RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 MAPK4P31152 587 aa12.6□□□□□ -0.39
LINC00239-201ENST00000556973 TRDNQ13061 729 aa12.6□□□□□ -0.39
LINC00239-201ENST00000556973 NBPF11Q86T75 865 aa12.6□□□□□ -0.39
LINC00239-201ENST00000556973 IQCA1Q86XH1 822 aa12.6□□□□□ -0.39
LINC00239-201ENST00000556973 DGKHQ86XP1 1220 aa12.6□□□□□ -0.39
LINC00239-201ENST00000556973 CCAR1Q8IX12 1150 aaKnown RBP12.6□□□□□ -0.39
LINC00239-201ENST00000556973 LRRC47Q8N1G4 583 aaKnown RBP12.6□□□□□ -0.39
LINC00239-201ENST00000556973 PRPF38AQ8NAV1 312 aaKnown RBP12.6□□□□□ -0.39
LINC00239-201ENST00000556973 RAET1EQ8TD07 263 aa12.6□□□□□ -0.39
LINC00239-201ENST00000556973 GMCL1Q96IK5 515 aa12.6□□□□□ -0.39
LINC00239-201ENST00000556973 BTBD7Q9P203 1132 aa12.6□□□□□ -0.39
LINC00239-201ENST00000556973 ZSWIM5Q9P217 1185 aa12.6□□□□□ -0.39
LINC00239-201ENST00000556973 FEM1BQ9UK73 627 aa12.6□□□□□ -0.39
LINC00239-201ENST00000556973 PTCH2Q9Y6C5 1203 aa12.6□□□□□ -0.39
LINC00239-201ENST00000556973 NEDD4P46934 1319 aa12.6□□□□□ -0.39
LINC00239-201ENST00000556973 B4E1Z4 1266 aa12.59□□□□□ -0.39
LINC00239-201ENST00000556973 PEX10O60683 326 aa12.59□□□□□ -0.39
LINC00239-201ENST00000556973 KDM4AO75164 1064 aa12.59□□□□□ -0.39
LINC00239-201ENST00000556973 PRKCZQ05513 592 aa12.59□□□□□ -0.39
LINC00239-201ENST00000556973 NUP88Q99567 741 aaPredicted RBP12.59□□□□□ -0.39
LINC00239-201ENST00000556973 TMEM47Q9BQJ4 181 aa12.59□□□□□ -0.39
LINC00239-201ENST00000556973 LSG1Q9H089 658 aaKnown RBP12.59□□□□□ -0.39
LINC00239-201ENST00000556973 PPP1R9AQ9ULJ8 1098 aa12.59□□□□□ -0.39
LINC00239-201ENST00000556973 GABRQQ9UN88 632 aa12.59□□□□□ -0.39
LINC00239-201ENST00000556973 COL11A1P12107 1806 aaPredicted RBP12.59□□□□□ -0.39
LINC00239-201ENST00000556973 A0A0G2JMZ2 1700 aa12.59□□□□□ -0.39
LINC00239-201ENST00000556973 PLXNB2O15031 1838 aa12.58□□□□□ -0.4
LINC00239-201ENST00000556973 VWA5AO00534 786 aa12.58□□□□□ -0.4
LINC00239-201ENST00000556973 MCCP23508 829 aa12.58□□□□□ -0.4
LINC00239-201ENST00000556973 SLC1A4P43007 532 aa12.58□□□□□ -0.4
LINC00239-201ENST00000556973 FLT3LGP49771 235 aa12.58□□□□□ -0.4
LINC00239-201ENST00000556973 IRF5Q13568 498 aa12.58□□□□□ -0.4
LINC00239-201ENST00000556973 SLC9C1Q4G0N8 1177 aa12.58□□□□□ -0.4
LINC00239-201ENST00000556973 RCSD1Q6JBY9 416 aa12.58□□□□□ -0.4
LINC00239-201ENST00000556973 SAMD1Q6SPF0 538 aaPredicted RBP12.58□□□□□ -0.4
LINC00239-201ENST00000556973 NKX2-3Q8TAU0 364 aa12.58□□□□□ -0.4
LINC00239-201ENST00000556973 CHURC1Q8WUH1 139 aa12.58□□□□□ -0.4
LINC00239-201ENST00000556973 ATG4CQ96DT6 458 aa12.58□□□□□ -0.4
LINC00239-201ENST00000556973 SLF1Q9BQI6 1058 aa12.58□□□□□ -0.4
LINC00239-201ENST00000556973 ZKSCAN3Q9BRR0 538 aa12.58□□□□□ -0.4
LINC00239-201ENST00000556973 SPATC1LQ9H0A9 340 aa12.58□□□□□ -0.4
LINC00239-201ENST00000556973 PORCNQ9H237 461 aa12.58□□□□□ -0.4
LINC00239-201ENST00000556973 ANO2Q9NQ90 1003 aa12.58□□□□□ -0.4
LINC00239-201ENST00000556973 FBXO28Q9NVF7 368 aa12.58□□□□□ -0.4
LINC00239-201ENST00000556973 GJD2Q9UKL4 321 aa12.58□□□□□ -0.4
LINC00239-201ENST00000556973 RBM8AQ9Y5S9 174 aaKnown RBP12.58□□□□□ -0.4
LINC00239-201ENST00000556973 DOCK3Q8IZD9 2030 aa12.57□□□□□ -0.4
LINC00239-201ENST00000556973 E7EWF7 191 aa12.57□□□□□ -0.4
LINC00239-201ENST00000556973 PLA2G6O60733 806 aa12.57□□□□□ -0.4
LINC00239-201ENST00000556973 SLC25A27O95847 323 aa12.57□□□□□ -0.4
LINC00239-201ENST00000556973 FDX1P10109 184 aa12.57□□□□□ -0.4
LINC00239-201ENST00000556973 GRK4P32298 578 aa12.57□□□□□ -0.4
LINC00239-201ENST00000556973 TMEM132BQ14DG7 1078 aa12.57□□□□□ -0.4
LINC00239-201ENST00000556973 NECTIN1Q15223 517 aa12.57□□□□□ -0.4
LINC00239-201ENST00000556973 GPR142Q7Z601 462 aa12.57□□□□□ -0.4
LINC00239-201ENST00000556973 PLEKHH3Q7Z736 793 aa12.57□□□□□ -0.4
LINC00239-201ENST00000556973 FAM160B2Q86V87 743 aa12.57□□□□□ -0.4
LINC00239-201ENST00000556973 SHCBP1Q8NEM2 672 aa12.57□□□□□ -0.4
LINC00239-201ENST00000556973 NCOA7Q8NI08 942 aa12.57□□□□□ -0.4
LINC00239-201ENST00000556973 PXYLP1Q8TE99 480 aa12.57□□□□□ -0.4
LINC00239-201ENST00000556973 DCAF4Q8WV16 495 aa12.57□□□□□ -0.4
LINC00239-201ENST00000556973 ANKS1AQ92625 1134 aa12.57□□□□□ -0.4
LINC00239-201ENST00000556973 KIFC2Q96AC6 838 aa12.57□□□□□ -0.4
LINC00239-201ENST00000556973 ARMC5Q96C12 935 aa12.57□□□□□ -0.4
LINC00239-201ENST00000556973 ZSCAN10Q96SZ4 725 aaPredicted RBP12.57□□□□□ -0.4
LINC00239-201ENST00000556973 NUDT12Q9BQG2 462 aa12.57□□□□□ -0.4
LINC00239-201ENST00000556973 CWC22Q9HCG8 908 aaKnown RBP12.57□□□□□ -0.4
LINC00239-201ENST00000556973 TMEM232C9JQI7 657 aa12.56□□□□□ -0.4
LINC00239-201ENST00000556973 STRNO43815 780 aa12.56□□□□□ -0.4
LINC00239-201ENST00000556973 ADCY3O60266 1144 aa12.56□□□□□ -0.4
LINC00239-201ENST00000556973 ZBED4O75132 1171 aa12.56□□□□□ -0.4
LINC00239-201ENST00000556973 CAPN15O75808 1086 aa12.56□□□□□ -0.4
LINC00239-201ENST00000556973 STAT2P52630 851 aa12.56□□□□□ -0.4
LINC00239-201ENST00000556973 PLS1Q14651 629 aa12.56□□□□□ -0.4
LINC00239-201ENST00000556973 SLAIN1Q8ND83 568 aa12.56□□□□□ -0.4
LINC00239-201ENST00000556973 SOCS4Q8WXH5 440 aa12.56□□□□□ -0.4
LINC00239-201ENST00000556973 UBAC1Q9BSL1 405 aa12.56□□□□□ -0.4
LINC00239-201ENST00000556973 MOV10L1Q9BXT6 1211 aaKnown RBP12.56□□□□□ -0.4
LINC00239-201ENST00000556973 MROH8Q9H579 483 aa12.56□□□□□ -0.4
LINC00239-201ENST00000556973 CTDP1Q9Y5B0 961 aaPredicted RBP12.56□□□□□ -0.4
LINC00239-201ENST00000556973 SLC15A5A6NIM6 579 aa12.55□□□□□ -0.4
LINC00239-201ENST00000556973 ATP2A1O14983 1001 aa12.55□□□□□ -0.4
LINC00239-201ENST00000556973 XRCC5P13010 732 aaKnown RBP12.55□□□□□ -0.4
LINC00239-201ENST00000556973 ERCC3P19447 782 aa12.55□□□□□ -0.4
LINC00239-201ENST00000556973 PTPREP23469 700 aa12.55□□□□□ -0.4
LINC00239-201ENST00000556973 COPB2P35606 906 aa12.55□□□□□ -0.4
LINC00239-201ENST00000556973 STAT3P40763 770 aa12.55□□□□□ -0.4
LINC00239-201ENST00000556973 IKQ13123 557 aaPredicted RBP12.55□□□□□ -0.4
LINC00239-201ENST00000556973 WDR78Q5VTH9 848 aa12.55□□□□□ -0.4
LINC00239-201ENST00000556973 RNF20Q5VTR2 975 aa12.55□□□□□ -0.4
LINC00239-201ENST00000556973 KCTD1Q719H9 257 aa12.55□□□□□ -0.4
LINC00239-201ENST00000556973 CYB5R4Q7L1T6 521 aa12.55□□□□□ -0.4
LINC00239-201ENST00000556973 RALYLQ86SE5 291 aaKnown RBP12.55□□□□□ -0.4
LINC00239-201ENST00000556973 RIOX2Q8IUF8 465 aa12.55□□□□□ -0.4
LINC00239-201ENST00000556973 ENAHQ8N8S7 591 aaPredicted RBP12.55□□□□□ -0.4
LINC00239-201ENST00000556973 REPS2Q8NFH8 660 aa12.55□□□□□ -0.4
LINC00239-201ENST00000556973 SH3TC2Q8TF17 1288 aa12.55□□□□□ -0.4
LINC00239-201ENST00000556973 CHMP4CQ96CF2 233 aa12.55□□□□□ -0.4
LINC00239-201ENST00000556973 KAT14Q9H8E8 782 aa12.55□□□□□ -0.4
LINC00239-201ENST00000556973 SLC38A10Q9HBR0 1119 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms