RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 MAPK4P31152 587 aa12.28□□□□□ -0.44
SCFD1-220ENST00000556486 ABL2P42684 1182 aa12.28□□□□□ -0.44
SCFD1-220ENST00000556486 PLEKHH3Q7Z736 793 aa12.28□□□□□ -0.44
SCFD1-220ENST00000556486 TEX11Q8IYF3 940 aa12.28□□□□□ -0.44
SCFD1-220ENST00000556486 SPATA5Q8NB90 893 aa12.28□□□□□ -0.44
SCFD1-220ENST00000556486 SH3RF3Q8TEJ3 882 aaPredicted RBP12.28□□□□□ -0.44
SCFD1-220ENST00000556486 BADQ92934 168 aa12.28□□□□□ -0.44
SCFD1-220ENST00000556486 NSUN4Q96CB9 384 aaKnown RBP12.28□□□□□ -0.44
SCFD1-220ENST00000556486 AS3MTQ9HBK9 375 aa12.28□□□□□ -0.44
SCFD1-220ENST00000556486 RAI14Q9P0K7 980 aa12.28□□□□□ -0.44
SCFD1-220ENST00000556486 RLFQ13129 1914 aa12.27□□□□□ -0.44
SCFD1-220ENST00000556486 LDHCP07864 332 aa12.27□□□□□ -0.45
SCFD1-220ENST00000556486 CD46P15529 392 aa12.27□□□□□ -0.45
SCFD1-220ENST00000556486 CYP2C19P33261 490 aa12.27□□□□□ -0.45
SCFD1-220ENST00000556486 BACE1P56817 501 aa12.27□□□□□ -0.45
SCFD1-220ENST00000556486 GSTO1P78417 241 aa12.27□□□□□ -0.45
SCFD1-220ENST00000556486 ZNF454Q8N9F8 522 aa12.27□□□□□ -0.45
SCFD1-220ENST00000556486 USP38Q8NB14 1042 aa12.27□□□□□ -0.45
SCFD1-220ENST00000556486 TRPV1Q8NER1 839 aa12.27□□□□□ -0.45
SCFD1-220ENST00000556486 DNAJC18Q9H819 358 aa12.27□□□□□ -0.45
SCFD1-220ENST00000556486 GPR108Q9NPR9 543 aa12.27□□□□□ -0.45
SCFD1-220ENST00000556486 PNMA6EA0A0J9YXQ4 647 aa12.26□□□□□ -0.45
SCFD1-220ENST00000556486 CNMDO75829 334 aa12.26□□□□□ -0.45
SCFD1-220ENST00000556486 PBX2P40425 430 aa12.26□□□□□ -0.45
SCFD1-220ENST00000556486 SH3RF1Q7Z6J0 888 aa12.26□□□□□ -0.45
SCFD1-220ENST00000556486 MAPKAPK5Q8IW41 473 aa12.26□□□□□ -0.45
SCFD1-220ENST00000556486 TRMT44Q8IYL2 757 aaKnown RBP12.26□□□□□ -0.45
SCFD1-220ENST00000556486 EDC3Q96F86 508 aaKnown RBP12.26□□□□□ -0.45
SCFD1-220ENST00000556486 ZNF512BQ96KM6 892 aaPredicted RBP12.26□□□□□ -0.45
SCFD1-220ENST00000556486 NEUROD6Q96NK8 337 aa12.26□□□□□ -0.45
SCFD1-220ENST00000556486 DDX20Q9UHI6 824 aaKnown RBP12.26□□□□□ -0.45
SCFD1-220ENST00000556486 SAP30BPQ9UHR5 308 aaKnown RBP12.26□□□□□ -0.45
SCFD1-220ENST00000556486 TTC28Q96AY4 2481 aa12.26□□□□□ -0.45
SCFD1-220ENST00000556486 RCCD1A6NED2 376 aa12.25□□□□□ -0.45
SCFD1-220ENST00000556486 USP17L10C9JJH3 530 aa12.25□□□□□ -0.45
SCFD1-220ENST00000556486 UQCRFS1P1P0C7P4 283 aa12.25□□□□□ -0.45
SCFD1-220ENST00000556486 HOXA7P31268 230 aaPredicted RBP12.25□□□□□ -0.45
SCFD1-220ENST00000556486 MCAMP43121 646 aa12.25□□□□□ -0.45
SCFD1-220ENST00000556486 CSPP1Q1MSJ5 1256 aa12.25□□□□□ -0.45
SCFD1-220ENST00000556486 TRIM60Q495X7 471 aa12.25□□□□□ -0.45
SCFD1-220ENST00000556486 MFSD14CQ5VZR4 134 aa12.25□□□□□ -0.45
SCFD1-220ENST00000556486 METTL16Q86W50 562 aaKnown RBP12.25□□□□□ -0.45
SCFD1-220ENST00000556486 NPLOC4Q8TAT6 608 aa12.25□□□□□ -0.45
SCFD1-220ENST00000556486 PPM1EQ8WY54 764 aa12.25□□□□□ -0.45
SCFD1-220ENST00000556486 GLMNQ92990 594 aa12.25□□□□□ -0.45
SCFD1-220ENST00000556486 FERMT2Q96AC1 680 aa12.25□□□□□ -0.45
SCFD1-220ENST00000556486 WDR18Q9BV38 432 aa12.25□□□□□ -0.45
SCFD1-220ENST00000556486 AATFQ9NY61 560 aaKnown RBP eCLIP12.25□□□□□ -0.45
SCFD1-220ENST00000556486 HERC5Q9UII4 1024 aaKnown RBP12.25□□□□□ -0.45
SCFD1-220ENST00000556486 MYO5AQ9Y4I1 1855 aaKnown RBP12.25□□□□□ -0.45
SCFD1-220ENST00000556486 POM121CA8CG34 1229 aa12.24□□□□□ -0.45
SCFD1-220ENST00000556486 BCAR3O75815 825 aa12.24□□□□□ -0.45
SCFD1-220ENST00000556486 PPP4CP60510 307 aa12.24□□□□□ -0.45
SCFD1-220ENST00000556486 ATP2B2Q01814 1243 aa12.24□□□□□ -0.45
SCFD1-220ENST00000556486 G3BP1Q13283 466 aaKnown RBP eCLIP12.24□□□□□ -0.45
SCFD1-220ENST00000556486 CRACR2BQ8N4Y2 399 aaPredicted RBP12.24□□□□□ -0.45
SCFD1-220ENST00000556486 SSH3Q8TE77 659 aa12.24□□□□□ -0.45
SCFD1-220ENST00000556486 TGFBRAP1Q8WUH2 860 aa12.24□□□□□ -0.45
SCFD1-220ENST00000556486 TRIM34Q9BYJ4 488 aa12.24□□□□□ -0.45
SCFD1-220ENST00000556486 ADAM33Q9BZ11 813 aa12.24□□□□□ -0.45
SCFD1-220ENST00000556486 DHX36Q9H2U1 1008 aaKnown RBP12.24□□□□□ -0.45
SCFD1-220ENST00000556486 PALD1Q9ULE6 856 aa12.24□□□□□ -0.45
SCFD1-220ENST00000556486 ZBTB21Q9ULJ3 1066 aa12.24□□□□□ -0.45
SCFD1-220ENST00000556486 FOCADQ5VW36 1801 aa12.23□□□□□ -0.45
SCFD1-220ENST00000556486 TRIM43BA6NCK2 446 aa12.23□□□□□ -0.45
SCFD1-220ENST00000556486 MOXD2PA6NHM9 499 aa12.23□□□□□ -0.45
SCFD1-220ENST00000556486 DNM1LO00429 736 aa12.23□□□□□ -0.45
SCFD1-220ENST00000556486 ASNSP08243 561 aa12.23□□□□□ -0.45
SCFD1-220ENST00000556486 EPHB4P54760 987 aa12.23□□□□□ -0.45
SCFD1-220ENST00000556486 MMRN1Q13201 1228 aa12.23□□□□□ -0.45
SCFD1-220ENST00000556486 PPP4R3BQ5MIZ7 849 aa12.23□□□□□ -0.45
SCFD1-220ENST00000556486 GORABQ5T7V8 394 aa12.23□□□□□ -0.45
SCFD1-220ENST00000556486 TMCO4Q5TGY1 634 aa12.23□□□□□ -0.45
SCFD1-220ENST00000556486 SLC39A5Q6ZMH5 540 aa12.23□□□□□ -0.45
SCFD1-220ENST00000556486 LPAR1Q92633 364 aa12.23□□□□□ -0.45
SCFD1-220ENST00000556486 TRIM43Q96BQ3 446 aaPredicted RBP12.23□□□□□ -0.45
SCFD1-220ENST00000556486 GZF1Q9H116 711 aaPredicted RBP12.23□□□□□ -0.45
SCFD1-220ENST00000556486 PDLIM7Q9NR12 457 aa12.23□□□□□ -0.45
SCFD1-220ENST00000556486 NOP58Q9Y2X3 529 aaKnown RBP12.23□□□□□ -0.45
SCFD1-220ENST00000556486 TMEM265A0A087WTH1 108 aa12.22□□□□□ -0.45
SCFD1-220ENST00000556486 LILRB3O75022 631 aa12.22□□□□□ -0.45
SCFD1-220ENST00000556486 AP1G2O75843 785 aa12.22□□□□□ -0.45
SCFD1-220ENST00000556486 ITGB8P26012 769 aa12.22□□□□□ -0.45
SCFD1-220ENST00000556486 ADCYAP1R1P41586 468 aa12.22□□□□□ -0.45
SCFD1-220ENST00000556486 PDE4CQ08493 712 aa12.22□□□□□ -0.45
SCFD1-220ENST00000556486 GRIN2CQ14957 1233 aa12.22□□□□□ -0.45
SCFD1-220ENST00000556486 QPCTQ16769 361 aa12.22□□□□□ -0.45
SCFD1-220ENST00000556486 TNNI3KQ59H18 835 aa12.22□□□□□ -0.45
SCFD1-220ENST00000556486 PRAMEF19Q5SWL8 479 aa12.22□□□□□ -0.45
SCFD1-220ENST00000556486 ZKSCAN2Q63HK3 967 aa12.22□□□□□ -0.45
SCFD1-220ENST00000556486 ADGRA1Q86SQ6 560 aa12.22□□□□□ -0.45
SCFD1-220ENST00000556486 TMEM57Q8N5G2 664 aa12.22□□□□□ -0.45
SCFD1-220ENST00000556486 SYMPKQ92797 1274 aaKnown RBP12.22□□□□□ -0.45
SCFD1-220ENST00000556486 FEZ1Q99689 392 aa12.22□□□□□ -0.45
SCFD1-220ENST00000556486 GINM1Q9NU53 330 aa12.22□□□□□ -0.45
SCFD1-220ENST00000556486 BTBD7Q9P203 1132 aa12.22□□□□□ -0.45
SCFD1-220ENST00000556486 LRP2BPQ9P2M1 347 aa12.22□□□□□ -0.45
SCFD1-220ENST00000556486 PI4KBQ9UBF8 816 aa12.22□□□□□ -0.45
SCFD1-220ENST00000556486 TNNQ9UQP3 1299 aa12.22□□□□□ -0.45
SCFD1-220ENST00000556486 FPGT-TNNI3KV9GXZ4 949 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms