RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 LRRC47Q8N1G4 583 aaKnown RBP14.59□□□□□ -0.07
USP3-213ENST00000559711 MRPS27Q92552 414 aaKnown RBP14.59□□□□□ -0.07
USP3-213ENST00000559711 TSPY26PQ9H489 355 aa14.59□□□□□ -0.07
USP3-213ENST00000559711 CABP5Q9NP86 173 aa14.59□□□□□ -0.07
USP3-213ENST00000559711 BARHL2Q9NY43 387 aa14.59□□□□□ -0.07
USP3-213ENST00000559711 WNT10BO00744 389 aa14.58□□□□□ -0.07
USP3-213ENST00000559711 CMA1P23946 247 aa14.58□□□□□ -0.07
USP3-213ENST00000559711 PRELPP51888 382 aa14.58□□□□□ -0.07
USP3-213ENST00000559711 EIF6P56537 245 aaKnown RBP14.58□□□□□ -0.07
USP3-213ENST00000559711 FAM160A1Q05DH4 1040 aa14.58□□□□□ -0.07
USP3-213ENST00000559711 ZNF543Q08ER8 600 aa14.58□□□□□ -0.07
USP3-213ENST00000559711 GALNT17Q6IS24 598 aa14.58□□□□□ -0.07
USP3-213ENST00000559711 CCDC73Q6ZRK6 1079 aa14.58□□□□□ -0.07
USP3-213ENST00000559711 FSIP1Q8NA03 581 aa14.58□□□□□ -0.07
USP3-213ENST00000559711 PIBF1Q8WXW3 757 aa14.58□□□□□ -0.07
USP3-213ENST00000559711 DPF2Q92785 391 aa14.58□□□□□ -0.07
USP3-213ENST00000559711 FUCA2Q9BTY2 467 aa14.58□□□□□ -0.07
USP3-213ENST00000559711 RBSNQ9H1K0 784 aa14.58□□□□□ -0.07
USP3-213ENST00000559711 SPON1Q9HCB6 807 aa14.58□□□□□ -0.07
USP3-213ENST00000559711 MYOZ2Q9NPC6 264 aa14.58□□□□□ -0.07
USP3-213ENST00000559711 MYH15Q9Y2K3 1946 aa14.58□□□□□ -0.08
USP3-213ENST00000559711 MYO1BO43795 1136 aa14.58□□□□□ -0.08
USP3-213ENST00000559711 RASSF7Q02833 373 aa14.58□□□□□ -0.08
USP3-213ENST00000559711 ABCB5Q2M3G0 1257 aa14.58□□□□□ -0.08
USP3-213ENST00000559711 EARS2Q5JPH6 523 aaKnown RBP14.58□□□□□ -0.08
USP3-213ENST00000559711 WWC2Q6AWC2 1192 aa14.58□□□□□ -0.08
USP3-213ENST00000559711 SIAH1Q8IUQ4 282 aa14.58□□□□□ -0.08
USP3-213ENST00000559711 DAGLBQ8NCG7 672 aa14.58□□□□□ -0.08
USP3-213ENST00000559711 RRP36Q96EU6 259 aaKnown RBP14.58□□□□□ -0.08
USP3-213ENST00000559711 SIPA1L1O43166 1804 aa14.57□□□□□ -0.08
USP3-213ENST00000559711 STXBP3O00186 592 aa14.57□□□□□ -0.08
USP3-213ENST00000559711 TBC1D12O60347 775 aa14.57□□□□□ -0.08
USP3-213ENST00000559711 EEF2P13639 858 aaKnown RBP14.57□□□□□ -0.08
USP3-213ENST00000559711 MARCKSP29966 332 aaPredicted RBP14.57□□□□□ -0.08
USP3-213ENST00000559711 MAP3K11Q16584 847 aa14.57□□□□□ -0.08
USP3-213ENST00000559711 NBPF9Q3BBW0 867 aa14.57□□□□□ -0.08
USP3-213ENST00000559711 GPATCH4Q5T3I0 446 aaKnown RBP14.57□□□□□ -0.08
USP3-213ENST00000559711 TYW1BQ6NUM6 668 aa14.57□□□□□ -0.08
USP3-213ENST00000559711 FMR1NBQ8N0W7 255 aaPredicted RBP14.57□□□□□ -0.08
USP3-213ENST00000559711 CCDC148Q8NFR7 591 aa14.57□□□□□ -0.08
USP3-213ENST00000559711 GPKOWQ92917 476 aaPredicted RBP eCLIP14.57□□□□□ -0.08
USP3-213ENST00000559711 TNMDQ9H2S6 317 aa14.57□□□□□ -0.08
USP3-213ENST00000559711 CPVLQ9H3G5 476 aa14.57□□□□□ -0.08
USP3-213ENST00000559711 PGAP2Q9UHJ9 254 aa14.57□□□□□ -0.08
USP3-213ENST00000559711 PCDHA4Q9UN74 947 aa14.57□□□□□ -0.08
USP3-213ENST00000559711 CEP131Q9UPN4 1083 aa14.57□□□□□ -0.08
USP3-213ENST00000559711 PCDHB6Q9Y5E3 794 aa14.57□□□□□ -0.08
USP3-213ENST00000559711 GREB1LQ9C091 1923 aaPredicted RBP14.57□□□□□ -0.08
USP3-213ENST00000559711 FAM237AA0A1B0GTK4 181 aa14.56□□□□□ -0.08
USP3-213ENST00000559711 M0R2N6 131 aa14.56□□□□□ -0.08
USP3-213ENST00000559711 CUTAO60888 179 aa14.56□□□□□ -0.08
USP3-213ENST00000559711 TRAPPC10P48553 1259 aa14.56□□□□□ -0.08
USP3-213ENST00000559711 MAP3K10Q02779 954 aa14.56□□□□□ -0.08
USP3-213ENST00000559711 RRP1BQ14684 758 aaKnown RBP14.56□□□□□ -0.08
USP3-213ENST00000559711 SEPT2Q15019 361 aa14.56□□□□□ -0.08
USP3-213ENST00000559711 CAMK4Q16566 473 aa14.56□□□□□ -0.08
USP3-213ENST00000559711 SHROOM1Q2M3G4 852 aaPredicted RBP14.56□□□□□ -0.08
USP3-213ENST00000559711 RBM26Q5T8P6 1007 aaKnown RBP14.56□□□□□ -0.08
USP3-213ENST00000559711 BLIDQ8IZY5 108 aa14.56□□□□□ -0.08
USP3-213ENST00000559711 UBA5Q9GZZ9 404 aa14.56□□□□□ -0.08
USP3-213ENST00000559711 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.56□□□□□ -0.082e-6■■■□□ 18.4
USP3-213ENST00000559711 VEZTQ9HBM0 779 aa14.56□□□□□ -0.08
USP3-213ENST00000559711 SYNPO2Q9UMS6 1093 aa14.56□□□□□ -0.08
USP3-213ENST00000559711 NOL7Q9UMY1 257 aaKnown RBP14.56□□□□□ -0.08
USP3-213ENST00000559711 FRMPD2Q68DX3 1309 aaPredicted RBP14.55□□□□□ -0.08
USP3-213ENST00000559711 SHTN1A0MZ66 631 aa14.55□□□□□ -0.08
USP3-213ENST00000559711 FAM205CA6NFA0 338 aa14.55□□□□□ -0.08
USP3-213ENST00000559711 TRIM75PA6NK02 468 aa14.55□□□□□ -0.08
USP3-213ENST00000559711 hCG_1984214I3L0E3 225 aa14.55□□□□□ -0.08
USP3-213ENST00000559711 CTAGE5O15320 804 aa14.55□□□□□ -0.08
USP3-213ENST00000559711 PTPREP23469 700 aa14.55□□□□□ -0.08
USP3-213ENST00000559711 NDUFA8P51970 172 aa14.55□□□□□ -0.08
USP3-213ENST00000559711 JAG1P78504 1218 aa14.55□□□□□ -0.08
USP3-213ENST00000559711 ATP2B2Q01814 1243 aa14.55□□□□□ -0.08
USP3-213ENST00000559711 ICA1Q05084 483 aa14.55□□□□□ -0.08
USP3-213ENST00000559711 HEATR3Q7Z4Q2 680 aa14.55□□□□□ -0.08
USP3-213ENST00000559711 ZNF713Q8N859 430 aaPredicted RBP14.55□□□□□ -0.08
USP3-213ENST00000559711 KRI1Q8N9T8 703 aaKnown RBP14.55□□□□□ -0.08
USP3-213ENST00000559711 CCDC12Q8WUD4 166 aaPredicted RBP14.55□□□□□ -0.08
USP3-213ENST00000559711 PIGSQ96S52 555 aa14.55□□□□□ -0.08
USP3-213ENST00000559711 ZMYND12Q9H0C1 365 aa14.55□□□□□ -0.08
USP3-213ENST00000559711 SEC63Q9UGP8 760 aaKnown RBP14.55□□□□□ -0.08
USP3-213ENST00000559711 A0A1B0GVL5 298 aa14.55□□□□□ -0.08
USP3-213ENST00000559711 ADAMTS3O15072 1205 aa14.55□□□□□ -0.08
USP3-213ENST00000559711 KINO60870 393 aaKnown RBP14.55□□□□□ -0.08
USP3-213ENST00000559711 GDF11O95390 407 aa14.55□□□□□ -0.08
USP3-213ENST00000559711 BMP15O95972 392 aa14.55□□□□□ -0.08
USP3-213ENST00000559711 GH2P01242 217 aa14.55□□□□□ -0.08
USP3-213ENST00000559711 GMPSP49915 693 aaPredicted RBP14.55□□□□□ -0.08
USP3-213ENST00000559711 DCAF4Q8WV16 495 aa14.55□□□□□ -0.08
USP3-213ENST00000559711 PANK2Q9BZ23 570 aa14.55□□□□□ -0.08
USP3-213ENST00000559711 TMEM39BQ9GZU3 492 aa14.55□□□□□ -0.08
USP3-213ENST00000559711 HPSEQ9Y251 543 aa14.55□□□□□ -0.08
USP3-213ENST00000559711 CCDC192P0DO97 292 aa14.54□□□□□ -0.08
USP3-213ENST00000559711 NOM1Q5C9Z4 860 aaKnown RBP14.54□□□□□ -0.08
USP3-213ENST00000559711 RESP18Q5W5W9 173 aa14.54□□□□□ -0.08
USP3-213ENST00000559711 SHC4Q6S5L8 630 aa14.54□□□□□ -0.08
USP3-213ENST00000559711 ZNF579Q8NAF0 562 aaKnown RBP14.54□□□□□ -0.08
USP3-213ENST00000559711 GMCL1P1Q8NEA9 526 aa14.54□□□□□ -0.08
USP3-213ENST00000559711 MTMR8Q96EF0 704 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms