RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 FBXO28Q9NVF7 368 aa19.4■□□□□ 0.7
SNX1-213ENST00000561026 ROBO3Q96MS0 1386 aa19.4■□□□□ 0.7
SNX1-213ENST00000561026 A0A0G2JMZ2 1700 aa19.4■□□□□ 0.7
SNX1-213ENST00000561026 PATL2C9JE40 543 aaKnown RBP19.39■□□□□ 0.69
SNX1-213ENST00000561026 M0R2C6 588 aa19.39■□□□□ 0.69
SNX1-213ENST00000561026 RAD21O60216 631 aa19.39■□□□□ 0.69
SNX1-213ENST00000561026 SLC25A27O95847 323 aa19.39■□□□□ 0.69
SNX1-213ENST00000561026 APPP05067 770 aa19.39■□□□□ 0.69
SNX1-213ENST00000561026 TDO2P48775 406 aa19.39■□□□□ 0.69
SNX1-213ENST00000561026 RRP1P56182 461 aaKnown RBP19.39■□□□□ 0.69
SNX1-213ENST00000561026 TRPV1Q8NER1 839 aa19.39■□□□□ 0.69
SNX1-213ENST00000561026 SLC5A4Q9NY91 659 aa19.39■□□□□ 0.69
SNX1-213ENST00000561026 ZMYND8Q9ULU4 1186 aaPredicted RBP19.39■□□□□ 0.69
SNX1-213ENST00000561026 VWA5AO00534 786 aa19.38■□□□□ 0.69
SNX1-213ENST00000561026 FCER1AP12319 257 aa19.38■□□□□ 0.69
SNX1-213ENST00000561026 CYBAP13498 195 aa19.38■□□□□ 0.69
SNX1-213ENST00000561026 FAM83BQ5T0W9 1011 aa19.38■□□□□ 0.69
SNX1-213ENST00000561026 GDF15Q99988 308 aa19.38■□□□□ 0.69
SNX1-213ENST00000561026 ZNF287Q9HBT7 754 aa19.38■□□□□ 0.69
SNX1-213ENST00000561026 NYAP2Q9P242 653 aa19.38■□□□□ 0.69
SNX1-213ENST00000561026 PPP1R9AQ9ULJ8 1098 aa19.38■□□□□ 0.69
SNX1-213ENST00000561026 DNAH12Q6ZR08 3092 aa19.37■□□□□ 0.69
SNX1-213ENST00000561026 BMP8BP34820 402 aa19.37■□□□□ 0.69
SNX1-213ENST00000561026 IFNL3Q8IZI9 196 aa19.37■□□□□ 0.69
SNX1-213ENST00000561026 ZNF236Q9UL36 1845 aa19.37■□□□□ 0.69
SNX1-213ENST00000561026 F5H6K3 240 aa19.36■□□□□ 0.69
SNX1-213ENST00000561026 SYN1P17600 705 aa19.36■□□□□ 0.69
SNX1-213ENST00000561026 MX1P20591 662 aa19.36■□□□□ 0.69
SNX1-213ENST00000561026 STAT3P40763 770 aa19.36■□□□□ 0.69
SNX1-213ENST00000561026 KLRC3Q07444 240 aa19.36■□□□□ 0.69
SNX1-213ENST00000561026 LRRC26Q2I0M4 334 aa19.36■□□□□ 0.69
SNX1-213ENST00000561026 RIOX2Q8IUF8 465 aa19.36■□□□□ 0.69
SNX1-213ENST00000561026 ZNF444Q8N0Y2 327 aaPredicted RBP19.36■□□□□ 0.69
SNX1-213ENST00000561026 SEC62Q99442 399 aaKnown RBP19.36■□□□□ 0.69
SNX1-213ENST00000561026 FSD1Q9BTV5 496 aa19.36■□□□□ 0.69
SNX1-213ENST00000561026 NACAP1Q9BZK3 213 aa19.36■□□□□ 0.69
SNX1-213ENST00000561026 IGKV6D-41A0A0C4DH26 115 aa19.35■□□□□ 0.69
SNX1-213ENST00000561026 PRDM1O75626 825 aa19.35■□□□□ 0.69
SNX1-213ENST00000561026 ZMYM1Q5SVZ6 1142 aa19.35■□□□□ 0.69
SNX1-213ENST00000561026 REPS2Q8NFH8 660 aa19.35■□□□□ 0.69
SNX1-213ENST00000561026 MAML3Q96JK9 1138 aa19.35■□□□□ 0.69
SNX1-213ENST00000561026 NUP88Q99567 741 aaPredicted RBP19.35■□□□□ 0.69
SNX1-213ENST00000561026 SENP6Q9GZR1 1112 aaPredicted RBP19.35■□□□□ 0.69
SNX1-213ENST00000561026 CLIP2Q9UDT6 1046 aa19.35■□□□□ 0.69
SNX1-213ENST00000561026 ZNF214Q9UL59 606 aaPredicted RBP19.35■□□□□ 0.69
SNX1-213ENST00000561026 GREB1LQ9C091 1923 aaPredicted RBP19.35■□□□□ 0.69
SNX1-213ENST00000561026 PARP14Q460N5 1801 aa19.34■□□□□ 0.69
SNX1-213ENST00000561026 DNM1LO00429 736 aa19.34■□□□□ 0.69
SNX1-213ENST00000561026 SEPT4O43236 478 aa19.34■□□□□ 0.69
SNX1-213ENST00000561026 NDUFB10O96000 172 aa19.34■□□□□ 0.69
SNX1-213ENST00000561026 MKL1Q969V6 931 aa19.34■□□□□ 0.69
SNX1-213ENST00000561026 MMP19Q99542 508 aa19.34■□□□□ 0.69
SNX1-213ENST00000561026 SLF1Q9BQI6 1058 aa19.34■□□□□ 0.69
SNX1-213ENST00000561026 SALL3Q9BXA9 1300 aa19.34■□□□□ 0.69
SNX1-213ENST00000561026 COPB2P35606 906 aa19.33■□□□□ 0.69
SNX1-213ENST00000561026 MAGEA10P43363 369 aaPredicted RBP19.33■□□□□ 0.69
SNX1-213ENST00000561026 PRAMEF19Q5SWL8 479 aa19.33■□□□□ 0.69
SNX1-213ENST00000561026 ANKRD45Q5TZF3 282 aa19.33■□□□□ 0.69
SNX1-213ENST00000561026 CEP95Q96GE4 821 aa19.33■□□□□ 0.69
SNX1-213ENST00000561026 CRBNQ96SW2 442 aa19.33■□□□□ 0.69
SNX1-213ENST00000561026 MTMR4Q9NYA4 1195 aa19.33■□□□□ 0.69
SNX1-213ENST00000561026 PGK2P07205 417 aa19.32■□□□□ 0.68
SNX1-213ENST00000561026 KCTD2Q14681 263 aa19.32■□□□□ 0.68
SNX1-213ENST00000561026 PRPF38AQ8NAV1 312 aaKnown RBP19.32■□□□□ 0.68
SNX1-213ENST00000561026 ARRDC4Q8NCT1 418 aa19.32■□□□□ 0.68
SNX1-213ENST00000561026 ZBTB47Q9UFB7 747 aaPredicted RBP19.32■□□□□ 0.68
SNX1-213ENST00000561026 SYNPO2Q9UMS6 1093 aa19.32■□□□□ 0.68
SNX1-213ENST00000561026 DIS3Q9Y2L1 958 aaKnown RBP19.32■□□□□ 0.68
SNX1-213ENST00000561026 TTLL1O95922 423 aa19.32■□□□□ 0.68
SNX1-213ENST00000561026 SLC3A2P08195 630 aaKnown RBP19.32■□□□□ 0.68
SNX1-213ENST00000561026 PDE4BQ07343 736 aa19.32■□□□□ 0.68
SNX1-213ENST00000561026 HDAC1Q13547 482 aaPredicted RBP19.32■□□□□ 0.68
SNX1-213ENST00000561026 ZNF792Q3KQV3 632 aa19.32■□□□□ 0.68
SNX1-213ENST00000561026 GJC2Q5T442 439 aaPredicted RBP19.32■□□□□ 0.68
SNX1-213ENST00000561026 ANO1Q5XXA6 986 aa19.32■□□□□ 0.68
SNX1-213ENST00000561026 NEDD1Q8NHV4 660 aa19.32■□□□□ 0.68
SNX1-213ENST00000561026 TEX13BQ9BXU2 312 aa19.32■□□□□ 0.68
SNX1-213ENST00000561026 NAPBQ9H115 298 aa19.32■□□□□ 0.68
SNX1-213ENST00000561026 FRMPD3Q5JV73 1810 aa19.31■□□□□ 0.68
SNX1-213ENST00000561026 SOX1O00570 391 aaPredicted RBP19.31■□□□□ 0.68
SNX1-213ENST00000561026 TSPY3P0CV98 308 aa19.31■□□□□ 0.68
SNX1-213ENST00000561026 TSPY8P0CW00 308 aa19.31■□□□□ 0.68
SNX1-213ENST00000561026 PPARAQ07869 468 aa19.31■□□□□ 0.68
SNX1-213ENST00000561026 NRBP1Q9UHY1 535 aa19.31■□□□□ 0.68
SNX1-213ENST00000561026 COL11A1P12107 1806 aaPredicted RBP19.31■□□□□ 0.68
SNX1-213ENST00000561026 ATP2A1O14983 1001 aa19.3■□□□□ 0.68
SNX1-213ENST00000561026 ATN1P54259 1190 aaPredicted RBP19.3■□□□□ 0.68
SNX1-213ENST00000561026 TFAP4Q01664 338 aa19.3■□□□□ 0.68
SNX1-213ENST00000561026 SNRNP48Q6IEG0 339 aaKnown RBP19.3■□□□□ 0.68
SNX1-213ENST00000561026 GMCL1P1Q8NEA9 526 aa19.3■□□□□ 0.68
SNX1-213ENST00000561026 TINF2Q9BSI4 451 aa19.3■□□□□ 0.68
SNX1-213ENST00000561026 RIPK3Q9Y572 518 aa19.3■□□□□ 0.68
SNX1-213ENST00000561026 PLIN4Q96Q06 1357 aa19.29■□□□□ 0.68
SNX1-213ENST00000561026 FOXP2O15409 715 aa19.29■□□□□ 0.68
SNX1-213ENST00000561026 FAM47AQ5JRC9 791 aa19.29■□□□□ 0.68
SNX1-213ENST00000561026 CCDC129Q6ZRS4 1044 aa19.29■□□□□ 0.68
SNX1-213ENST00000561026 LRRC47Q8N1G4 583 aaKnown RBP19.29■□□□□ 0.68
SNX1-213ENST00000561026 EVI5LQ96CN4 794 aa19.29■□□□□ 0.68
SNX1-213ENST00000561026 LRCH3Q96II8 777 aa19.29■□□□□ 0.68
SNX1-213ENST00000561026 UBE2OQ9C0C9 1292 aaKnown RBP19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms