RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 HSPA1BP0DMV9 641 aaKnown RBP25.55■■□□□ 1.68
SNX1-210ENST00000560260 SNHG28P0DPA3 235 aa25.55■■□□□ 1.68
SNX1-210ENST00000560260 PDHBP11177 359 aa25.55■■□□□ 1.68
SNX1-210ENST00000560260 PARK7Q99497 189 aaKnown RBP25.55■■□□□ 1.68
SNX1-210ENST00000560260 UPF3BQ9BZI7 483 aaKnown RBP25.55■■□□□ 1.68
SNX1-210ENST00000560260 TM6SF1Q9BZW5 370 aa25.55■■□□□ 1.68
SNX1-210ENST00000560260 TANGO6Q9C0B7 1094 aa25.55■■□□□ 1.68
SNX1-210ENST00000560260 FBXO28Q9NVF7 368 aa25.55■■□□□ 1.68
SNX1-210ENST00000560260 HMGB1P09429 215 aaKnown RBP25.54■■□□□ 1.68
SNX1-210ENST00000560260 PSMA5P28066 241 aa25.54■■□□□ 1.68
SNX1-210ENST00000560260 PABPC4Q13310 644 aaKnown RBP eCLIP25.54■■□□□ 1.68
SNX1-210ENST00000560260 SART3Q15020 963 aaKnown RBP25.54■■□□□ 1.68
SNX1-210ENST00000560260 P2RX7Q99572 595 aaKnown RBP25.54■■□□□ 1.68
SNX1-210ENST00000560260 ERICH2A1L162 156 aa25.53■■□□□ 1.68
SNX1-210ENST00000560260 BMP3P12645 472 aa25.53■■□□□ 1.68
SNX1-210ENST00000560260 OSBPP22059 807 aa25.53■■□□□ 1.68
SNX1-210ENST00000560260 IRX3P78415 501 aaPredicted RBP25.53■■□□□ 1.68
SNX1-210ENST00000560260 DCAF4Q8WV16 495 aa25.53■■□□□ 1.68
SNX1-210ENST00000560260 C22orf23Q9BZE7 217 aa25.53■■□□□ 1.68
SNX1-210ENST00000560260 SPDYE16A6NNV3 312 aaPredicted RBP25.52■■□□□ 1.68
SNX1-210ENST00000560260 FOXN1O15353 648 aa25.52■■□□□ 1.68
SNX1-210ENST00000560260 PEX10O60683 326 aa25.52■■□□□ 1.68
SNX1-210ENST00000560260 RBM25P49756 843 aaKnown RBP25.52■■□□□ 1.68
SNX1-210ENST00000560260 HERVK_113P62684 666 aa25.52■■□□□ 1.68
SNX1-210ENST00000560260 KCTD1Q719H9 257 aa25.52■■□□□ 1.68
SNX1-210ENST00000560260 RUFY3Q7L099 469 aa25.52■■□□□ 1.68
SNX1-210ENST00000560260 KIF2CQ99661 725 aa25.52■■□□□ 1.68
SNX1-210ENST00000560260 ZFYVE28Q9HCC9 887 aa25.52■■□□□ 1.68
SNX1-210ENST00000560260 PNMA3Q9UL41 463 aa25.52■■□□□ 1.68
SNX1-210ENST00000560260 FRMPD2Q68DX3 1309 aaPredicted RBP25.51■■□□□ 1.67
SNX1-210ENST00000560260 LIFRP42702 1097 aa25.51■■□□□ 1.67
SNX1-210ENST00000560260 SLC1A4P43007 532 aa25.51■■□□□ 1.67
SNX1-210ENST00000560260 Q6ZUG5 572 aa25.51■■□□□ 1.67
SNX1-210ENST00000560260 MYL10Q9BUA6 226 aa25.51■■□□□ 1.67
SNX1-210ENST00000560260 BEGAINQ9BUH8 593 aa25.51■■□□□ 1.67
SNX1-210ENST00000560260 TLR2O60603 784 aa25.5■■□□□ 1.67
SNX1-210ENST00000560260 FLOT1O75955 427 aa25.5■■□□□ 1.67
SNX1-210ENST00000560260 ZNF543Q08ER8 600 aa25.5■■□□□ 1.67
SNX1-210ENST00000560260 CCDC96Q2M329 555 aa25.5■■□□□ 1.67
SNX1-210ENST00000560260 TTBK2Q6IQ55 1244 aa25.5■■□□□ 1.67
SNX1-210ENST00000560260 SGMS1Q86VZ5 419 aa25.5■■□□□ 1.67
SNX1-210ENST00000560260 ATG4CQ96DT6 458 aa25.5■■□□□ 1.67
SNX1-210ENST00000560260 AGXT2Q9BYV1 514 aa25.5■■□□□ 1.67
SNX1-210ENST00000560260 CPA4Q9UI42 421 aa25.5■■□□□ 1.67
SNX1-210ENST00000560260 CYP46A1Q9Y6A2 500 aa25.5■■□□□ 1.67
SNX1-210ENST00000560260 GOLGA8HP0CJ92 632 aa25.49■■□□□ 1.67
SNX1-210ENST00000560260 TROAPQ12815 778 aa25.49■■□□□ 1.67
SNX1-210ENST00000560260 C17orf99Q6UX52 265 aa25.49■■□□□ 1.67
SNX1-210ENST00000560260 ZNF654Q8IZM8 581 aa25.49■■□□□ 1.67
SNX1-210ENST00000560260 SMCR8Q8TEV9 937 aaPredicted RBP25.49■■□□□ 1.67
SNX1-210ENST00000560260 PPP1R9AQ9ULJ8 1098 aa25.49■■□□□ 1.67
SNX1-210ENST00000560260 TMEM232C9JQI7 657 aa25.48■■□□□ 1.67
SNX1-210ENST00000560260 CNMDO75829 334 aa25.48■■□□□ 1.67
SNX1-210ENST00000560260 HSPA8P11142 646 aaKnown RBP25.48■■□□□ 1.67
SNX1-210ENST00000560260 BCRP11274 1271 aa25.48■■□□□ 1.67
SNX1-210ENST00000560260 DSG3P32926 999 aa25.48■■□□□ 1.67
SNX1-210ENST00000560260 SAMD1Q6SPF0 538 aaPredicted RBP25.48■■□□□ 1.67
SNX1-210ENST00000560260 RAB11FIP4Q86YS3 637 aa25.48■■□□□ 1.67
SNX1-210ENST00000560260 TBC1D32Q96NH3 1257 aa25.48■■□□□ 1.67
SNX1-210ENST00000560260 TXNRD2Q9NNW7 524 aa25.48■■□□□ 1.67
SNX1-210ENST00000560260 GPCPD1Q9NPB8 672 aa25.48■■□□□ 1.67
SNX1-210ENST00000560260 BRPF3Q9ULD4 1205 aa25.48■■□□□ 1.67
SNX1-210ENST00000560260 ISY1Q9ULR0 285 aaKnown RBP25.48■■□□□ 1.67
SNX1-210ENST00000560260 COL11A1P12107 1806 aaPredicted RBP25.48■■□□□ 1.67
SNX1-210ENST00000560260 MYPNQ86TC9 1320 aa25.47■■□□□ 1.67
SNX1-210ENST00000560260 ZSWIM8A7E2V4 1837 aa25.47■■□□□ 1.67
SNX1-210ENST00000560260 TOB2Q14106 344 aaPredicted RBP25.47■■□□□ 1.67
SNX1-210ENST00000560260 COG2Q14746 738 aa25.47■■□□□ 1.67
SNX1-210ENST00000560260 LBX2Q6XYB7 198 aa25.47■■□□□ 1.67
SNX1-210ENST00000560260 NFXL1Q6ZNB6 911 aa25.47■■□□□ 1.67
SNX1-210ENST00000560260 BRF1Q92994 677 aa25.47■■□□□ 1.67
SNX1-210ENST00000560260 SLF1Q9BQI6 1058 aa25.47■■□□□ 1.67
SNX1-210ENST00000560260 CPVLQ9H3G5 476 aa25.47■■□□□ 1.67
SNX1-210ENST00000560260 FEM1BQ9UK73 627 aa25.47■■□□□ 1.67
SNX1-210ENST00000560260 CCDC69A6NI79 296 aa25.46■■□□□ 1.67
SNX1-210ENST00000560260 RXRAP19793 462 aa25.46■■□□□ 1.67
SNX1-210ENST00000560260 SLC16A2P36021 539 aa25.46■■□□□ 1.67
SNX1-210ENST00000560260 GRM4Q14833 912 aa25.46■■□□□ 1.67
SNX1-210ENST00000560260 CATIPQ7Z7H3 387 aa25.46■■□□□ 1.67
SNX1-210ENST00000560260 STAG2Q8N3U4 1231 aa25.46■■□□□ 1.67
SNX1-210ENST00000560260 FBXL16Q8N461 479 aa25.46■■□□□ 1.67
SNX1-210ENST00000560260 UPF2Q9HAU5 1272 aaKnown RBP25.46■■□□□ 1.67
SNX1-210ENST00000560260 BTBD7Q9P203 1132 aa25.46■■□□□ 1.67
SNX1-210ENST00000560260 RBPJLQ9UBG7 517 aa25.46■■□□□ 1.67
SNX1-210ENST00000560260 ADAMTS5Q9UNA0 930 aa25.46■■□□□ 1.67
SNX1-210ENST00000560260 GPR25O00155 361 aa25.45■■□□□ 1.66
SNX1-210ENST00000560260 PLA2G6O60733 806 aa25.45■■□□□ 1.66
SNX1-210ENST00000560260 DDAH1O94760 285 aa25.45■■□□□ 1.66
SNX1-210ENST00000560260 APOBRQ0VD83 1088 aa25.45■■□□□ 1.66
SNX1-210ENST00000560260 APOA5Q6Q788 366 aa25.45■■□□□ 1.66
SNX1-210ENST00000560260 BTNL9Q6UXG8 535 aa25.45■■□□□ 1.66
SNX1-210ENST00000560260 TMTC2Q8N394 836 aa25.45■■□□□ 1.66
SNX1-210ENST00000560260 ANKRD13CQ8N6S4 541 aa25.45■■□□□ 1.66
SNX1-210ENST00000560260 REPS2Q8NFH8 660 aa25.45■■□□□ 1.66
SNX1-210ENST00000560260 PDRG1Q9NUG6 133 aa25.45■■□□□ 1.66
SNX1-210ENST00000560260 MAD2L2Q9UI95 211 aa25.45■■□□□ 1.66
SNX1-210ENST00000560260 KLF18A0A0U1RQI7 1052 aa25.44■■□□□ 1.66
SNX1-210ENST00000560260 GCLCP48506 637 aaPredicted RBP25.44■■□□□ 1.66
SNX1-210ENST00000560260 STAT2P52630 851 aa25.44■■□□□ 1.66
SNX1-210ENST00000560260 CAP1Q01518 475 aa25.44■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms