RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 GPATCH4Q5T3I0 446 aaKnown RBP12.99□□□□□ -0.33
USP3-218ENST00000560202 USP48Q86UV5 1035 aa12.99□□□□□ -0.33
USP3-218ENST00000560202 FERMT3Q86UX7 667 aa12.99□□□□□ -0.33
USP3-218ENST00000560202 KLRG1Q96E93 195 aa12.99□□□□□ -0.33
USP3-218ENST00000560202 WRNIP1Q96S55 665 aa12.99□□□□□ -0.33
USP3-218ENST00000560202 SPZ1Q9BXG8 430 aa12.99□□□□□ -0.33
USP3-218ENST00000560202 GPCPD1Q9NPB8 672 aa12.99□□□□□ -0.33
USP3-218ENST00000560202 FZD1Q9UP38 647 aa12.99□□□□□ -0.33
USP3-218ENST00000560202 NDUFB10O96000 172 aa12.98□□□□□ -0.33
USP3-218ENST00000560202 SLC1A4P43007 532 aa12.98□□□□□ -0.33
USP3-218ENST00000560202 CCDC96Q2M329 555 aa12.98□□□□□ -0.33
USP3-218ENST00000560202 KRT40Q6A162 431 aa12.98□□□□□ -0.33
USP3-218ENST00000560202 CCDC84Q86UT8 332 aaPredicted RBP12.98□□□□□ -0.33
USP3-218ENST00000560202 SCYL3Q8IZE3 742 aa12.98□□□□□ -0.33
USP3-218ENST00000560202 PIBF1Q8WXW3 757 aa12.98□□□□□ -0.33
USP3-218ENST00000560202 GMCL1Q96IK5 515 aa12.98□□□□□ -0.33
USP3-218ENST00000560202 UBA5Q9GZZ9 404 aa12.98□□□□□ -0.33
USP3-218ENST00000560202 CPVLQ9H3G5 476 aa12.98□□□□□ -0.33
USP3-218ENST00000560202 SH2D4AQ9H788 454 aa12.98□□□□□ -0.33
USP3-218ENST00000560202 RTN4Q9NQC3 1192 aaKnown RBP12.98□□□□□ -0.33
USP3-218ENST00000560202 ATP6V1DQ9Y5K8 247 aa12.98□□□□□ -0.33
USP3-218ENST00000560202 USP2O75604 605 aaPredicted RBP12.97□□□□□ -0.33
USP3-218ENST00000560202 SCG2P13521 617 aa12.97□□□□□ -0.33
USP3-218ENST00000560202 VEGFAP15692 232 aaPredicted RBP12.97□□□□□ -0.33
USP3-218ENST00000560202 RESTQ13127 1097 aa12.97□□□□□ -0.33
USP3-218ENST00000560202 PRKG1Q13976 671 aa12.97□□□□□ -0.33
USP3-218ENST00000560202 PFKFB3Q16875 520 aaPredicted RBP12.97□□□□□ -0.33
USP3-218ENST00000560202 FOXD4L6Q3SYB3 417 aaPredicted RBP12.97□□□□□ -0.33
USP3-218ENST00000560202 MCTP1Q6DN14 999 aa12.97□□□□□ -0.33
USP3-218ENST00000560202 FOXD4L3Q6VB84 417 aaPredicted RBP12.97□□□□□ -0.33
USP3-218ENST00000560202 KCTD1Q719H9 257 aa12.97□□□□□ -0.33
USP3-218ENST00000560202 ZKSCAN4Q969J2 545 aaPredicted RBP12.97□□□□□ -0.33
USP3-218ENST00000560202 CDCA5Q96FF9 252 aa12.97□□□□□ -0.33
USP3-218ENST00000560202 GLIS2Q9BZE0 524 aaPredicted RBP12.97□□□□□ -0.33
USP3-218ENST00000560202 ZSCAN16Q9H4T2 348 aaPredicted RBP12.97□□□□□ -0.33
USP3-218ENST00000560202 RIOX1Q9H6W3 641 aa12.97□□□□□ -0.33
USP3-218ENST00000560202 RRAGCQ9HB90 399 aa12.97□□□□□ -0.33
USP3-218ENST00000560202 GOPCQ9HD26 462 aa12.97□□□□□ -0.33
USP3-218ENST00000560202 CLEC11AQ9Y240 323 aa12.97□□□□□ -0.33
USP3-218ENST00000560202 PPP1R12BO60237 982 aaPredicted RBP12.96□□□□□ -0.33
USP3-218ENST00000560202 XBP1P17861 261 aa12.96□□□□□ -0.33
USP3-218ENST00000560202 MCM4P33991 863 aa12.96□□□□□ -0.33
USP3-218ENST00000560202 TTBK2Q6IQ55 1244 aa12.96□□□□□ -0.33
USP3-218ENST00000560202 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.96□□□□□ -0.33
USP3-218ENST00000560202 CHAMP1Q96JM3 812 aa12.96□□□□□ -0.33
USP3-218ENST00000560202 VCPKMTQ9H867 229 aa12.96□□□□□ -0.33
USP3-218ENST00000560202 VAT1LQ9HCJ6 419 aa12.96□□□□□ -0.33
USP3-218ENST00000560202 PICK1Q9NRD5 415 aa12.96□□□□□ -0.33
USP3-218ENST00000560202 ISY1Q9ULR0 285 aaKnown RBP12.96□□□□□ -0.33
USP3-218ENST00000560202 POTEIP0CG38 1075 aa12.96□□□□□ -0.34
USP3-218ENST00000560202 POTEJP0CG39 1038 aa12.96□□□□□ -0.34
USP3-218ENST00000560202 BMP3P12645 472 aa12.96□□□□□ -0.34
USP3-218ENST00000560202 NF2P35240 595 aa12.96□□□□□ -0.34
USP3-218ENST00000560202 SLC16A2P36021 539 aa12.96□□□□□ -0.34
USP3-218ENST00000560202 MAPK8IP2Q13387 824 aaPredicted RBP12.96□□□□□ -0.34
USP3-218ENST00000560202 KIAA1755Q5JYT7 1200 aa12.96□□□□□ -0.34
USP3-218ENST00000560202 NOL9Q5SY16 702 aaKnown RBP12.96□□□□□ -0.34
USP3-218ENST00000560202 SPICE1Q8N0Z3 855 aa12.96□□□□□ -0.34
USP3-218ENST00000560202 RRP36Q96EU6 259 aaKnown RBP12.96□□□□□ -0.34
USP3-218ENST00000560202 NUP88Q99567 741 aaPredicted RBP12.96□□□□□ -0.34
USP3-218ENST00000560202 FEZ1Q99689 392 aa12.96□□□□□ -0.34
USP3-218ENST00000560202 VPS54Q9P1Q0 977 aa12.96□□□□□ -0.34
USP3-218ENST00000560202 KCNJ14Q9UNX9 436 aa12.96□□□□□ -0.34
USP3-218ENST00000560202 MYH4Q9Y623 1939 aa12.95□□□□□ -0.34
USP3-218ENST00000560202 MMP1P03956 469 aa12.95□□□□□ -0.34
USP3-218ENST00000560202 PTPRAP18433 802 aa12.95□□□□□ -0.34
USP3-218ENST00000560202 MAP3K9P80192 1104 aa12.95□□□□□ -0.34
USP3-218ENST00000560202 KIF23Q02241 960 aaPredicted RBP12.95□□□□□ -0.34
USP3-218ENST00000560202 ZYXQ15942 572 aaKnown RBP12.95□□□□□ -0.34
USP3-218ENST00000560202 FAM173BQ6P4H8 233 aa12.95□□□□□ -0.34
USP3-218ENST00000560202 HOMER1Q86YM7 354 aa12.95□□□□□ -0.34
USP3-218ENST00000560202 ADGRF4Q8IZF3 695 aa12.95□□□□□ -0.34
USP3-218ENST00000560202 SHISA4Q96DD7 197 aa12.95□□□□□ -0.34
USP3-218ENST00000560202 PIGSQ96S52 555 aa12.95□□□□□ -0.34
USP3-218ENST00000560202 WDR18Q9BV38 432 aa12.95□□□□□ -0.34
USP3-218ENST00000560202 KIAA1683Q9H0B3 1180 aa12.95□□□□□ -0.34
USP3-218ENST00000560202 JMJD4Q9H9V9 463 aa12.95□□□□□ -0.34
USP3-218ENST00000560202 DNM1Q05193 864 aaKnown RBP12.94□□□□□ -0.34
USP3-218ENST00000560202 SAFBQ15424 915 aaKnown RBP eCLIP12.94□□□□□ -0.34
USP3-218ENST00000560202 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.94□□□□□ -0.34
USP3-218ENST00000560202 PHF20Q9BVI0 1012 aa12.94□□□□□ -0.34
USP3-218ENST00000560202 AS3MTQ9HBK9 375 aa12.94□□□□□ -0.34
USP3-218ENST00000560202 SH3GLB2Q9NR46 395 aa12.94□□□□□ -0.34
USP3-218ENST00000560202 SEC63Q9UGP8 760 aaKnown RBP12.94□□□□□ -0.34
USP3-218ENST00000560202 POLR2AP24928 1970 aaKnown RBP12.93□□□□□ -0.34
USP3-218ENST00000560202 KIF28PB7ZC32 967 aa12.93□□□□□ -0.34
USP3-218ENST00000560202 USP17L10C9JJH3 530 aa12.93□□□□□ -0.34
USP3-218ENST00000560202 TMEM232C9JQI7 657 aa12.93□□□□□ -0.34
USP3-218ENST00000560202 GOLGA6L22H0YM25 854 aa12.93□□□□□ -0.34
USP3-218ENST00000560202 IREB2P48200 963 aaKnown RBP12.93□□□□□ -0.34
USP3-218ENST00000560202 SPP2Q13103 211 aa12.93□□□□□ -0.34
USP3-218ENST00000560202 FAM83BQ5T0W9 1011 aa12.93□□□□□ -0.34
USP3-218ENST00000560202 MAP1SQ66K74 1059 aaPredicted RBP12.93□□□□□ -0.34
USP3-218ENST00000560202 WWC2Q6AWC2 1192 aa12.93□□□□□ -0.34
USP3-218ENST00000560202 BTNL9Q6UXG8 535 aa12.93□□□□□ -0.34
USP3-218ENST00000560202 HEATR3Q7Z4Q2 680 aa12.93□□□□□ -0.34
USP3-218ENST00000560202 BRAPQ7Z569 592 aa12.93□□□□□ -0.34
USP3-218ENST00000560202 DIS3L2Q8IYB7 885 aaKnown RBP12.93□□□□□ -0.34
USP3-218ENST00000560202 GPKOWQ92917 476 aaPredicted RBP eCLIP12.93□□□□□ -0.34
USP3-218ENST00000560202 MTMR8Q96EF0 704 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms