RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 STK11IPQ8N1F8 1099 aa20.26■□□□□ 0.83
CLN3-211ENST00000564091 MAML3Q96JK9 1138 aa20.26■□□□□ 0.83
CLN3-211ENST00000564091 LBHD1Q9BQE6 289 aaPredicted RBP20.26■□□□□ 0.83
CLN3-211ENST00000564091 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.26■□□□□ 0.83
CLN3-211ENST00000564091 ADAMTS5Q9UNA0 930 aa20.26■□□□□ 0.83
CLN3-211ENST00000564091 ATP11BQ9Y2G3 1177 aa20.26■□□□□ 0.83
CLN3-211ENST00000564091 PGK2P07205 417 aa20.25■□□□□ 0.83
CLN3-211ENST00000564091 MTMR10Q9NXD2 777 aa20.25■□□□□ 0.83
CLN3-211ENST00000564091 LAMA2P24043 3122 aaKnown RBP20.25■□□□□ 0.83
CLN3-211ENST00000564091 KBTBD13C9JR72 458 aa20.24■□□□□ 0.83
CLN3-211ENST00000564091 SLC25A27O95847 323 aa20.24■□□□□ 0.83
CLN3-211ENST00000564091 STAT3P40763 770 aa20.24■□□□□ 0.83
CLN3-211ENST00000564091 FAM83BQ5T0W9 1011 aa20.24■□□□□ 0.83
CLN3-211ENST00000564091 SLC39A5Q6ZMH5 540 aa20.24■□□□□ 0.83
CLN3-211ENST00000564091 STRBPQ96SI9 672 aaKnown RBP20.24■□□□□ 0.83
CLN3-211ENST00000564091 MMP19Q99542 508 aa20.24■□□□□ 0.83
CLN3-211ENST00000564091 ECHDC1Q9NTX5 307 aa20.24■□□□□ 0.83
CLN3-211ENST00000564091 PRKAG2Q9UGJ0 569 aa20.24■□□□□ 0.83
CLN3-211ENST00000564091 PPP1R9AQ9ULJ8 1098 aa20.24■□□□□ 0.83
CLN3-211ENST00000564091 VWA5AO00534 786 aa20.23■□□□□ 0.83
CLN3-211ENST00000564091 ADCYAP1R1P41586 468 aa20.23■□□□□ 0.83
CLN3-211ENST00000564091 FAM47AQ5JRC9 791 aa20.23■□□□□ 0.83
CLN3-211ENST00000564091 TSHZ3Q63HK5 1081 aa20.23■□□□□ 0.83
CLN3-211ENST00000564091 RIOX2Q8IUF8 465 aa20.23■□□□□ 0.83
CLN3-211ENST00000564091 FERMT2Q96AC1 680 aa20.23■□□□□ 0.83
CLN3-211ENST00000564091 NUP88Q99567 741 aaPredicted RBP20.23■□□□□ 0.83
CLN3-211ENST00000564091 GOPCQ9HD26 462 aa20.23■□□□□ 0.83
CLN3-211ENST00000564091 ARPP21Q9UBL0 812 aaPredicted RBP20.23■□□□□ 0.83
CLN3-211ENST00000564091 NAV1Q8NEY1 1877 aa20.22■□□□□ 0.83
CLN3-211ENST00000564091 GSG1L2A8MUP6 293 aa20.22■□□□□ 0.83
CLN3-211ENST00000564091 MINDY4BA8MYZ0 360 aa20.22■□□□□ 0.83
CLN3-211ENST00000564091 DLL1O00548 723 aa20.22■□□□□ 0.83
CLN3-211ENST00000564091 KCTD2Q14681 263 aa20.22■□□□□ 0.83
CLN3-211ENST00000564091 LRRC41Q15345 812 aa20.22■□□□□ 0.83
CLN3-211ENST00000564091 TRIM60Q495X7 471 aa20.22■□□□□ 0.83
CLN3-211ENST00000564091 OSBP2Q969R2 916 aa20.22■□□□□ 0.83
CLN3-211ENST00000564091 ZNF214Q9UL59 606 aaPredicted RBP20.22■□□□□ 0.83
CLN3-211ENST00000564091 TAL1P17542 331 aaPredicted RBP20.21■□□□□ 0.83
CLN3-211ENST00000564091 RASA1P20936 1047 aa20.21■□□□□ 0.83
CLN3-211ENST00000564091 ZNF792Q3KQV3 632 aa20.21■□□□□ 0.83
CLN3-211ENST00000564091 REPS2Q8NFH8 660 aa20.21■□□□□ 0.83
CLN3-211ENST00000564091 MKNK2Q9HBH9 465 aa20.21■□□□□ 0.83
CLN3-211ENST00000564091 PRDM5Q9NQX1 630 aaPredicted RBP20.21■□□□□ 0.83
CLN3-211ENST00000564091 STXBP5LQ9Y2K9 1186 aa20.21■□□□□ 0.83
CLN3-211ENST00000564091 SBK1Q52WX2 424 aa20.2■□□□□ 0.82
CLN3-211ENST00000564091 KBTBD3Q8NAB2 608 aa20.2■□□□□ 0.82
CLN3-211ENST00000564091 TINF2Q9BSI4 451 aa20.2■□□□□ 0.82
CLN3-211ENST00000564091 SLF1Q9BQI6 1058 aa20.19■□□□□ 0.82
CLN3-211ENST00000564091 DCTPP1Q9H773 170 aa20.19■□□□□ 0.82
CLN3-211ENST00000564091 XPNPEP3Q9NQH7 507 aa20.19■□□□□ 0.82
CLN3-211ENST00000564091 F5H6K3 240 aa20.18■□□□□ 0.82
CLN3-211ENST00000564091 POTEB2H3BUK9 544 aa20.18■□□□□ 0.82
CLN3-211ENST00000564091 RNF113AO15541 343 aaKnown RBP20.18■□□□□ 0.82
CLN3-211ENST00000564091 NDUFB10O96000 172 aa20.18■□□□□ 0.82
CLN3-211ENST00000564091 PGK1P00558 417 aa20.18■□□□□ 0.82
CLN3-211ENST00000564091 RARBP10826 455 aa20.18■□□□□ 0.82
CLN3-211ENST00000564091 KLRC3Q07444 240 aa20.18■□□□□ 0.82
CLN3-211ENST00000564091 SNX17Q15036 470 aa20.18■□□□□ 0.82
CLN3-211ENST00000564091 GIMAP6Q6P9H5 292 aa20.18■□□□□ 0.82
CLN3-211ENST00000564091 SH3RF1Q7Z6J0 888 aa20.18■□□□□ 0.82
CLN3-211ENST00000564091 APPBP2Q92624 585 aa20.18■□□□□ 0.82
CLN3-211ENST00000564091 BADQ92934 168 aa20.18■□□□□ 0.82
CLN3-211ENST00000564091 LENG1Q96BZ8 264 aaPredicted RBP20.18■□□□□ 0.82
CLN3-211ENST00000564091 FAM161BQ96MY7 647 aa20.18■□□□□ 0.82
CLN3-211ENST00000564091 EPB41L4AQ9HCS5 686 aaPredicted RBP20.18■□□□□ 0.82
CLN3-211ENST00000564091 NYAP2Q9P242 653 aa20.18■□□□□ 0.82
CLN3-211ENST00000564091 CLIP2Q9UDT6 1046 aa20.18■□□□□ 0.82
CLN3-211ENST00000564091 NRBP1Q9UHY1 535 aa20.18■□□□□ 0.82
CLN3-211ENST00000564091 DIS3Q9Y2L1 958 aaKnown RBP20.18■□□□□ 0.82
CLN3-211ENST00000564091 GPAA1O43292 621 aa20.17■□□□□ 0.82
CLN3-211ENST00000564091 PRDM1O75626 825 aa20.17■□□□□ 0.82
CLN3-211ENST00000564091 ZNF865P0CJ78 1059 aaPredicted RBP20.17■□□□□ 0.82
CLN3-211ENST00000564091 SLC4A3P48751 1232 aa20.17■□□□□ 0.82
CLN3-211ENST00000564091 TLE2Q04725 743 aa20.17■□□□□ 0.82
CLN3-211ENST00000564091 SHHQ15465 462 aa20.17■□□□□ 0.82
CLN3-211ENST00000564091 C9orf50Q5SZB4 431 aa20.17■□□□□ 0.82
CLN3-211ENST00000564091 PDLIM7Q9NR12 457 aa20.17■□□□□ 0.82
CLN3-211ENST00000564091 RIPK3Q9Y572 518 aa20.17■□□□□ 0.82
CLN3-211ENST00000564091 RLFQ13129 1914 aa20.16■□□□□ 0.82
CLN3-211ENST00000564091 TRIM43BA6NCK2 446 aa20.16■□□□□ 0.82
CLN3-211ENST00000564091 M0R2C6 588 aa20.16■□□□□ 0.82
CLN3-211ENST00000564091 COPB2P35606 906 aa20.16■□□□□ 0.82
CLN3-211ENST00000564091 SNRNP48Q6IEG0 339 aaKnown RBP20.16■□□□□ 0.82
CLN3-211ENST00000564091 CPXCR1Q8N123 301 aa20.16■□□□□ 0.82
CLN3-211ENST00000564091 TRIM43Q96BQ3 446 aaPredicted RBP20.16■□□□□ 0.82
CLN3-211ENST00000564091 GPATCH3Q96I76 525 aa20.16■□□□□ 0.82
CLN3-211ENST00000564091 TEX13BQ9BXU2 312 aa20.16■□□□□ 0.82
CLN3-211ENST00000564091 PHF24Q9UPV7 400 aa20.16■□□□□ 0.82
CLN3-211ENST00000564091 APPP05067 770 aa20.15■□□□□ 0.82
CLN3-211ENST00000564091 TDO2P48775 406 aa20.15■□□□□ 0.82
CLN3-211ENST00000564091 RNF180Q86T96 592 aa20.15■□□□□ 0.82
CLN3-211ENST00000564091 ZNF444Q8N0Y2 327 aaPredicted RBP20.15■□□□□ 0.82
CLN3-211ENST00000564091 GUCD1Q96NT3 240 aa20.15■□□□□ 0.82
CLN3-211ENST00000564091 CNPY2Q9Y2B0 182 aa20.15■□□□□ 0.82
CLN3-211ENST00000564091 A0A0G2JMZ2 1700 aa20.15■□□□□ 0.82
CLN3-211ENST00000564091 CUL9Q8IWT3 2517 aa20.15■□□□□ 0.82
CLN3-211ENST00000564091 ZNF236Q9UL36 1845 aa20.14■□□□□ 0.81
CLN3-211ENST00000564091 IGKV6D-41A0A0C4DH26 115 aa20.14■□□□□ 0.81
CLN3-211ENST00000564091 AKR1A1P14550 325 aa20.14■□□□□ 0.81
CLN3-211ENST00000564091 C1orf53Q5VUE5 145 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms