RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 STX1AQ16623 288 aa14.46□□□□□ -0.09
SHMT2-229ENST00000557348 RESP18Q5W5W9 173 aa14.46□□□□□ -0.09
SHMT2-229ENST00000557348 RSBN1LQ6PCB5 846 aaPredicted RBP14.46□□□□□ -0.09
SHMT2-229ENST00000557348 LARGE2Q8N3Y3 721 aa14.46□□□□□ -0.09
SHMT2-229ENST00000557348 OGFOD1Q8N543 542 aa14.46□□□□□ -0.09
SHMT2-229ENST00000557348 RRP36Q96EU6 259 aaKnown RBP14.46□□□□□ -0.09
SHMT2-229ENST00000557348 SDF4Q9BRK5 362 aa14.46□□□□□ -0.09
SHMT2-229ENST00000557348 MXD3Q9BW11 206 aa14.46□□□□□ -0.09
SHMT2-229ENST00000557348 SEC63Q9UGP8 760 aaKnown RBP14.46□□□□□ -0.09
SHMT2-229ENST00000557348 ATRNL1Q5VV63 1379 aa14.46□□□□□ -0.09
SHMT2-229ENST00000557348 KLRF2D3W0D1 207 aa14.46□□□□□ -0.1
SHMT2-229ENST00000557348 VIL1P09327 827 aaKnown RBP14.46□□□□□ -0.1
SHMT2-229ENST00000557348 PTPREP23469 700 aa14.46□□□□□ -0.1
SHMT2-229ENST00000557348 GPATCH4Q5T3I0 446 aaKnown RBP14.46□□□□□ -0.1
SHMT2-229ENST00000557348 NIM1KQ8IY84 436 aa14.46□□□□□ -0.1
SHMT2-229ENST00000557348 FERMT2Q96AC1 680 aa14.46□□□□□ -0.1
SHMT2-229ENST00000557348 NAT10Q9H0A0 1025 aaKnown RBP14.46□□□□□ -0.1
SHMT2-229ENST00000557348 ANO10Q9NW15 660 aa14.46□□□□□ -0.1
SHMT2-229ENST00000557348 SYNPO2Q9UMS6 1093 aa14.46□□□□□ -0.1
SHMT2-229ENST00000557348 SRCAPQ6ZRS2 3230 aa14.45□□□□□ -0.1
SHMT2-229ENST00000557348 MYH6P13533 1939 aa14.45□□□□□ -0.1
SHMT2-229ENST00000557348 PFKFB1P16118 471 aa14.45□□□□□ -0.1
SHMT2-229ENST00000557348 KCNA3P22001 575 aa14.45□□□□□ -0.1
SHMT2-229ENST00000557348 SYKP43405 635 aa14.45□□□□□ -0.1
SHMT2-229ENST00000557348 NR5A1Q13285 461 aa14.45□□□□□ -0.1
SHMT2-229ENST00000557348 METTL16Q86W50 562 aaKnown RBP14.45□□□□□ -0.1
SHMT2-229ENST00000557348 RNF214Q8ND24 703 aa14.45□□□□□ -0.1
SHMT2-229ENST00000557348 AGBL3Q8NEM8 1001 aa14.45□□□□□ -0.1
SHMT2-229ENST00000557348 PYM1Q9BRP8 204 aaKnown RBP14.45□□□□□ -0.1
SHMT2-229ENST00000557348 CABP5Q9NP86 173 aa14.45□□□□□ -0.1
SHMT2-229ENST00000557348 BARHL2Q9NY43 387 aa14.45□□□□□ -0.1
SHMT2-229ENST00000557348 PCDHA4Q9UN74 947 aa14.45□□□□□ -0.1
SHMT2-229ENST00000557348 HPSEQ9Y251 543 aa14.45□□□□□ -0.1
SHMT2-229ENST00000557348 SRPRBQ9Y5M8 271 aaKnown RBP14.45□□□□□ -0.1
SHMT2-229ENST00000557348 ZNF646O15015 1829 aaPredicted RBP14.44□□□□□ -0.1
SHMT2-229ENST00000557348 PSME4Q14997 1843 aa14.44□□□□□ -0.1
SHMT2-229ENST00000557348 A0A1B0GVL5 298 aa14.44□□□□□ -0.1
SHMT2-229ENST00000557348 UBE2Q2LH0YL09 131 aa14.44□□□□□ -0.1
SHMT2-229ENST00000557348 ZNF202O95125 648 aa14.44□□□□□ -0.1
SHMT2-229ENST00000557348 SNHG28P0DPA3 235 aa14.44□□□□□ -0.1
SHMT2-229ENST00000557348 GNA11P29992 359 aa14.44□□□□□ -0.1
SHMT2-229ENST00000557348 SHMT1P34896 483 aa14.44□□□□□ -0.1
SHMT2-229ENST00000557348 TOB1P50616 345 aaPredicted RBP14.44□□□□□ -0.1
SHMT2-229ENST00000557348 NDUFA8P51970 172 aa14.44□□□□□ -0.1
SHMT2-229ENST00000557348 CFAP100Q494V2 611 aa14.44□□□□□ -0.1
SHMT2-229ENST00000557348 DALRD3Q5D0E6 543 aaKnown RBP14.44□□□□□ -0.1
SHMT2-229ENST00000557348 FKBP1CQ5VVH2 108 aa14.44□□□□□ -0.1
SHMT2-229ENST00000557348 KANK3Q6NY19 840 aa14.44□□□□□ -0.1
SHMT2-229ENST00000557348 CKAP2LQ8IYA6 745 aa14.44□□□□□ -0.1
SHMT2-229ENST00000557348 BLIDQ8IZY5 108 aa14.44□□□□□ -0.1
SHMT2-229ENST00000557348 TNFRSF25Q93038 417 aa14.44□□□□□ -0.1
SHMT2-229ENST00000557348 ZNRF3Q9ULT6 936 aa14.44□□□□□ -0.1
SHMT2-229ENST00000557348 MRVI1Q9Y6F6 885 aa14.44□□□□□ -0.1
SHMT2-229ENST00000557348 ESYT2A0FGR8 921 aa14.43□□□□□ -0.1
SHMT2-229ENST00000557348 YDJCA8MPS7 323 aa14.43□□□□□ -0.1
SHMT2-229ENST00000557348 CTIFO43310 598 aaKnown RBP14.43□□□□□ -0.1
SHMT2-229ENST00000557348 MARCKSP29966 332 aaPredicted RBP14.43□□□□□ -0.1
SHMT2-229ENST00000557348 GABPB1Q06547 395 aaPredicted RBP14.43□□□□□ -0.1
SHMT2-229ENST00000557348 ORC2Q13416 577 aaPredicted RBP14.43□□□□□ -0.1
SHMT2-229ENST00000557348 PPP1R18Q6NYC8 613 aa14.43□□□□□ -0.1
SHMT2-229ENST00000557348 STAG2Q8N3U4 1231 aa14.43□□□□□ -0.1
SHMT2-229ENST00000557348 MTMR14Q8NCE2 650 aa14.43□□□□□ -0.1
SHMT2-229ENST00000557348 OXER1Q8TDS5 423 aa14.43□□□□□ -0.1
SHMT2-229ENST00000557348 ANKRD7Q92527 254 aa14.43□□□□□ -0.1
SHMT2-229ENST00000557348 RIOX1Q9H6W3 641 aa14.43□□□□□ -0.1
SHMT2-229ENST00000557348 KANSL2Q9H9L4 492 aa14.43□□□□□ -0.1
SHMT2-229ENST00000557348 KCNQ5Q9NR82 932 aa14.43□□□□□ -0.1
SHMT2-229ENST00000557348 NYAP2Q9P242 653 aa14.43□□□□□ -0.1
SHMT2-229ENST00000557348 HERC5Q9UII4 1024 aaKnown RBP14.43□□□□□ -0.1
SHMT2-229ENST00000557348 PDHBP11177 359 aa14.42□□□□□ -0.1
SHMT2-229ENST00000557348 AKR1B1P15121 316 aa14.42□□□□□ -0.1
SHMT2-229ENST00000557348 NFIAQ12857 509 aa14.42□□□□□ -0.1
SHMT2-229ENST00000557348 NPY5RQ15761 445 aa14.42□□□□□ -0.1
SHMT2-229ENST00000557348 TTC38Q5R3I4 469 aa14.42□□□□□ -0.1
SHMT2-229ENST00000557348 TATDN1Q6P1N9 297 aa14.42□□□□□ -0.1
SHMT2-229ENST00000557348 TMEM179Q6ZVK1 233 aa14.42□□□□□ -0.1
SHMT2-229ENST00000557348 ZSCAN29Q8IWY8 852 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-229ENST00000557348 CEP57L1Q8IYX8 460 aa14.42□□□□□ -0.1
SHMT2-229ENST00000557348 PDGFDQ9GZP0 370 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-229ENST00000557348 C6orf50Q9HD87 102 aa14.42□□□□□ -0.1
SHMT2-229ENST00000557348 FAM198AQ9UFP1 575 aa14.42□□□□□ -0.1
SHMT2-229ENST00000557348 FBXO2Q9UK22 296 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-229ENST00000557348 SCN9AQ15858 1988 aa14.42□□□□□ -0.1
SHMT2-229ENST00000557348 CCDC194A0A1B0GVG4 234 aa14.42□□□□□ -0.1
SHMT2-229ENST00000557348 SPDYE2BA6NHP3 402 aa14.42□□□□□ -0.1
SHMT2-229ENST00000557348 SPDYE6P0CI01 402 aa14.42□□□□□ -0.1
SHMT2-229ENST00000557348 ZNF165P49910 485 aa14.42□□□□□ -0.1
SHMT2-229ENST00000557348 DLGAP5Q15398 846 aa14.42□□□□□ -0.1
SHMT2-229ENST00000557348 CERKLQ49MI3 558 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-229ENST00000557348 ANO6Q4KMQ2 910 aa14.42□□□□□ -0.1
SHMT2-229ENST00000557348 ARL6IP4Q66PJ3 421 aaKnown RBP14.42□□□□□ -0.1
SHMT2-229ENST00000557348 SHC4Q6S5L8 630 aa14.42□□□□□ -0.1
SHMT2-229ENST00000557348 KRT25Q7Z3Z0 450 aa14.42□□□□□ -0.1
SHMT2-229ENST00000557348 HEATR3Q7Z4Q2 680 aa14.42□□□□□ -0.1
SHMT2-229ENST00000557348 MKL1Q969V6 931 aa14.42□□□□□ -0.1
SHMT2-229ENST00000557348 GMLQ99445 158 aa14.42□□□□□ -0.1
SHMT2-229ENST00000557348 ZMYND12Q9H0C1 365 aa14.42□□□□□ -0.1
SHMT2-229ENST00000557348 KIAA1468Q9P260 1216 aa14.42□□□□□ -0.1
SHMT2-229ENST00000557348 CD2APQ9Y5K6 639 aa14.42□□□□□ -0.1
SHMT2-229ENST00000557348 LAD1O00515 517 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms