RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 NPLOC4Q8TAT6 608 aa12.28□□□□□ -0.44
CLK3-205ENST00000561673 EVI5LQ96CN4 794 aa12.28□□□□□ -0.44
CLK3-205ENST00000561673 NACAP1Q9BZK3 213 aa12.28□□□□□ -0.44
CLK3-205ENST00000561673 RNF39Q9H2S5 420 aa12.28□□□□□ -0.44
CLK3-205ENST00000561673 FBXO28Q9NVF7 368 aa12.28□□□□□ -0.44
CLK3-205ENST00000561673 NYAP2Q9P242 653 aa12.28□□□□□ -0.44
CLK3-205ENST00000561673 OGDHLQ9ULD0 1010 aa12.28□□□□□ -0.44
CLK3-205ENST00000561673 ADAMTS5Q9UNA0 930 aa12.28□□□□□ -0.44
CLK3-205ENST00000561673 COLQQ9Y215 455 aaPredicted RBP12.28□□□□□ -0.44
CLK3-205ENST00000561673 IGKV6D-41A0A0C4DH26 115 aa12.27□□□□□ -0.45
CLK3-205ENST00000561673 ADORA2AP29274 412 aa12.27□□□□□ -0.45
CLK3-205ENST00000561673 CACNB1Q02641 598 aaPredicted RBP12.27□□□□□ -0.45
CLK3-205ENST00000561673 FAM83BQ5T0W9 1011 aa12.27□□□□□ -0.45
CLK3-205ENST00000561673 MFSD14CQ5VZR4 134 aa12.27□□□□□ -0.45
CLK3-205ENST00000561673 LHX8Q68G74 356 aa12.27□□□□□ -0.45
CLK3-205ENST00000561673 DPP9Q86TI2 863 aa12.27□□□□□ -0.45
CLK3-205ENST00000561673 NCAPG2Q86XI2 1143 aa12.27□□□□□ -0.45
CLK3-205ENST00000561673 LNPKQ9C0E8 428 aa12.27□□□□□ -0.45
CLK3-205ENST00000561673 NAPBQ9H115 298 aa12.27□□□□□ -0.45
CLK3-205ENST00000561673 RWDD1Q9H446 243 aaPredicted RBP12.27□□□□□ -0.45
CLK3-205ENST00000561673 ZNF287Q9HBT7 754 aa12.27□□□□□ -0.45
CLK3-205ENST00000561673 CLIP2Q9UDT6 1046 aa12.27□□□□□ -0.45
CLK3-205ENST00000561673 F5H6K3 240 aa12.26□□□□□ -0.45
CLK3-205ENST00000561673 VWA5AO00534 786 aa12.26□□□□□ -0.45
CLK3-205ENST00000561673 FOXP2O15409 715 aa12.26□□□□□ -0.45
CLK3-205ENST00000561673 COBLO75128 1261 aa12.26□□□□□ -0.45
CLK3-205ENST00000561673 IGHA2P01877 340 aa12.26□□□□□ -0.45
CLK3-205ENST00000561673 IGHDP01880 384 aa12.26□□□□□ -0.45
CLK3-205ENST00000561673 KLRC3Q07444 240 aa12.26□□□□□ -0.45
CLK3-205ENST00000561673 PPARAQ07869 468 aa12.26□□□□□ -0.45
CLK3-205ENST00000561673 FAM47AQ5JRC9 791 aa12.26□□□□□ -0.45
CLK3-205ENST00000561673 B4GALNT3Q6L9W6 998 aa12.26□□□□□ -0.45
CLK3-205ENST00000561673 EXOC6Q8TAG9 804 aa12.26□□□□□ -0.45
CLK3-205ENST00000561673 MKL1Q969V6 931 aa12.26□□□□□ -0.45
CLK3-205ENST00000561673 CEP95Q96GE4 821 aa12.26□□□□□ -0.45
CLK3-205ENST00000561673 NUP88Q99567 741 aaPredicted RBP12.26□□□□□ -0.45
CLK3-205ENST00000561673 NBPF3Q9H094 633 aa12.26□□□□□ -0.45
CLK3-205ENST00000561673 MROH8Q9H579 483 aa12.26□□□□□ -0.45
CLK3-205ENST00000561673 MTMR4Q9NYA4 1195 aa12.26□□□□□ -0.45
CLK3-205ENST00000561673 PPP1R9AQ9ULJ8 1098 aa12.26□□□□□ -0.45
CLK3-205ENST00000561673 NR2E3Q9Y5X4 410 aa12.26□□□□□ -0.45
CLK3-205ENST00000561673 SZT2Q5T011 3432 aa12.26□□□□□ -0.45
CLK3-205ENST00000561673 RLFQ13129 1914 aa12.25□□□□□ -0.45
CLK3-205ENST00000561673 EVI5O60447 810 aa12.25□□□□□ -0.45
CLK3-205ENST00000561673 SLC25A27O95847 323 aa12.25□□□□□ -0.45
CLK3-205ENST00000561673 NDUFB10O96000 172 aa12.25□□□□□ -0.45
CLK3-205ENST00000561673 SLC3A2P08195 630 aaKnown RBP12.25□□□□□ -0.45
CLK3-205ENST00000561673 CYP2C19P33261 490 aa12.25□□□□□ -0.45
CLK3-205ENST00000561673 VASPP50552 380 aaPredicted RBP12.25□□□□□ -0.45
CLK3-205ENST00000561673 PDE4BQ07343 736 aa12.25□□□□□ -0.45
CLK3-205ENST00000561673 VPS53Q5VIR6 699 aa12.25□□□□□ -0.45
CLK3-205ENST00000561673 CHRDL2Q6WN34 429 aa12.25□□□□□ -0.45
CLK3-205ENST00000561673 SMC5Q8IY18 1101 aa12.25□□□□□ -0.45
CLK3-205ENST00000561673 ABRAQ8N0Z2 381 aa12.25□□□□□ -0.45
CLK3-205ENST00000561673 TRPV1Q8NER1 839 aa12.25□□□□□ -0.45
CLK3-205ENST00000561673 REPS2Q8NFH8 660 aa12.25□□□□□ -0.45
CLK3-205ENST00000561673 INCENPQ9NQS7 918 aa12.25□□□□□ -0.45
CLK3-205ENST00000561673 TTLL1O95922 423 aa12.24□□□□□ -0.45
CLK3-205ENST00000561673 TSPY3P0CV98 308 aa12.24□□□□□ -0.45
CLK3-205ENST00000561673 TSPY8P0CW00 308 aa12.24□□□□□ -0.45
CLK3-205ENST00000561673 FCER1AP12319 257 aa12.24□□□□□ -0.45
CLK3-205ENST00000561673 MYH8P13535 1937 aa12.24□□□□□ -0.45
CLK3-205ENST00000561673 CNGA1P29973 690 aa12.24□□□□□ -0.45
CLK3-205ENST00000561673 STAT3P40763 770 aa12.24□□□□□ -0.45
CLK3-205ENST00000561673 TFAP4Q01664 338 aa12.24□□□□□ -0.45
CLK3-205ENST00000561673 CTDSPL2Q05D32 466 aa12.24□□□□□ -0.45
CLK3-205ENST00000561673 OLFML2BQ68BL8 750 aa12.24□□□□□ -0.45
CLK3-205ENST00000561673 RIOX2Q8IUF8 465 aa12.24□□□□□ -0.45
CLK3-205ENST00000561673 NEDD1Q8NHV4 660 aa12.24□□□□□ -0.45
CLK3-205ENST00000561673 FAM227BQ96M60 508 aa12.24□□□□□ -0.45
CLK3-205ENST00000561673 SLF1Q9BQI6 1058 aa12.24□□□□□ -0.45
CLK3-205ENST00000561673 C11orf49Q9H6J7 331 aa12.24□□□□□ -0.45
CLK3-205ENST00000561673 HELLSQ9NRZ9 838 aa12.24□□□□□ -0.45
CLK3-205ENST00000561673 ZNF214Q9UL59 606 aaPredicted RBP12.24□□□□□ -0.45
CLK3-205ENST00000561673 A0A0D9SFI3 127 aa12.23□□□□□ -0.45
CLK3-205ENST00000561673 NUCB1Q02818 461 aa12.23□□□□□ -0.45
CLK3-205ENST00000561673 MCMDC2Q4G0Z9 681 aa12.23□□□□□ -0.45
CLK3-205ENST00000561673 CHD1LQ86WJ1 897 aa12.23□□□□□ -0.45
CLK3-205ENST00000561673 LRRC47Q8N1G4 583 aaKnown RBP12.23□□□□□ -0.45
CLK3-205ENST00000561673 PRPF38AQ8NAV1 312 aaKnown RBP12.23□□□□□ -0.45
CLK3-205ENST00000561673 SLC5A4Q9NY91 659 aa12.23□□□□□ -0.45
CLK3-205ENST00000561673 RBM27Q9P2N5 1060 aaKnown RBP12.23□□□□□ -0.45
CLK3-205ENST00000561673 DDX20Q9UHI6 824 aaKnown RBP12.23□□□□□ -0.45
CLK3-205ENST00000561673 TACC3Q9Y6A5 838 aa12.23□□□□□ -0.45
CLK3-205ENST00000561673 CEP290O15078 2479 aa12.23□□□□□ -0.45
CLK3-205ENST00000561673 A0A0G2JMZ2 1700 aa12.23□□□□□ -0.45
CLK3-205ENST00000561673 PLIN4Q96Q06 1357 aa12.22□□□□□ -0.45
CLK3-205ENST00000561673 LAMA3Q16787 3333 aa12.22□□□□□ -0.45
CLK3-205ENST00000561673 PFASO15067 1338 aa12.22□□□□□ -0.45
CLK3-205ENST00000561673 GREB1LQ9C091 1923 aaPredicted RBP12.22□□□□□ -0.45
CLK3-205ENST00000561673 TRIM6-TRIM34B2RNG4 842 aa12.22□□□□□ -0.45
CLK3-205ENST00000561673 PGK2P07205 417 aa12.22□□□□□ -0.45
CLK3-205ENST00000561673 COL6A1P12109 1028 aa12.22□□□□□ -0.45
CLK3-205ENST00000561673 CYBAP13498 195 aa12.22□□□□□ -0.45
CLK3-205ENST00000561673 FXR1P51114 621 aaKnown RBP eCLIP12.22□□□□□ -0.45
CLK3-205ENST00000561673 ALX1Q15699 326 aa12.22□□□□□ -0.45
CLK3-205ENST00000561673 TICAM2Q86XR7 235 aa12.22□□□□□ -0.45
CLK3-205ENST00000561673 PLEKHM2Q8IWE5 1019 aa12.22□□□□□ -0.45
CLK3-205ENST00000561673 GMCL1P1Q8NEA9 526 aa12.22□□□□□ -0.45
CLK3-205ENST00000561673 RILPL2Q969X0 211 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms