RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 ANKRD13CQ8N6S4 541 aa16.7■□□□□ 0.26
CUX1-215ENST00000556210 DCP1AQ9NPI6 582 aaPredicted RBP16.7■□□□□ 0.26
CUX1-215ENST00000556210 RMND1Q9NWS8 449 aa16.7■□□□□ 0.26
CUX1-215ENST00000556210 CAMTA2O94983 1202 aa16.69■□□□□ 0.26
CUX1-215ENST00000556210 PTF1AQ7RTS3 328 aa16.69■□□□□ 0.26
CUX1-215ENST00000556210 COA7Q96BR5 231 aa16.69■□□□□ 0.26
CUX1-215ENST00000556210 GGA1Q9UJY5 639 aa16.69■□□□□ 0.26
CUX1-215ENST00000556210 NKX1-1Q15270 411 aaPredicted RBP16.69■□□□□ 0.26
CUX1-215ENST00000556210 PAGE5Q96GU1 130 aa16.69■□□□□ 0.26
CUX1-215ENST00000556210 NBPF3Q9H094 633 aa16.69■□□□□ 0.26
CUX1-215ENST00000556210 FAM196BA6NMK8 535 aa16.69■□□□□ 0.26
CUX1-215ENST00000556210 CACNB3P54284 484 aa16.69■□□□□ 0.26
CUX1-215ENST00000556210 RABEP2Q9H5N1 569 aa16.69■□□□□ 0.26
CUX1-215ENST00000556210 PKD2L1Q9P0L9 805 aa16.69■□□□□ 0.26
CUX1-215ENST00000556210 SRPRBQ9Y5M8 271 aaKnown RBP16.69■□□□□ 0.26
CUX1-215ENST00000556210 GOLGA6L9A6NEM1 432 aa16.68■□□□□ 0.26
CUX1-215ENST00000556210 CACNB1Q02641 598 aaPredicted RBP16.68■□□□□ 0.26
CUX1-215ENST00000556210 PLCD3Q8N3E9 789 aa16.68■□□□□ 0.26
CUX1-215ENST00000556210 SRBD1Q8N5C6 995 aaKnown RBP16.68■□□□□ 0.26
CUX1-215ENST00000556210 WDR66Q8TBY9 1149 aa16.68■□□□□ 0.26
CUX1-215ENST00000556210 FERMT2Q96AC1 680 aa16.68■□□□□ 0.26
CUX1-215ENST00000556210 OVOS2A0A0G2JMS6 1433 aa16.68■□□□□ 0.26
CUX1-215ENST00000556210 SGMS1Q86VZ5 419 aa16.68■□□□□ 0.26
CUX1-215ENST00000556210 FCHSD1Q86WN1 690 aa16.68■□□□□ 0.26
CUX1-215ENST00000556210 FOXP4Q8IVH2 680 aaPredicted RBP16.68■□□□□ 0.26
CUX1-215ENST00000556210 C10orf67Q8IYJ2 551 aa16.68■□□□□ 0.26
CUX1-215ENST00000556210 NOC4LQ9BVI4 516 aaKnown RBP16.68■□□□□ 0.26
CUX1-215ENST00000556210 PLA2G12BQ9BX93 195 aa16.68■□□□□ 0.26
CUX1-215ENST00000556210 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.68■□□□□ 0.26
CUX1-215ENST00000556210 PLCD1P51178 756 aa16.68■□□□□ 0.26
CUX1-215ENST00000556210 MRPS25P82663 173 aaKnown RBP16.68■□□□□ 0.26
CUX1-215ENST00000556210 MORC3Q14149 939 aa16.68■□□□□ 0.26
CUX1-215ENST00000556210 PLS1Q14651 629 aa16.68■□□□□ 0.26
CUX1-215ENST00000556210 USH1GQ495M9 461 aa16.68■□□□□ 0.26
CUX1-215ENST00000556210 INTS5Q6P9B9 1019 aaKnown RBP16.68■□□□□ 0.26
CUX1-215ENST00000556210 KIAA0825Q8IV33 1275 aa16.68■□□□□ 0.26
CUX1-215ENST00000556210 VSTM4Q8IW00 320 aa16.68■□□□□ 0.26
CUX1-215ENST00000556210 BSDC1Q9NW68 430 aaPredicted RBP16.68■□□□□ 0.26
CUX1-215ENST00000556210 CTAGE15A4D2H0 777 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 KCNJ18B7U540 433 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 CTAGE8P0CG41 777 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 OAS2P29728 719 aaKnown RBP16.67■□□□□ 0.26
CUX1-215ENST00000556210 KCNJ12Q14500 433 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 CTAGE6Q86UF2 777 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 CTAGE4Q8IX94 777 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 CCDC42Q96M95 316 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 CRACR2AQ9BSW2 395 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 IKBKBO14920 756 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 SLFN14P0C7P3 912 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 LRRC41Q15345 812 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 EARS2Q5JPH6 523 aaKnown RBP16.67■□□□□ 0.26
CUX1-215ENST00000556210 CABP7Q86V35 215 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 CNGA4Q8IV77 575 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 DHX37Q8IY37 1157 aaKnown RBP16.67■□□□□ 0.26
CUX1-215ENST00000556210 CDCA7Q9BWT1 371 aaPredicted RBP16.67■□□□□ 0.26
CUX1-215ENST00000556210 NLRC4Q9NPP4 1024 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 VEGFAP15692 232 aaPredicted RBP16.67■□□□□ 0.26
CUX1-215ENST00000556210 NFIXQ14938 502 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 SPATA1Q5VX52 437 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 RASGRP2Q7LDG7 609 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 HPS3Q969F9 1004 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 RAB34Q9BZG1 259 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 RFX7Q2KHR2 1363 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 FOXP2O15409 715 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 ZMYND10O75800 440 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 AMPD3Q01432 767 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 SPAG1Q07617 926 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 DNAJC21Q5F1R6 531 aaKnown RBP16.67■□□□□ 0.26
CUX1-215ENST00000556210 GOLGA1Q92805 767 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 TSPYL1Q9H0U9 437 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 ARPP21Q9UBL0 812 aaPredicted RBP16.67■□□□□ 0.26
CUX1-215ENST00000556210 LRWD1Q9UFC0 647 aa16.67■□□□□ 0.26
CUX1-215ENST00000556210 PSDA5PKW4 1024 aaPredicted RBP16.66■□□□□ 0.26
CUX1-215ENST00000556210 GNA11P29992 359 aa16.66■□□□□ 0.26
CUX1-215ENST00000556210 TOB1P50616 345 aaPredicted RBP16.66■□□□□ 0.26
CUX1-215ENST00000556210 KRT79Q5XKE5 535 aa16.66■□□□□ 0.26
CUX1-215ENST00000556210 TTF2Q9UNY4 1162 aaKnown RBP16.66■□□□□ 0.26
CUX1-215ENST00000556210 TRAF5O00463 557 aa16.66■□□□□ 0.26
CUX1-215ENST00000556210 RPN1P04843 607 aaKnown RBP16.66■□□□□ 0.26
CUX1-215ENST00000556210 DPP8Q6V1X1 898 aaPredicted RBP16.66■□□□□ 0.26
CUX1-215ENST00000556210 AGXT2Q9BYV1 514 aa16.66■□□□□ 0.26
CUX1-215ENST00000556210 FBXO2Q9UK22 296 aaPredicted RBP16.66■□□□□ 0.26
CUX1-215ENST00000556210 FER1L4A9Z1Z3 1794 aa16.66■□□□□ 0.26
CUX1-215ENST00000556210 NOP2P46087 812 aaKnown RBP16.66■□□□□ 0.26
CUX1-215ENST00000556210 CHMP4BP1P59074 171 aa16.66■□□□□ 0.26
CUX1-215ENST00000556210 NONOQ15233 471 aaKnown RBP eCLIP16.66■□□□□ 0.261e-6■■■□□ 16.7
CUX1-215ENST00000556210 ARHGEF1Q92888 912 aaKnown RBP16.66■□□□□ 0.26
CUX1-215ENST00000556210 PIGSQ96S52 555 aa16.66■□□□□ 0.26
CUX1-215ENST00000556210 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.66■□□□□ 0.268e-7■■■■■ 154.8
CUX1-215ENST00000556210 VPS18Q9P253 973 aa16.66■□□□□ 0.26
CUX1-215ENST00000556210 NTSR2O95665 410 aa16.65■□□□□ 0.26
CUX1-215ENST00000556210 PNMA6AP0CW24 399 aaPredicted RBP16.65■□□□□ 0.26
CUX1-215ENST00000556210 SNAP25P60880 206 aa16.65■□□□□ 0.26
CUX1-215ENST00000556210 LINC00116Q8NCU8 138 aa16.65■□□□□ 0.26
CUX1-215ENST00000556210 SNX29Q8TEQ0 813 aa16.65■□□□□ 0.26
CUX1-215ENST00000556210 FAM217BQ9NTX9 383 aaPredicted RBP16.65■□□□□ 0.26
CUX1-215ENST00000556210 HLA-DOAP06340 250 aa16.65■□□□□ 0.26
CUX1-215ENST00000556210 AKAP12Q02952 1782 aa16.65■□□□□ 0.26
CUX1-215ENST00000556210 B4DLN1 442 aa16.65■□□□□ 0.26
CUX1-215ENST00000556210 CHMP2AO43633 222 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms