RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 HOMER3Q9NSC5 361 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 RNF216Q9NWF9 866 aaPredicted RBP11.83□□□□□ -0.52
ACTN1-216ENST00000556083 NFE2L3Q9Y4A8 694 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 TACC3Q9Y6A5 838 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 A0A1W2PQ27 194 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 A0A1W2PQ64 194 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 A0A1W2PQD8 194 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 TLDC2A0PJX2 215 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 GTPBP6O43824 516 aaPredicted RBP11.83□□□□□ -0.52
ACTN1-216ENST00000556083 PFKFB2O60825 505 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 BBOX1O75936 387 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 CMA1P23946 247 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 ZNF75DP51815 510 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 YARSP54577 528 aaKnown RBP11.83□□□□□ -0.52
ACTN1-216ENST00000556083 CDC37Q16543 378 aaPredicted RBP11.83□□□□□ -0.52
ACTN1-216ENST00000556083 MYSM1Q5VVJ2 828 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 PEX26Q7Z412 305 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 RSPH3Q86UC2 560 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 ZC3H15Q8WU90 426 aaKnown RBP11.83□□□□□ -0.52
ACTN1-216ENST00000556083 HAUS8Q9BT25 410 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 HESX1Q9UBX0 185 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 STK17AQ9UEE5 414 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 IPO11Q9UI26 975 aaKnown RBP11.83□□□□□ -0.52
ACTN1-216ENST00000556083 ZBTB21Q9ULJ3 1066 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 ZMYM6O95789 1325 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 MED23Q9ULK4 1368 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 A0A1B0GUA9 196 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 SEPT6Q14141 434 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 GBP6Q6ZN66 633 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 NEK8Q86SG6 692 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 MAP7D3Q8IWC1 876 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 TEKT3Q9BXF9 490 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 GJA3Q9Y6H8 435 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 PALM3A6NDB9 673 aaPredicted RBP11.83□□□□□ -0.52
ACTN1-216ENST00000556083 ZNF233A6NK53 670 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 RNF40O75150 1001 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 KRT10P13645 584 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 HSPA6P17066 643 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 SEMA3FQ13275 785 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 SURF1Q15526 300 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 TSNAXIP1Q2TAA8 658 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 NOSTRINQ8IVI9 506 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 SUCLG2Q96I99 432 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 ZSCAN10Q96SZ4 725 aaPredicted RBP11.83□□□□□ -0.52
ACTN1-216ENST00000556083 WDR11Q9BZH6 1224 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 NACA2Q9H009 215 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 DHX36Q9H2U1 1008 aaKnown RBP11.83□□□□□ -0.52
ACTN1-216ENST00000556083 RNF14Q9UBS8 474 aa11.83□□□□□ -0.52
ACTN1-216ENST00000556083 USP19O94966 1318 aa11.82□□□□□ -0.52
ACTN1-216ENST00000556083 HHATQ5VTY9 493 aa11.82□□□□□ -0.52
ACTN1-216ENST00000556083 PPP1R21Q6ZMI0 780 aa11.82□□□□□ -0.52
ACTN1-216ENST00000556083 CCDC25Q86WR0 208 aa11.82□□□□□ -0.52
ACTN1-216ENST00000556083 ATP6V0A1Q93050 837 aa11.82□□□□□ -0.52
ACTN1-216ENST00000556083 PSMD1Q99460 953 aa11.82□□□□□ -0.52
ACTN1-216ENST00000556083 DONSONQ9NYP3 566 aa11.82□□□□□ -0.52
ACTN1-216ENST00000556083 ADD3Q9UEY8 706 aaKnown RBP11.82□□□□□ -0.52
ACTN1-216ENST00000556083 ASIC3Q9UHC3 531 aa11.82□□□□□ -0.52
ACTN1-216ENST00000556083 SMCO2A6NFE2 343 aa11.82□□□□□ -0.52
ACTN1-216ENST00000556083 KIF3CO14782 793 aa11.82□□□□□ -0.52
ACTN1-216ENST00000556083 PPIP5K2O43314 1243 aa11.82□□□□□ -0.52
ACTN1-216ENST00000556083 SLC4A8Q2Y0W8 1093 aa11.82□□□□□ -0.52
ACTN1-216ENST00000556083 TMX1Q9H3N1 280 aa11.82□□□□□ -0.52
ACTN1-216ENST00000556083 C1orf112Q9NSG2 853 aa11.82□□□□□ -0.52
ACTN1-216ENST00000556083 FAM8A1Q9UBU6 413 aa11.82□□□□□ -0.52
ACTN1-216ENST00000556083 ARMCX3Q9UH62 379 aaPredicted RBP11.82□□□□□ -0.52
ACTN1-216ENST00000556083 E7EWF7 191 aa11.82□□□□□ -0.52
ACTN1-216ENST00000556083 GCNT3O95395 438 aa11.82□□□□□ -0.52
ACTN1-216ENST00000556083 OR52Z1P0C646 297 aa11.82□□□□□ -0.52
ACTN1-216ENST00000556083 NSMFQ6X4W1 530 aa11.82□□□□□ -0.52
ACTN1-216ENST00000556083 DPH6Q7L8W6 267 aa11.82□□□□□ -0.52
ACTN1-216ENST00000556083 DNAJC10Q8IXB1 793 aa11.82□□□□□ -0.52
ACTN1-216ENST00000556083 CABLES1Q8TDN4 633 aa11.82□□□□□ -0.52
ACTN1-216ENST00000556083 SMCR8Q8TEV9 937 aaPredicted RBP11.82□□□□□ -0.52
ACTN1-216ENST00000556083 VCX3AQ9NNX9 186 aa11.82□□□□□ -0.52
ACTN1-216ENST00000556083 XDHP47989 1333 aa11.81□□□□□ -0.52
ACTN1-216ENST00000556083 EIF3DO15371 548 aaKnown RBP eCLIP11.81□□□□□ -0.52
ACTN1-216ENST00000556083 RLBP1P12271 317 aa11.81□□□□□ -0.52
ACTN1-216ENST00000556083 PHKG2P15735 406 aa11.81□□□□□ -0.52
ACTN1-216ENST00000556083 NELFBQ8WX92 580 aa11.81□□□□□ -0.52
ACTN1-216ENST00000556083 USP40Q9NVE5 1235 aa11.81□□□□□ -0.52
ACTN1-216ENST00000556083 USP21Q9UK80 565 aa11.81□□□□□ -0.52
ACTN1-216ENST00000556083 MYCLP12524 364 aaPredicted RBP11.81□□□□□ -0.52
ACTN1-216ENST00000556083 ASPHQ12797 758 aa11.81□□□□□ -0.52
ACTN1-216ENST00000556083 KARSQ15046 597 aaKnown RBP11.81□□□□□ -0.52
ACTN1-216ENST00000556083 GEN1Q17RS7 908 aa11.81□□□□□ -0.52
ACTN1-216ENST00000556083 SUPT20HL1Q3ZLR7 823 aa11.81□□□□□ -0.52
ACTN1-216ENST00000556083 MFSD14BQ5SR56 506 aa11.81□□□□□ -0.52
ACTN1-216ENST00000556083 UTP14CQ5TAP6 766 aaKnown RBP11.81□□□□□ -0.52
ACTN1-216ENST00000556083 FBXO11Q86XK2 927 aa11.81□□□□□ -0.52
ACTN1-216ENST00000556083 CCDC89Q8N998 374 aa11.81□□□□□ -0.52
ACTN1-216ENST00000556083 MTA3Q9BTC8 594 aa11.81□□□□□ -0.52
ACTN1-216ENST00000556083 RNF26Q9BY78 433 aaPredicted RBP11.81□□□□□ -0.52
ACTN1-216ENST00000556083 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.81□□□□□ -0.52
ACTN1-216ENST00000556083 AATFQ9NY61 560 aaKnown RBP eCLIP11.81□□□□□ -0.52
ACTN1-216ENST00000556083 MAP3K15Q6ZN16 1313 aa11.81□□□□□ -0.52
ACTN1-216ENST00000556083 ERVV-1B6SEH8 477 aa11.81□□□□□ -0.52
ACTN1-216ENST00000556083 TROVE2P10155 538 aaKnown RBP eCLIP11.81□□□□□ -0.52
ACTN1-216ENST00000556083 HSPA8P11142 646 aaKnown RBP11.81□□□□□ -0.52
ACTN1-216ENST00000556083 NFKBIAP25963 317 aa11.81□□□□□ -0.52
ACTN1-216ENST00000556083 SDCCAG8Q86SQ7 713 aaPredicted RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms