENST00000564353 DUOX1Q9NRD9 1551 aa15.24■□□□□ 0.03
CLK3-215ENST00000564353 TIAM2Q8IVF5 1701 aa15.24■□□□□ 0.03
CLK3-215ENST00000564353 PLCH1Q4KWH8 1693 aa15.23■□□□□ 0.03
CLK3-215ENST00000564353 CCDC194A0A1B0GVG4 234 aa15.23■□□□□ 0.03
CLK3-215ENST00000564353 NKRFO15226 690 aaKnown RBP eCLIP15.23■□□□□ 0.03
CLK3-215ENST00000564353 MFAP3LO75121 409 aa15.23■□□□□ 0.03
CLK3-215ENST00000564353 RPN1P04843 607 aaKnown RBP15.23■□□□□ 0.03
CLK3-215ENST00000564353 PLA2G4AP47712 749 aa15.23■□□□□ 0.03
CLK3-215ENST00000564353 EIF6P56537 245 aaKnown RBP15.23■□□□□ 0.03
CLK3-215ENST00000564353 ERVK-24P63145 666 aa15.23■□□□□ 0.03
CLK3-215ENST00000564353 UBXN1Q04323 297 aa15.23■□□□□ 0.03
CLK3-215ENST00000564353 FILIP1LQ4L180 1135 aa15.23■□□□□ 0.03
CLK3-215ENST00000564353 CDKAL1Q5VV42 579 aa15.23■□□□□ 0.03
CLK3-215ENST00000564353 WWC2Q6AWC2 1192 aa15.23■□□□□ 0.03
CLK3-215ENST00000564353 LRRC15Q8TF66 581 aa15.23■□□□□ 0.03
CLK3-215ENST00000564353 MRFAP1Q9Y605 127 aa15.23■□□□□ 0.03
CLK3-215ENST00000564353 DOCK2Q92608 1830 aa15.23■□□□□ 0.03
CLK3-215ENST00000564353 MAP3K9P80192 1104 aa15.23■□□□□ 0.03
CLK3-215ENST00000564353 PAK1Q13153 545 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms