RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.79□□□□□ -0.52
SMG1-208ENST00000563448 DCAF4Q8WV16 495 aa11.79□□□□□ -0.52
SMG1-208ENST00000563448 LZTS2Q9BRK4 669 aa11.79□□□□□ -0.52
SMG1-208ENST00000563448 NMRK2Q9NPI5 230 aa11.79□□□□□ -0.52
SMG1-208ENST00000563448 GJB4Q9NTQ9 266 aa11.79□□□□□ -0.52
SMG1-208ENST00000563448 V9GY48 417 aaPredicted RBP11.79□□□□□ -0.52
SMG1-208ENST00000563448 PDIA4P13667 645 aaKnown RBP11.79□□□□□ -0.52
SMG1-208ENST00000563448 KIAA1755Q5JYT7 1200 aa11.79□□□□□ -0.52
SMG1-208ENST00000563448 NOL9Q5SY16 702 aaKnown RBP11.79□□□□□ -0.52
SMG1-208ENST00000563448 MAP1SQ66K74 1059 aaPredicted RBP11.79□□□□□ -0.52
SMG1-208ENST00000563448 C8orf76Q96K31 380 aa11.79□□□□□ -0.52
SMG1-208ENST00000563448 SPZ1Q9BXG8 430 aa11.79□□□□□ -0.52
SMG1-208ENST00000563448 GPCPD1Q9NPB8 672 aa11.79□□□□□ -0.52
SMG1-208ENST00000563448 RLFQ13129 1914 aa11.79□□□□□ -0.52
SMG1-208ENST00000563448 COL11A1P12107 1806 aaPredicted RBP11.78□□□□□ -0.52
SMG1-208ENST00000563448 RAD21O60216 631 aa11.78□□□□□ -0.52
SMG1-208ENST00000563448 NDUFB10O96000 172 aa11.78□□□□□ -0.52
SMG1-208ENST00000563448 F13A1P00488 732 aa11.78□□□□□ -0.52
SMG1-208ENST00000563448 SMARCA1P28370 1054 aa11.78□□□□□ -0.52
SMG1-208ENST00000563448 GUCY1B3Q02153 619 aa11.78□□□□□ -0.52
SMG1-208ENST00000563448 OTUD7BQ6GQQ9 843 aa11.78□□□□□ -0.52
SMG1-208ENST00000563448 TTBK2Q6IQ55 1244 aa11.78□□□□□ -0.52
SMG1-208ENST00000563448 KCTD1Q719H9 257 aa11.78□□□□□ -0.52
SMG1-208ENST00000563448 WASF1Q92558 559 aa11.78□□□□□ -0.52
SMG1-208ENST00000563448 UBA5Q9GZZ9 404 aa11.78□□□□□ -0.52
SMG1-208ENST00000563448 H3BQV1 296 aa11.77□□□□□ -0.52
SMG1-208ENST00000563448 PTPRAP18433 802 aa11.77□□□□□ -0.52
SMG1-208ENST00000563448 SLC1A4P43007 532 aa11.77□□□□□ -0.52
SMG1-208ENST00000563448 AKAP17AQ02040 695 aaKnown RBP11.77□□□□□ -0.52
SMG1-208ENST00000563448 CCDC96Q2M329 555 aa11.77□□□□□ -0.52
SMG1-208ENST00000563448 GPATCH4Q5T3I0 446 aaKnown RBP11.77□□□□□ -0.52
SMG1-208ENST00000563448 IFFO2Q5TF58 517 aa11.77□□□□□ -0.52
SMG1-208ENST00000563448 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.77□□□□□ -0.52
SMG1-208ENST00000563448 FBXO18Q8NFZ0 1043 aa11.77□□□□□ -0.52
SMG1-208ENST00000563448 ZNF526Q8TF50 670 aaPredicted RBP11.77□□□□□ -0.52
SMG1-208ENST00000563448 SHISA4Q96DD7 197 aa11.77□□□□□ -0.52
SMG1-208ENST00000563448 GMCL1Q96IK5 515 aa11.77□□□□□ -0.52
SMG1-208ENST00000563448 NUP88Q99567 741 aaPredicted RBP11.77□□□□□ -0.52
SMG1-208ENST00000563448 RIOX1Q9H6W3 641 aa11.77□□□□□ -0.52
SMG1-208ENST00000563448 VCPKMTQ9H867 229 aa11.77□□□□□ -0.52
SMG1-208ENST00000563448 GOPCQ9HD26 462 aa11.77□□□□□ -0.52
SMG1-208ENST00000563448 LOC285556D6RIA3 1793 aa11.77□□□□□ -0.52
SMG1-208ENST00000563448 PPP1R12BO60237 982 aaPredicted RBP11.77□□□□□ -0.53
SMG1-208ENST00000563448 NF2P35240 595 aa11.77□□□□□ -0.53
SMG1-208ENST00000563448 MAP3K9P80192 1104 aa11.77□□□□□ -0.53
SMG1-208ENST00000563448 FMR1Q06787 632 aaKnown RBP eCLIP11.77□□□□□ -0.538e-8■■□□□ 13.6
SMG1-208ENST00000563448 ZYXQ15942 572 aaKnown RBP11.77□□□□□ -0.53
SMG1-208ENST00000563448 KRT40Q6A162 431 aa11.77□□□□□ -0.53
SMG1-208ENST00000563448 LDHDQ86WU2 507 aa11.77□□□□□ -0.53
SMG1-208ENST00000563448 SPICE1Q8N0Z3 855 aa11.77□□□□□ -0.53
SMG1-208ENST00000563448 RGS22Q8NE09 1264 aa11.77□□□□□ -0.53
SMG1-208ENST00000563448 PIBF1Q8WXW3 757 aa11.77□□□□□ -0.53
SMG1-208ENST00000563448 SH2D4AQ9H788 454 aa11.77□□□□□ -0.53
SMG1-208ENST00000563448 SNCAIPQ9Y6H5 919 aa11.77□□□□□ -0.53
SMG1-208ENST00000563448 TRAF5O00463 557 aa11.76□□□□□ -0.53
SMG1-208ENST00000563448 SLC16A2P36021 539 aa11.76□□□□□ -0.53
SMG1-208ENST00000563448 VGLL4Q14135 290 aa11.76□□□□□ -0.53
SMG1-208ENST00000563448 MAP3K11Q16584 847 aa11.76□□□□□ -0.53
SMG1-208ENST00000563448 PFKFB3Q16875 520 aaPredicted RBP11.76□□□□□ -0.53
SMG1-208ENST00000563448 MOB2Q70IA6 237 aa11.76□□□□□ -0.53
SMG1-208ENST00000563448 FERMT3Q86UX7 667 aa11.76□□□□□ -0.53
SMG1-208ENST00000563448 WDR18Q9BV38 432 aa11.76□□□□□ -0.53
SMG1-208ENST00000563448 VAT1LQ9HCJ6 419 aa11.76□□□□□ -0.53
SMG1-208ENST00000563448 PICK1Q9NRD5 415 aa11.76□□□□□ -0.53
SMG1-208ENST00000563448 BMP3P12645 472 aa11.76□□□□□ -0.53
SMG1-208ENST00000563448 SCG2P13521 617 aa11.76□□□□□ -0.53
SMG1-208ENST00000563448 IREB2P48200 963 aaKnown RBP11.76□□□□□ -0.53
SMG1-208ENST00000563448 RESTQ13127 1097 aa11.76□□□□□ -0.53
SMG1-208ENST00000563448 ADGRF4Q8IZF3 695 aa11.76□□□□□ -0.53
SMG1-208ENST00000563448 CHAMP1Q96JM3 812 aa11.76□□□□□ -0.53
SMG1-208ENST00000563448 PIGSQ96S52 555 aa11.76□□□□□ -0.53
SMG1-208ENST00000563448 KIAA1683Q9H0B3 1180 aa11.76□□□□□ -0.53
SMG1-208ENST00000563448 JMJD4Q9H9V9 463 aa11.76□□□□□ -0.53
SMG1-208ENST00000563448 AS3MTQ9HBK9 375 aa11.76□□□□□ -0.53
SMG1-208ENST00000563448 VPS54Q9P1Q0 977 aa11.76□□□□□ -0.53
SMG1-208ENST00000563448 RBM27Q9P2N5 1060 aaKnown RBP11.76□□□□□ -0.53
SMG1-208ENST00000563448 USP17L10C9JJH3 530 aa11.75□□□□□ -0.53
SMG1-208ENST00000563448 SPP2Q13103 211 aa11.75□□□□□ -0.53
SMG1-208ENST00000563448 DGKZQ13574 1117 aa11.75□□□□□ -0.53
SMG1-208ENST00000563448 FAM83BQ5T0W9 1011 aa11.75□□□□□ -0.53
SMG1-208ENST00000563448 CLEC17AQ6ZS10 378 aa11.75□□□□□ -0.53
SMG1-208ENST00000563448 ZNF280CQ8ND82 737 aa11.75□□□□□ -0.53
SMG1-208ENST00000563448 FEZ1Q99689 392 aa11.75□□□□□ -0.53
SMG1-208ENST00000563448 ISY1Q9ULR0 285 aaKnown RBP11.75□□□□□ -0.53
SMG1-208ENST00000563448 KCNJ14Q9UNX9 436 aa11.75□□□□□ -0.53
SMG1-208ENST00000563448 ZHX2Q9Y6X8 837 aa11.75□□□□□ -0.53
SMG1-208ENST00000563448 TMEM232C9JQI7 657 aa11.74□□□□□ -0.53
SMG1-208ENST00000563448 BAG4O95429 457 aaKnown RBP11.74□□□□□ -0.53
SMG1-208ENST00000563448 MTMR2Q13614 643 aa11.74□□□□□ -0.53
SMG1-208ENST00000563448 TRIM29Q14134 588 aa11.74□□□□□ -0.53
SMG1-208ENST00000563448 TTLL12Q14166 644 aaPredicted RBP11.74□□□□□ -0.53
SMG1-208ENST00000563448 BTNL9Q6UXG8 535 aa11.74□□□□□ -0.53
SMG1-208ENST00000563448 GPKOWQ92917 476 aaPredicted RBP eCLIP11.74□□□□□ -0.53
SMG1-208ENST00000563448 MTMR8Q96EF0 704 aa11.74□□□□□ -0.53
SMG1-208ENST00000563448 RRP36Q96EU6 259 aaKnown RBP11.74□□□□□ -0.53
SMG1-208ENST00000563448 KIF28PB7ZC32 967 aa11.74□□□□□ -0.53
SMG1-208ENST00000563448 MMP1P03956 469 aa11.74□□□□□ -0.53
SMG1-208ENST00000563448 BACE1P56817 501 aa11.74□□□□□ -0.53
SMG1-208ENST00000563448 FOXD4L6Q3SYB3 417 aaPredicted RBP11.74□□□□□ -0.53
SMG1-208ENST00000563448 WWC2Q6AWC2 1192 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms