RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 KIF22Q14807 665 aa10.36□□□□□ -0.75
VPS39-207ENST00000563692 SEC23AQ15436 765 aa10.36□□□□□ -0.75
VPS39-207ENST00000563692 FOXD4L6Q3SYB3 417 aaPredicted RBP10.36□□□□□ -0.75
VPS39-207ENST00000563692 FOXD4L3Q6VB84 417 aaPredicted RBP10.36□□□□□ -0.75
VPS39-207ENST00000563692 SCYL3Q8IZE3 742 aa10.36□□□□□ -0.75
VPS39-207ENST00000563692 ZNF654Q8IZM8 581 aa10.36□□□□□ -0.75
VPS39-207ENST00000563692 FAM43AQ8N2R8 423 aa10.36□□□□□ -0.75
VPS39-207ENST00000563692 NUP133Q8WUM0 1156 aa10.36□□□□□ -0.75
VPS39-207ENST00000563692 ZNF396Q96N95 335 aaPredicted RBP10.36□□□□□ -0.75
VPS39-207ENST00000563692 TRIM34Q9BYJ4 488 aa10.36□□□□□ -0.75
VPS39-207ENST00000563692 SCAND2PQ9GZW5 306 aaPredicted RBP10.36□□□□□ -0.75
VPS39-207ENST00000563692 EFCC1Q9HA90 598 aa10.36□□□□□ -0.75
VPS39-207ENST00000563692 DDX4Q9NQI0 724 aaKnown RBP10.36□□□□□ -0.75
VPS39-207ENST00000563692 TCP11L1Q9NUJ3 509 aa10.36□□□□□ -0.75
VPS39-207ENST00000563692 SAP30BPQ9UHR5 308 aaKnown RBP10.36□□□□□ -0.75
VPS39-207ENST00000563692 TAOK2Q9UL54 1235 aa10.36□□□□□ -0.75
VPS39-207ENST00000563692 FLT1P17948 1338 aa10.35□□□□□ -0.75
VPS39-207ENST00000563692 DDTLA6NHG4 134 aaPredicted RBP10.35□□□□□ -0.75
VPS39-207ENST00000563692 BTBD19C9JJ37 291 aa10.35□□□□□ -0.75
VPS39-207ENST00000563692 CXCL11O14625 94 aa10.35□□□□□ -0.75
VPS39-207ENST00000563692 DDAH1O94760 285 aa10.35□□□□□ -0.75
VPS39-207ENST00000563692 HLA-DOAP06340 250 aa10.35□□□□□ -0.75
VPS39-207ENST00000563692 FDPSP14324 419 aaKnown RBP10.35□□□□□ -0.75
VPS39-207ENST00000563692 IFNAR1P17181 557 aa10.35□□□□□ -0.75
VPS39-207ENST00000563692 FAM47AQ5JRC9 791 aa10.35□□□□□ -0.75
VPS39-207ENST00000563692 FASTKD5Q7L8L6 764 aaKnown RBP10.35□□□□□ -0.75
VPS39-207ENST00000563692 RAB11FIP4Q86YS3 637 aa10.35□□□□□ -0.75
VPS39-207ENST00000563692 CCDC144CPQ8IYA2 1237 aa10.35□□□□□ -0.75
VPS39-207ENST00000563692 ENAHQ8N8S7 591 aaPredicted RBP10.35□□□□□ -0.75
VPS39-207ENST00000563692 TMEM87AQ8NBN3 555 aa10.35□□□□□ -0.75
VPS39-207ENST00000563692 CTCFLQ8NI51 663 aaPredicted RBP10.35□□□□□ -0.75
VPS39-207ENST00000563692 NKX2-3Q8TAU0 364 aa10.35□□□□□ -0.75
VPS39-207ENST00000563692 CD99L2Q8TCZ2 262 aa10.35□□□□□ -0.75
VPS39-207ENST00000563692 ANKS1AQ92625 1134 aa10.35□□□□□ -0.75
VPS39-207ENST00000563692 SYAP1Q96A49 352 aaPredicted RBP10.35□□□□□ -0.75
VPS39-207ENST00000563692 OSBPL5Q9H0X9 879 aaPredicted RBP10.35□□□□□ -0.75
VPS39-207ENST00000563692 DHX36Q9H2U1 1008 aaKnown RBP10.35□□□□□ -0.75
VPS39-207ENST00000563692 KAT14Q9H8E8 782 aa10.35□□□□□ -0.75
VPS39-207ENST00000563692 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.35□□□□□ -0.75
VPS39-207ENST00000563692 PI4KBQ9UBF8 816 aa10.35□□□□□ -0.75
VPS39-207ENST00000563692 SWAP70Q9UH65 585 aa10.35□□□□□ -0.75
VPS39-207ENST00000563692 KCNH4Q9UQ05 1017 aa10.35□□□□□ -0.75
VPS39-207ENST00000563692 ZHX2Q9Y6X8 837 aa10.35□□□□□ -0.75
VPS39-207ENST00000563692 ROBO3Q96MS0 1386 aa10.35□□□□□ -0.75
VPS39-207ENST00000563692 MYH2Q9UKX2 1941 aa10.35□□□□□ -0.75
VPS39-207ENST00000563692 STK36Q9NRP7 1315 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 PHF20L1A8MW92 1017 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 TBC1D12O60347 775 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 TLR2O60603 784 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 DTNBO60941 627 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 FMNL1O95466 1100 aaPredicted RBP10.34□□□□□ -0.75
VPS39-207ENST00000563692 XBP1P17861 261 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 PTPRAP18433 802 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 RXRAP19793 462 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 CDC27P30260 824 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 KIF5BP33176 963 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 CDK8P49336 464 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 PLCD1P51178 756 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 UBE2HP62256 183 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 DNM1Q05193 864 aaKnown RBP10.34□□□□□ -0.75
VPS39-207ENST00000563692 PPP4R3BQ5MIZ7 849 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 C16orf86Q6ZW13 317 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 SH3BP5LQ7L8J4 393 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 OTOP1Q7RTM1 612 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 ANKRD23Q86SG2 305 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 FERMT3Q86UX7 667 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 FBXO18Q8NFZ0 1043 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 DYNLL2Q96FJ2 89 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 PARK7Q99497 189 aaKnown RBP10.34□□□□□ -0.75
VPS39-207ENST00000563692 MAP3K14Q99558 947 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 ALG1Q9BT22 464 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 SENP2Q9HC62 589 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 HERC5Q9UII4 1024 aaKnown RBP10.34□□□□□ -0.75
VPS39-207ENST00000563692 CNPY2Q9Y2B0 182 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 NID2Q14112 1375 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 ATRNL1Q5VV63 1379 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 OTOFQ9HC10 1997 aa10.34□□□□□ -0.75
VPS39-207ENST00000563692 GOLGA6L4A6NEF3 574 aa10.33□□□□□ -0.76
VPS39-207ENST00000563692 PDHXO00330 501 aa10.33□□□□□ -0.76
VPS39-207ENST00000563692 DEXIO95424 95 aa10.33□□□□□ -0.76
VPS39-207ENST00000563692 RGS19P49795 217 aa10.33□□□□□ -0.76
VPS39-207ENST00000563692 GNAQP50148 359 aa10.33□□□□□ -0.76
VPS39-207ENST00000563692 SOX10P56693 466 aa10.33□□□□□ -0.76
VPS39-207ENST00000563692 MAP3K10Q02779 954 aa10.33□□□□□ -0.76
VPS39-207ENST00000563692 RESTQ13127 1097 aa10.33□□□□□ -0.76
VPS39-207ENST00000563692 GNL2Q13823 731 aaKnown RBP10.33□□□□□ -0.76
VPS39-207ENST00000563692 SAFBQ15424 915 aaKnown RBP eCLIP10.33□□□□□ -0.76
VPS39-207ENST00000563692 NTRK3Q16288 839 aa10.33□□□□□ -0.76
VPS39-207ENST00000563692 BRAPQ7Z569 592 aa10.33□□□□□ -0.76
VPS39-207ENST00000563692 CRACR2BQ8N4Y2 399 aaPredicted RBP10.33□□□□□ -0.76
VPS39-207ENST00000563692 NEDD1Q8NHV4 660 aa10.33□□□□□ -0.76
VPS39-207ENST00000563692 MYL10Q9BUA6 226 aa10.33□□□□□ -0.76
VPS39-207ENST00000563692 SLC26A6Q9BXS9 759 aa10.33□□□□□ -0.76
VPS39-207ENST00000563692 GZF1Q9H116 711 aaPredicted RBP10.33□□□□□ -0.76
VPS39-207ENST00000563692 FAM217BQ9NTX9 383 aaPredicted RBP10.33□□□□□ -0.76
VPS39-207ENST00000563692 COL2A1P02458 1487 aaPredicted RBP10.32□□□□□ -0.76
VPS39-207ENST00000563692 TRIM75PA6NK02 468 aa10.32□□□□□ -0.76
VPS39-207ENST00000563692 SMIM22K7EJ46 135 aa10.32□□□□□ -0.76
VPS39-207ENST00000563692 FIBPO43427 364 aa10.32□□□□□ -0.76
VPS39-207ENST00000563692 LETM1O95202 739 aaPredicted RBP10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms