RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 CSF2RAP15509 400 aa11.78□□□□□ -0.52
SCFD1-215ENST00000555259 DSG3P32926 999 aa11.78□□□□□ -0.52
SCFD1-215ENST00000555259 RAB30Q15771 203 aa11.78□□□□□ -0.52
SCFD1-215ENST00000555259 TTC39AQ5SRH9 613 aa11.78□□□□□ -0.52
SCFD1-215ENST00000555259 PSRC1Q6PGN9 363 aaPredicted RBP11.78□□□□□ -0.52
SCFD1-215ENST00000555259 ZNF365Q70YC5 407 aa11.78□□□□□ -0.52
SCFD1-215ENST00000555259 TTC6Q86TZ1 520 aa11.78□□□□□ -0.52
SCFD1-215ENST00000555259 MIGA1Q8NAN2 632 aa11.78□□□□□ -0.52
SCFD1-215ENST00000555259 LRFN3Q9BTN0 628 aa11.78□□□□□ -0.52
SCFD1-215ENST00000555259 TSPYL2Q9H2G4 693 aaPredicted RBP11.78□□□□□ -0.52
SCFD1-215ENST00000555259 PIH1D3Q9NQM4 214 aaKnown RBP11.78□□□□□ -0.52
SCFD1-215ENST00000555259 MSRAQ9UJ68 235 aa11.78□□□□□ -0.52
SCFD1-215ENST00000555259 NOB1Q9ULX3 412 aaKnown RBP11.78□□□□□ -0.52
SCFD1-215ENST00000555259 MOXD2PA6NHM9 499 aa11.77□□□□□ -0.53
SCFD1-215ENST00000555259 PGK2P07205 417 aa11.77□□□□□ -0.53
SCFD1-215ENST00000555259 ACRP10323 421 aa11.77□□□□□ -0.53
SCFD1-215ENST00000555259 CYP7A1P22680 504 aa11.77□□□□□ -0.53
SCFD1-215ENST00000555259 PLCD1P51178 756 aa11.77□□□□□ -0.53
SCFD1-215ENST00000555259 TFF2Q03403 129 aa11.77□□□□□ -0.53
SCFD1-215ENST00000555259 CCDC158Q5M9N0 1113 aa11.77□□□□□ -0.53
SCFD1-215ENST00000555259 FAM9BQ8IZU0 186 aa11.77□□□□□ -0.53
SCFD1-215ENST00000555259 TMEM199Q8N511 208 aa11.77□□□□□ -0.53
SCFD1-215ENST00000555259 ATG4CQ96DT6 458 aa11.77□□□□□ -0.53
SCFD1-215ENST00000555259 API5Q9BZZ5 524 aaKnown RBP11.77□□□□□ -0.53
SCFD1-215ENST00000555259 SLC28A3Q9HAS3 691 aa11.77□□□□□ -0.53
SCFD1-215ENST00000555259 MROH7Q68CQ1 1323 aa11.77□□□□□ -0.53
SCFD1-215ENST00000555259 SYNRGQ9UMZ2 1314 aa11.77□□□□□ -0.53
SCFD1-215ENST00000555259 MYO5AQ9Y4I1 1855 aaKnown RBP11.77□□□□□ -0.53
SCFD1-215ENST00000555259 TRANK1O15050 2925 aa11.77□□□□□ -0.53
SCFD1-215ENST00000555259 FLOT1O75955 427 aa11.76□□□□□ -0.53
SCFD1-215ENST00000555259 SLC25A27O95847 323 aa11.76□□□□□ -0.53
SCFD1-215ENST00000555259 GNAI3P08754 354 aa11.76□□□□□ -0.53
SCFD1-215ENST00000555259 ZAP70P43403 619 aa11.76□□□□□ -0.53
SCFD1-215ENST00000555259 KCNQ1P51787 676 aa11.76□□□□□ -0.53
SCFD1-215ENST00000555259 G3BP1Q13283 466 aaKnown RBP eCLIP11.76□□□□□ -0.53
SCFD1-215ENST00000555259 TMEM132BQ14DG7 1078 aa11.76□□□□□ -0.53
SCFD1-215ENST00000555259 KCNA10Q16322 511 aa11.76□□□□□ -0.53
SCFD1-215ENST00000555259 AAK1Q2M2I8 961 aa11.76□□□□□ -0.53
SCFD1-215ENST00000555259 ZNF792Q3KQV3 632 aa11.76□□□□□ -0.53
SCFD1-215ENST00000555259 KIAA1755Q5JYT7 1200 aa11.76□□□□□ -0.53
SCFD1-215ENST00000555259 CCSAPQ6IQ19 270 aaPredicted RBP11.76□□□□□ -0.53
SCFD1-215ENST00000555259 CERS3Q8IU89 383 aa11.76□□□□□ -0.53
SCFD1-215ENST00000555259 KLHDC9Q8NEP7 349 aa11.76□□□□□ -0.53
SCFD1-215ENST00000555259 CDCA7LQ96GN5 454 aa11.76□□□□□ -0.53
SCFD1-215ENST00000555259 MMP19Q99542 508 aa11.76□□□□□ -0.53
SCFD1-215ENST00000555259 DBNDD2Q9BQY9 259 aa11.76□□□□□ -0.53
SCFD1-215ENST00000555259 NKX2-4Q9H2Z4 354 aa11.76□□□□□ -0.53
SCFD1-215ENST00000555259 EPHX3Q9H6B9 360 aa11.76□□□□□ -0.53
SCFD1-215ENST00000555259 DIS3Q9Y2L1 958 aaKnown RBP11.76□□□□□ -0.53
SCFD1-215ENST00000555259 ZNFX1Q9P2E3 1918 aaKnown RBP11.76□□□□□ -0.53
SCFD1-215ENST00000555259 ELP1O95163 1332 aa11.75□□□□□ -0.53
SCFD1-215ENST00000555259 CDK7P50613 346 aa11.75□□□□□ -0.53
SCFD1-215ENST00000555259 GABPAQ06546 454 aa11.75□□□□□ -0.53
SCFD1-215ENST00000555259 HERVK_113Q902F9 699 aa11.75□□□□□ -0.53
SCFD1-215ENST00000555259 ZNF512BQ96KM6 892 aaPredicted RBP11.75□□□□□ -0.53
SCFD1-215ENST00000555259 GLT1D1Q96MS3 346 aa11.75□□□□□ -0.53
SCFD1-215ENST00000555259 CNPY2Q9Y2B0 182 aa11.75□□□□□ -0.53
SCFD1-215ENST00000555259 YBX2Q9Y2T7 364 aaKnown RBP11.75□□□□□ -0.53
SCFD1-215ENST00000555259 MUC6Q6W4X9 2439 aa11.75□□□□□ -0.53
SCFD1-215ENST00000555259 PNMA6EA0A0J9YXQ4 647 aa11.75□□□□□ -0.53
SCFD1-215ENST00000555259 MYADML2A6NDP7 307 aa11.75□□□□□ -0.53
SCFD1-215ENST00000555259 APBB1O00213 710 aa11.75□□□□□ -0.53
SCFD1-215ENST00000555259 MPHOSPH10O00566 681 aaKnown RBP11.75□□□□□ -0.53
SCFD1-215ENST00000555259 IDH1O75874 414 aaKnown RBP11.75□□□□□ -0.53
SCFD1-215ENST00000555259 SLFN5Q08AF3 891 aa11.75□□□□□ -0.53
SCFD1-215ENST00000555259 KCTD2Q14681 263 aa11.75□□□□□ -0.53
SCFD1-215ENST00000555259 TNNI3KQ59H18 835 aa11.75□□□□□ -0.53
SCFD1-215ENST00000555259 SAMD1Q6SPF0 538 aaPredicted RBP11.75□□□□□ -0.53
SCFD1-215ENST00000555259 SPICE1Q8N0Z3 855 aa11.75□□□□□ -0.53
SCFD1-215ENST00000555259 MICALL1Q8N3F8 863 aa11.75□□□□□ -0.53
SCFD1-215ENST00000555259 PPP1R12CQ9BZL4 782 aa11.75□□□□□ -0.53
SCFD1-215ENST00000555259 GPR108Q9NPR9 543 aa11.75□□□□□ -0.53
SCFD1-215ENST00000555259 FPGT-TNNI3KV9GXZ4 949 aa11.75□□□□□ -0.53
SCFD1-215ENST00000555259 ERC2O15083 957 aa11.74□□□□□ -0.53
SCFD1-215ENST00000555259 TMEM31Q5JXX7 168 aa11.74□□□□□ -0.53
SCFD1-215ENST00000555259 FAM126BQ8IXS8 530 aa11.74□□□□□ -0.53
SCFD1-215ENST00000555259 MAGEB6Q8N7X4 407 aa11.74□□□□□ -0.53
SCFD1-215ENST00000555259 MTIF3Q9H2K0 278 aaKnown RBP11.74□□□□□ -0.53
SCFD1-215ENST00000555259 IL23AQ9NPF7 189 aa11.74□□□□□ -0.53
SCFD1-215ENST00000555259 FAM184BQ9ULE4 1060 aa11.74□□□□□ -0.53
SCFD1-215ENST00000555259 GBF1Q92538 1859 aa11.73□□□□□ -0.53
SCFD1-215ENST00000555259 ARVCFO00192 962 aa11.73□□□□□ -0.53
SCFD1-215ENST00000555259 POLR3DP05423 398 aaPredicted RBP11.73□□□□□ -0.53
SCFD1-215ENST00000555259 ASGR1P07306 291 aa11.73□□□□□ -0.53
SCFD1-215ENST00000555259 CST5P28325 142 aaPredicted RBP11.73□□□□□ -0.53
SCFD1-215ENST00000555259 CYP2C18P33260 490 aa11.73□□□□□ -0.53
SCFD1-215ENST00000555259 IRX5P78411 483 aaPredicted RBP11.73□□□□□ -0.53
SCFD1-215ENST00000555259 EVX2Q03828 476 aa11.73□□□□□ -0.53
SCFD1-215ENST00000555259 SKIV2LQ15477 1246 aaKnown RBP11.73□□□□□ -0.53
SCFD1-215ENST00000555259 RIOX2Q8IUF8 465 aa11.73□□□□□ -0.53
SCFD1-215ENST00000555259 ADAMTS5Q9UNA0 930 aa11.73□□□□□ -0.53
SCFD1-215ENST00000555259 PARP14Q460N5 1801 aa11.72□□□□□ -0.53
SCFD1-215ENST00000555259 PRRC2BQ5JSZ5 2229 aaKnown RBP11.72□□□□□ -0.53
SCFD1-215ENST00000555259 A0A0U1RQG5 324 aaPredicted RBP11.72□□□□□ -0.53
SCFD1-215ENST00000555259 DUSP11O75319 330 aaKnown RBP11.72□□□□□ -0.53
SCFD1-215ENST00000555259 FGBP02675 491 aa11.72□□□□□ -0.53
SCFD1-215ENST00000555259 PPP2R2DQ66LE6 453 aa11.72□□□□□ -0.53
SCFD1-215ENST00000555259 TMEM179Q6ZVK1 233 aa11.72□□□□□ -0.53
SCFD1-215ENST00000555259 SIAH1Q8IUQ4 282 aa11.72□□□□□ -0.53
SCFD1-215ENST00000555259 MSL3Q8N5Y2 521 aaKnown RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms