RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 SEC24BO95487 1268 aa20.54■□□□□ 0.88
SHMT2-225ENST00000556798 BMP3P12645 472 aa20.54■□□□□ 0.88
SHMT2-225ENST00000556798 GCLCP48506 637 aaPredicted RBP20.54■□□□□ 0.88
SHMT2-225ENST00000556798 CAP1Q01518 475 aa20.54■□□□□ 0.88
SHMT2-225ENST00000556798 SEC23AQ15436 765 aa20.54■□□□□ 0.88
SHMT2-225ENST00000556798 CD99L2Q8TCZ2 262 aa20.54■□□□□ 0.88
SHMT2-225ENST00000556798 KCNB2Q92953 911 aa20.54■□□□□ 0.88
SHMT2-225ENST00000556798 SENP2Q9HC62 589 aa20.54■□□□□ 0.88
SHMT2-225ENST00000556798 TXNRD2Q9NNW7 524 aa20.54■□□□□ 0.88
SHMT2-225ENST00000556798 PRDM10Q9NQV6 1147 aa20.54■□□□□ 0.88
SHMT2-225ENST00000556798 SNX14Q9Y5W7 946 aa20.54■□□□□ 0.88
SHMT2-225ENST00000556798 EPB41L2O43491 1005 aaKnown RBP20.53■□□□□ 0.88
SHMT2-225ENST00000556798 PRC1O43663 620 aa20.53■□□□□ 0.88
SHMT2-225ENST00000556798 MCM5P33992 734 aa20.53■□□□□ 0.88
SHMT2-225ENST00000556798 SLC1A4P43007 532 aa20.53■□□□□ 0.88
SHMT2-225ENST00000556798 COG2Q14746 738 aa20.53■□□□□ 0.88
SHMT2-225ENST00000556798 CCDC96Q2M329 555 aa20.53■□□□□ 0.88
SHMT2-225ENST00000556798 TSGA10IPQ3SY00 556 aa20.53■□□□□ 0.88
SHMT2-225ENST00000556798 IFIT1BQ5T764 474 aaKnown RBP20.53■□□□□ 0.88
SHMT2-225ENST00000556798 KCTD1Q719H9 257 aa20.53■□□□□ 0.88
SHMT2-225ENST00000556798 ANKS1AQ92625 1134 aa20.53■□□□□ 0.88
SHMT2-225ENST00000556798 ATG4CQ96DT6 458 aa20.53■□□□□ 0.88
SHMT2-225ENST00000556798 GMCL1Q96IK5 515 aa20.53■□□□□ 0.88
SHMT2-225ENST00000556798 NEK1Q96PY6 1258 aa20.53■□□□□ 0.88
SHMT2-225ENST00000556798 KAT14Q9H8E8 782 aa20.53■□□□□ 0.88
SHMT2-225ENST00000556798 GPHNQ9NQX3 736 aaPredicted RBP20.53■□□□□ 0.88
SHMT2-225ENST00000556798 FRMPD2Q68DX3 1309 aaPredicted RBP20.53■□□□□ 0.88
SHMT2-225ENST00000556798 DSG3P32926 999 aa20.52■□□□□ 0.88
SHMT2-225ENST00000556798 LACTBP83111 547 aaPredicted RBP20.52■□□□□ 0.88
SHMT2-225ENST00000556798 KRT32Q14532 448 aa20.52■□□□□ 0.88
SHMT2-225ENST00000556798 FAM110CQ1W6H9 321 aa20.52■□□□□ 0.88
SHMT2-225ENST00000556798 TMEM67Q5HYA8 995 aa20.52■□□□□ 0.88
SHMT2-225ENST00000556798 PNMA1Q8ND90 353 aa20.52■□□□□ 0.88
SHMT2-225ENST00000556798 TCEANC2Q96MN5 208 aa20.52■□□□□ 0.88
SHMT2-225ENST00000556798 LRRC2Q9BYS8 371 aa20.52■□□□□ 0.88
SHMT2-225ENST00000556798 ARHGAP39Q9C0H5 1083 aa20.52■□□□□ 0.88
SHMT2-225ENST00000556798 RBPJLQ9UBG7 517 aa20.52■□□□□ 0.88
SHMT2-225ENST00000556798 MYH6P13533 1939 aa20.51■□□□□ 0.87
SHMT2-225ENST00000556798 ERICH2A1L162 156 aa20.51■□□□□ 0.87
SHMT2-225ENST00000556798 CNMDO75829 334 aa20.51■□□□□ 0.87
SHMT2-225ENST00000556798 PDHBP11177 359 aa20.51■□□□□ 0.87
SHMT2-225ENST00000556798 CTGFP29279 349 aa20.51■□□□□ 0.87
SHMT2-225ENST00000556798 WTAPQ15007 396 aa20.51■□□□□ 0.87
SHMT2-225ENST00000556798 SART3Q15020 963 aaKnown RBP20.51■□□□□ 0.87
SHMT2-225ENST00000556798 GTF3C2Q8WUA4 911 aaPredicted RBP20.51■□□□□ 0.87
SHMT2-225ENST00000556798 DCAF4Q8WV16 495 aa20.51■□□□□ 0.87
SHMT2-225ENST00000556798 ERO1AQ96HE7 468 aa20.51■□□□□ 0.87
SHMT2-225ENST00000556798 JAKMIP1Q96N16 626 aaKnown RBP20.51■□□□□ 0.87
SHMT2-225ENST00000556798 SLF1Q9BQI6 1058 aa20.51■□□□□ 0.87
SHMT2-225ENST00000556798 PPP1R9AQ9ULJ8 1098 aa20.51■□□□□ 0.87
SHMT2-225ENST00000556798 PLXNB2O15031 1838 aa20.5■□□□□ 0.87
SHMT2-225ENST00000556798 TMEM232C9JQI7 657 aa20.5■□□□□ 0.87
SHMT2-225ENST00000556798 CPA1P15085 419 aa20.5■□□□□ 0.87
SHMT2-225ENST00000556798 LBX2Q6XYB7 198 aa20.5■□□□□ 0.87
SHMT2-225ENST00000556798 IGDCC4Q8TDY8 1250 aa20.5■□□□□ 0.87
SHMT2-225ENST00000556798 HOXC10Q9NYD6 342 aa20.5■□□□□ 0.87
SHMT2-225ENST00000556798 BTBD7Q9P203 1132 aa20.5■□□□□ 0.87
SHMT2-225ENST00000556798 MORF4L1Q9UBU8 362 aa20.5■□□□□ 0.87
SHMT2-225ENST00000556798 MYPNQ86TC9 1320 aa20.5■□□□□ 0.87
SHMT2-225ENST00000556798 SH2B2O14492 632 aaPredicted RBP20.49■□□□□ 0.87
SHMT2-225ENST00000556798 ERVK-9P63128 1117 aa20.49■□□□□ 0.87
SHMT2-225ENST00000556798 ERVK-24P63145 666 aa20.49■□□□□ 0.87
SHMT2-225ENST00000556798 IKQ13123 557 aaPredicted RBP20.49■□□□□ 0.87
SHMT2-225ENST00000556798 TTBK2Q6IQ55 1244 aa20.49■□□□□ 0.87
SHMT2-225ENST00000556798 GPRC5AQ8NFJ5 357 aa20.49■□□□□ 0.87
SHMT2-225ENST00000556798 KIFC2Q96AC6 838 aa20.49■□□□□ 0.87
SHMT2-225ENST00000556798 LY9Q9HBG7 655 aa20.49■□□□□ 0.87
SHMT2-225ENST00000556798 GPCPD1Q9NPB8 672 aa20.49■□□□□ 0.87
SHMT2-225ENST00000556798 FEM1BQ9UK73 627 aa20.49■□□□□ 0.87
SHMT2-225ENST00000556798 RABGAP1Q9Y3P9 1069 aa20.49■□□□□ 0.87
SHMT2-225ENST00000556798 SMCHD1A6NHR9 2005 aa20.48■□□□□ 0.87
SHMT2-225ENST00000556798 GOLGA8HP0CJ92 632 aa20.48■□□□□ 0.87
SHMT2-225ENST00000556798 SNHG28P0DPA3 235 aa20.48■□□□□ 0.87
SHMT2-225ENST00000556798 STAT2P52630 851 aa20.48■□□□□ 0.87
SHMT2-225ENST00000556798 ZNF543Q08ER8 600 aa20.48■□□□□ 0.87
SHMT2-225ENST00000556798 KIF22Q14807 665 aa20.48■□□□□ 0.87
SHMT2-225ENST00000556798 Q3C1V9 767 aa20.48■□□□□ 0.87
SHMT2-225ENST00000556798 DHX32Q7L7V1 743 aaKnown RBP20.48■□□□□ 0.87
SHMT2-225ENST00000556798 TMEM87BQ96K49 555 aa20.48■□□□□ 0.87
SHMT2-225ENST00000556798 VWA5AO00534 786 aa20.47■□□□□ 0.87
SHMT2-225ENST00000556798 CASTP20810 708 aaKnown RBP20.47■□□□□ 0.87
SHMT2-225ENST00000556798 SLC16A2P36021 539 aa20.47■□□□□ 0.87
SHMT2-225ENST00000556798 PSMC4P43686 418 aa20.47■□□□□ 0.87
SHMT2-225ENST00000556798 COL13A1Q5TAT6 717 aaPredicted RBP20.47■□□□□ 0.87
SHMT2-225ENST00000556798 PRPF38AQ8NAV1 312 aaKnown RBP20.47■□□□□ 0.87
SHMT2-225ENST00000556798 TRIM47Q96LD4 638 aa20.47■□□□□ 0.87
SHMT2-225ENST00000556798 ADAMTS5Q9UNA0 930 aa20.47■□□□□ 0.87
SHMT2-225ENST00000556798 TRIM17Q9Y577 477 aa20.47■□□□□ 0.87
SHMT2-225ENST00000556798 EIF5BO60841 1220 aaKnown RBP20.46■□□□□ 0.87
SHMT2-225ENST00000556798 FMNL1O95466 1100 aaPredicted RBP20.46■□□□□ 0.87
SHMT2-225ENST00000556798 EXOSC10Q01780 885 aaKnown RBP20.46■□□□□ 0.87
SHMT2-225ENST00000556798 PLS1Q14651 629 aa20.46■□□□□ 0.87
SHMT2-225ENST00000556798 TMEM132BQ14DG7 1078 aa20.46■□□□□ 0.87
SHMT2-225ENST00000556798 BLOC1S2Q6QNY1 142 aa20.46■□□□□ 0.87
SHMT2-225ENST00000556798 CTU1Q7Z7A3 348 aaKnown RBP20.46■□□□□ 0.87
SHMT2-225ENST00000556798 FAM160B2Q86V87 743 aa20.46■□□□□ 0.87
SHMT2-225ENST00000556798 REPS2Q8NFH8 660 aa20.46■□□□□ 0.87
SHMT2-225ENST00000556798 CHURC1Q8WUH1 139 aa20.46■□□□□ 0.87
SHMT2-225ENST00000556798 MTA3Q9BTC8 594 aa20.46■□□□□ 0.87
SHMT2-225ENST00000556798 MYL10Q9BUA6 226 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 140.5 ms