RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 SPDYE16A6NNV3 312 aaPredicted RBP13.45□□□□□ -0.26
CCDC88C-212ENST00000556767 IFIT3O14879 490 aaKnown RBP13.45□□□□□ -0.26
CCDC88C-212ENST00000556767 DSG3P32926 999 aa13.45□□□□□ -0.26
CCDC88C-212ENST00000556767 PSMC4P43686 418 aa13.45□□□□□ -0.26
CCDC88C-212ENST00000556767 FCGRTP55899 365 aa13.45□□□□□ -0.26
CCDC88C-212ENST00000556767 SART3Q15020 963 aaKnown RBP13.45□□□□□ -0.26
CCDC88C-212ENST00000556767 IFIT1BQ5T764 474 aaKnown RBP13.45□□□□□ -0.26
CCDC88C-212ENST00000556767 RCSD1Q6JBY9 416 aa13.45□□□□□ -0.26
CCDC88C-212ENST00000556767 ATG4CQ96DT6 458 aa13.45□□□□□ -0.26
CCDC88C-212ENST00000556767 SLF1Q9BQI6 1058 aa13.45□□□□□ -0.26
CCDC88C-212ENST00000556767 ARHGAP39Q9C0H5 1083 aa13.45□□□□□ -0.26
CCDC88C-212ENST00000556767 EFCC1Q9HA90 598 aa13.45□□□□□ -0.26
CCDC88C-212ENST00000556767 CWC22Q9HCG8 908 aaKnown RBP13.45□□□□□ -0.26
CCDC88C-212ENST00000556767 TXNRD2Q9NNW7 524 aa13.45□□□□□ -0.26
CCDC88C-212ENST00000556767 RBPJLQ9UBG7 517 aa13.45□□□□□ -0.26
CCDC88C-212ENST00000556767 CTDP1Q9Y5B0 961 aaPredicted RBP13.45□□□□□ -0.26
CCDC88C-212ENST00000556767 TMEM232C9JQI7 657 aa13.44□□□□□ -0.26
CCDC88C-212ENST00000556767 NOVP48745 357 aa13.44□□□□□ -0.26
CCDC88C-212ENST00000556767 PLS1Q14651 629 aa13.44□□□□□ -0.26
CCDC88C-212ENST00000556767 WDR78Q5VTH9 848 aa13.44□□□□□ -0.26
CCDC88C-212ENST00000556767 KCTD1Q719H9 257 aa13.44□□□□□ -0.26
CCDC88C-212ENST00000556767 RASGRP2Q7LDG7 609 aa13.44□□□□□ -0.26
CCDC88C-212ENST00000556767 MB21D2Q8IYB1 491 aaPredicted RBP13.44□□□□□ -0.26
CCDC88C-212ENST00000556767 ENAHQ8N8S7 591 aaPredicted RBP13.44□□□□□ -0.26
CCDC88C-212ENST00000556767 KIFC2Q96AC6 838 aa13.44□□□□□ -0.26
CCDC88C-212ENST00000556767 GMCL1Q96IK5 515 aa13.44□□□□□ -0.26
CCDC88C-212ENST00000556767 MORF4L1Q9UBU8 362 aa13.44□□□□□ -0.26
CCDC88C-212ENST00000556767 RABGAP1Q9Y3P9 1069 aa13.44□□□□□ -0.26
CCDC88C-212ENST00000556767 FRMPD2Q68DX3 1309 aaPredicted RBP13.43□□□□□ -0.26
CCDC88C-212ENST00000556767 TNPO2O14787 897 aaKnown RBP13.43□□□□□ -0.26
CCDC88C-212ENST00000556767 PRC1O43663 620 aa13.43□□□□□ -0.26
CCDC88C-212ENST00000556767 HOXD10P28358 340 aa13.43□□□□□ -0.26
CCDC88C-212ENST00000556767 MCM5P33992 734 aa13.43□□□□□ -0.26
CCDC88C-212ENST00000556767 HSPA4P34932 840 aa13.43□□□□□ -0.26
CCDC88C-212ENST00000556767 ERVK-9P63128 1117 aa13.43□□□□□ -0.26
CCDC88C-212ENST00000556767 ERVK-24P63145 666 aa13.43□□□□□ -0.26
CCDC88C-212ENST00000556767 CCNA1P78396 465 aa13.43□□□□□ -0.26
CCDC88C-212ENST00000556767 KRT32Q14532 448 aa13.43□□□□□ -0.26
CCDC88C-212ENST00000556767 WTAPQ15007 396 aa13.43□□□□□ -0.26
CCDC88C-212ENST00000556767 Q3C1V9 767 aa13.43□□□□□ -0.26
CCDC88C-212ENST00000556767 TMEM67Q5HYA8 995 aa13.43□□□□□ -0.26
CCDC88C-212ENST00000556767 OTOP1Q7RTM1 612 aa13.43□□□□□ -0.26
CCDC88C-212ENST00000556767 RASEFQ8IZ41 740 aa13.43□□□□□ -0.26
CCDC88C-212ENST00000556767 TNS4Q8IZW8 715 aa13.43□□□□□ -0.26
CCDC88C-212ENST00000556767 PNMA1Q8ND90 353 aa13.43□□□□□ -0.26
CCDC88C-212ENST00000556767 DCAF4Q8WV16 495 aa13.43□□□□□ -0.26
CCDC88C-212ENST00000556767 ANKS1AQ92625 1134 aa13.43□□□□□ -0.26
CCDC88C-212ENST00000556767 NEK1Q96PY6 1258 aa13.43□□□□□ -0.26
CCDC88C-212ENST00000556767 GPCPD1Q9NPB8 672 aa13.43□□□□□ -0.26
CCDC88C-212ENST00000556767 BTBD7Q9P203 1132 aa13.43□□□□□ -0.26
CCDC88C-212ENST00000556767 FEM1BQ9UK73 627 aa13.43□□□□□ -0.26
CCDC88C-212ENST00000556767 PPP1R9AQ9ULJ8 1098 aa13.43□□□□□ -0.26
CCDC88C-212ENST00000556767 MYPNQ86TC9 1320 aa13.42□□□□□ -0.26
CCDC88C-212ENST00000556767 ZSWIM8A7E2V4 1837 aa13.42□□□□□ -0.26
CCDC88C-212ENST00000556767 EIF5BO60841 1220 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-212ENST00000556767 CNMDO75829 334 aa13.42□□□□□ -0.26
CCDC88C-212ENST00000556767 PDHBP11177 359 aa13.42□□□□□ -0.26
CCDC88C-212ENST00000556767 CTGFP29279 349 aa13.42□□□□□ -0.26
CCDC88C-212ENST00000556767 SLC4A3P48751 1232 aa13.42□□□□□ -0.26
CCDC88C-212ENST00000556767 STAT2P52630 851 aa13.42□□□□□ -0.26
CCDC88C-212ENST00000556767 ANTXR2P58335 489 aa13.42□□□□□ -0.26
CCDC88C-212ENST00000556767 CAP1Q01518 475 aa13.42□□□□□ -0.26
CCDC88C-212ENST00000556767 POTEEQ6S8J3 1075 aa13.42□□□□□ -0.26
CCDC88C-212ENST00000556767 LBX2Q6XYB7 198 aa13.42□□□□□ -0.26
CCDC88C-212ENST00000556767 MB21D1Q8N884 522 aa13.42□□□□□ -0.26
CCDC88C-212ENST00000556767 PRPF38AQ8NAV1 312 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-212ENST00000556767 CHURC1Q8WUH1 139 aa13.42□□□□□ -0.26
CCDC88C-212ENST00000556767 COA7Q96BR5 231 aa13.42□□□□□ -0.26
CCDC88C-212ENST00000556767 TRIM47Q96LD4 638 aa13.42□□□□□ -0.26
CCDC88C-212ENST00000556767 MCOLN1Q9GZU1 580 aa13.42□□□□□ -0.26
CCDC88C-212ENST00000556767 VWA5AO00534 786 aa13.41□□□□□ -0.26
CCDC88C-212ENST00000556767 ZBED4O75132 1171 aa13.41□□□□□ -0.26
CCDC88C-212ENST00000556767 GNRH1P01148 92 aa13.41□□□□□ -0.26
CCDC88C-212ENST00000556767 GOLGA8HP0CJ92 632 aa13.41□□□□□ -0.26
CCDC88C-212ENST00000556767 SEC23AQ15436 765 aa13.41□□□□□ -0.26
CCDC88C-212ENST00000556767 PKN2Q16513 984 aaKnown RBP13.41□□□□□ -0.26
CCDC88C-212ENST00000556767 ADCK5Q3MIX3 580 aa13.41□□□□□ -0.26
CCDC88C-212ENST00000556767 TTBK2Q6IQ55 1244 aa13.41□□□□□ -0.26
CCDC88C-212ENST00000556767 NFXL1Q6ZNB6 911 aa13.41□□□□□ -0.26
CCDC88C-212ENST00000556767 FAM160B2Q86V87 743 aa13.41□□□□□ -0.26
CCDC88C-212ENST00000556767 CPXCR1Q8N123 301 aa13.41□□□□□ -0.26
CCDC88C-212ENST00000556767 JAKMIP1Q96N16 626 aaKnown RBP13.41□□□□□ -0.26
CCDC88C-212ENST00000556767 USP26Q9BXU7 913 aa13.41□□□□□ -0.26
CCDC88C-212ENST00000556767 LRRC2Q9BYS8 371 aa13.41□□□□□ -0.26
CCDC88C-212ENST00000556767 SNX14Q9Y5W7 946 aa13.41□□□□□ -0.26
CCDC88C-212ENST00000556767 EPB41L2O43491 1005 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-212ENST00000556767 MAPK4P31152 587 aa13.4□□□□□ -0.26
CCDC88C-212ENST00000556767 SLC16A2P36021 539 aa13.4□□□□□ -0.26
CCDC88C-212ENST00000556767 FGD1P98174 961 aa13.4□□□□□ -0.26
CCDC88C-212ENST00000556767 TMEM132BQ14DG7 1078 aa13.4□□□□□ -0.26
CCDC88C-212ENST00000556767 TSGA10IPQ3SY00 556 aa13.4□□□□□ -0.26
CCDC88C-212ENST00000556767 NCAPG2Q86XI2 1143 aa13.4□□□□□ -0.26
CCDC88C-212ENST00000556767 TMEM87BQ96K49 555 aa13.4□□□□□ -0.26
CCDC88C-212ENST00000556767 TCEANC2Q96MN5 208 aa13.4□□□□□ -0.26
CCDC88C-212ENST00000556767 SPATC1LQ9H0A9 340 aa13.4□□□□□ -0.26
CCDC88C-212ENST00000556767 PORCNQ9H237 461 aa13.4□□□□□ -0.26
CCDC88C-212ENST00000556767 SENP2Q9HC62 589 aa13.4□□□□□ -0.26
CCDC88C-212ENST00000556767 GPHNQ9NQX3 736 aaPredicted RBP13.4□□□□□ -0.26
CCDC88C-212ENST00000556767 RLFQ13129 1914 aa13.4□□□□□ -0.26
CCDC88C-212ENST00000556767 MGAMO43451 1857 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms