RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 VCAM1P19320 739 aa11.9□□□□□ -0.5
SYNE2-215ENST00000554997 KIF5BP33176 963 aa11.9□□□□□ -0.5
SYNE2-215ENST00000554997 MAP2K2P36507 400 aa11.9□□□□□ -0.5
SYNE2-215ENST00000554997 ZNF543Q08ER8 600 aa11.9□□□□□ -0.5
SYNE2-215ENST00000554997 USP17L24Q0WX57 530 aa11.9□□□□□ -0.5
SYNE2-215ENST00000554997 MKRN3Q13064 507 aaKnown RBP11.9□□□□□ -0.5
SYNE2-215ENST00000554997 GRM4Q14833 912 aa11.9□□□□□ -0.5
SYNE2-215ENST00000554997 GPATCH4Q5T3I0 446 aaKnown RBP11.9□□□□□ -0.5
SYNE2-215ENST00000554997 GPAT2Q6NUI2 795 aa11.9□□□□□ -0.5
SYNE2-215ENST00000554997 CATSPERGQ6ZRH7 1159 aa11.9□□□□□ -0.5
SYNE2-215ENST00000554997 PAXIP1Q6ZW49 1069 aaPredicted RBP11.9□□□□□ -0.5
SYNE2-215ENST00000554997 CTCFLQ8NI51 663 aaPredicted RBP11.9□□□□□ -0.5
SYNE2-215ENST00000554997 NUP133Q8WUM0 1156 aa11.9□□□□□ -0.5
SYNE2-215ENST00000554997 SNX21Q969T3 373 aa11.9□□□□□ -0.5
SYNE2-215ENST00000554997 CHMP4CQ96CF2 233 aa11.9□□□□□ -0.5
SYNE2-215ENST00000554997 CAPNS2Q96L46 248 aa11.9□□□□□ -0.5
SYNE2-215ENST00000554997 MAD2L2Q9UI95 211 aa11.9□□□□□ -0.5
SYNE2-215ENST00000554997 AGTPBP1Q9UPW5 1226 aa11.9□□□□□ -0.5
SYNE2-215ENST00000554997 HPS5Q9UPZ3 1129 aa11.9□□□□□ -0.5
SYNE2-215ENST00000554997 GREB1LQ9C091 1923 aaPredicted RBP11.9□□□□□ -0.51
SYNE2-215ENST00000554997 WDR33Q9C0J8 1336 aaKnown RBP11.89□□□□□ -0.51
SYNE2-215ENST00000554997 CCL15-CCL14A0A0B4J2E2 113 aa11.89□□□□□ -0.51
SYNE2-215ENST00000554997 CCDC196A0A1B0GTZ2 297 aa11.89□□□□□ -0.51
SYNE2-215ENST00000554997 PFKFB2O60825 505 aa11.89□□□□□ -0.51
SYNE2-215ENST00000554997 SMARCA1P28370 1054 aa11.89□□□□□ -0.51
SYNE2-215ENST00000554997 GNAQP50148 359 aa11.89□□□□□ -0.51
SYNE2-215ENST00000554997 HTRA3P83110 453 aa11.89□□□□□ -0.51
SYNE2-215ENST00000554997 KIF23Q02241 960 aaPredicted RBP11.89□□□□□ -0.51
SYNE2-215ENST00000554997 PABPC4Q13310 644 aaKnown RBP eCLIP11.89□□□□□ -0.51
SYNE2-215ENST00000554997 DGKZQ13574 1117 aa11.89□□□□□ -0.51
SYNE2-215ENST00000554997 COG2Q14746 738 aa11.89□□□□□ -0.51
SYNE2-215ENST00000554997 CCL15Q16663 113 aa11.89□□□□□ -0.51
SYNE2-215ENST00000554997 ME3Q16798 604 aa11.89□□□□□ -0.51
SYNE2-215ENST00000554997 ASPRV1Q53RT3 343 aa11.89□□□□□ -0.51
SYNE2-215ENST00000554997 FAM83BQ5T0W9 1011 aa11.89□□□□□ -0.51
SYNE2-215ENST00000554997 BTNL9Q6UXG8 535 aa11.89□□□□□ -0.51
SYNE2-215ENST00000554997 GADL1Q6ZQY3 521 aa11.89□□□□□ -0.51
SYNE2-215ENST00000554997 ANKRD23Q86SG2 305 aa11.89□□□□□ -0.51
SYNE2-215ENST00000554997 CHURC1Q8WUH1 139 aa11.89□□□□□ -0.51
SYNE2-215ENST00000554997 BRI3BPQ8WY22 251 aa11.89□□□□□ -0.51
SYNE2-215ENST00000554997 PTPN18Q99952 460 aa11.89□□□□□ -0.51
SYNE2-215ENST00000554997 LZTS2Q9BRK4 669 aa11.89□□□□□ -0.51
SYNE2-215ENST00000554997 MYL10Q9BUA6 226 aa11.89□□□□□ -0.51
SYNE2-215ENST00000554997 RPAP3Q9H6T3 665 aaPredicted RBP11.89□□□□□ -0.51
SYNE2-215ENST00000554997 FAM217BQ9NTX9 383 aaPredicted RBP11.89□□□□□ -0.51
SYNE2-215ENST00000554997 RBM28Q9NW13 759 aaKnown RBP11.89□□□□□ -0.51
SYNE2-215ENST00000554997 HOXC10Q9NYD6 342 aa11.89□□□□□ -0.51
SYNE2-215ENST00000554997 FEM1BQ9UK73 627 aa11.89□□□□□ -0.51
SYNE2-215ENST00000554997 NAP1L2Q9ULW6 460 aaPredicted RBP11.89□□□□□ -0.51
SYNE2-215ENST00000554997 MTMR7Q9Y216 660 aa11.89□□□□□ -0.51
SYNE2-215ENST00000554997 SLC45A1Q9Y2W3 748 aa11.89□□□□□ -0.51
SYNE2-215ENST00000554997 GOLGA8BA8MQT2 603 aa11.88□□□□□ -0.51
SYNE2-215ENST00000554997 BTBD19C9JJ37 291 aa11.88□□□□□ -0.51
SYNE2-215ENST00000554997 TMEM232C9JQI7 657 aa11.88□□□□□ -0.51
SYNE2-215ENST00000554997 KLRF2D3W0D1 207 aa11.88□□□□□ -0.51
SYNE2-215ENST00000554997 DHX16O60231 1041 aaKnown RBP11.88□□□□□ -0.51
SYNE2-215ENST00000554997 CD2BP2O95400 341 aaKnown RBP11.88□□□□□ -0.51
SYNE2-215ENST00000554997 GOLGA8HP0CJ92 632 aa11.88□□□□□ -0.51
SYNE2-215ENST00000554997 ADD1P35611 737 aaKnown RBP11.88□□□□□ -0.51
SYNE2-215ENST00000554997 VEGFBP49765 207 aa11.88□□□□□ -0.51
SYNE2-215ENST00000554997 METAP2P50579 478 aaKnown RBP eCLIP11.88□□□□□ -0.51
SYNE2-215ENST00000554997 SREBF2Q12772 1141 aa11.88□□□□□ -0.51
SYNE2-215ENST00000554997 TREML2Q5T2D2 321 aa11.88□□□□□ -0.51
SYNE2-215ENST00000554997 OTUD7BQ6GQQ9 843 aa11.88□□□□□ -0.51
SYNE2-215ENST00000554997 KCTD1Q719H9 257 aa11.88□□□□□ -0.51
SYNE2-215ENST00000554997 FAM160B2Q86V87 743 aa11.88□□□□□ -0.51
SYNE2-215ENST00000554997 STAG2Q8N3U4 1231 aa11.88□□□□□ -0.51
SYNE2-215ENST00000554997 PRPF38AQ8NAV1 312 aaKnown RBP11.88□□□□□ -0.51
SYNE2-215ENST00000554997 NUP88Q99567 741 aaPredicted RBP11.88□□□□□ -0.51
SYNE2-215ENST00000554997 SLKQ9H2G2 1235 aaPredicted RBP11.88□□□□□ -0.51
SYNE2-215ENST00000554997 ZCCHC17Q9NP64 241 aaKnown RBP11.88□□□□□ -0.51
SYNE2-215ENST00000554997 GPCPD1Q9NPB8 672 aa11.88□□□□□ -0.51
SYNE2-215ENST00000554997 SH2B1Q9NRF2 756 aaPredicted RBP11.88□□□□□ -0.51
SYNE2-215ENST00000554997 DOCK1Q14185 1865 aa11.88□□□□□ -0.51
SYNE2-215ENST00000554997 FRMPD2Q68DX3 1309 aaPredicted RBP11.87□□□□□ -0.51
SYNE2-215ENST00000554997 GOLGA8AA7E2F4 631 aa11.87□□□□□ -0.51
SYNE2-215ENST00000554997 PDHXO00330 501 aa11.87□□□□□ -0.51
SYNE2-215ENST00000554997 RXRAP19793 462 aa11.87□□□□□ -0.51
SYNE2-215ENST00000554997 OSBPP22059 807 aa11.87□□□□□ -0.51
SYNE2-215ENST00000554997 CDC27P30260 824 aa11.87□□□□□ -0.51
SYNE2-215ENST00000554997 STAT2P52630 851 aa11.87□□□□□ -0.51
SYNE2-215ENST00000554997 CCT2P78371 535 aaKnown RBP11.87□□□□□ -0.51
SYNE2-215ENST00000554997 GRM1Q13255 1194 aa11.87□□□□□ -0.51
SYNE2-215ENST00000554997 RTN1Q16799 776 aa11.87□□□□□ -0.51
SYNE2-215ENST00000554997 CCDC96Q2M329 555 aa11.87□□□□□ -0.51
SYNE2-215ENST00000554997 TTBK2Q6IQ55 1244 aa11.87□□□□□ -0.51
SYNE2-215ENST00000554997 NOL8Q76FK4 1167 aaKnown RBP11.87□□□□□ -0.51
SYNE2-215ENST00000554997 MICU3Q86XE3 530 aa11.87□□□□□ -0.51
SYNE2-215ENST00000554997 RAB11FIP4Q86YS3 637 aa11.87□□□□□ -0.51
SYNE2-215ENST00000554997 IFNL1Q8IU54 200 aa11.87□□□□□ -0.51
SYNE2-215ENST00000554997 CCDC144CPQ8IYA2 1237 aa11.87□□□□□ -0.51
SYNE2-215ENST00000554997 TMX3Q96JJ7 454 aa11.87□□□□□ -0.51
SYNE2-215ENST00000554997 ZIC5Q96T25 663 aa11.87□□□□□ -0.51
SYNE2-215ENST00000554997 TANGO6Q9C0B7 1094 aa11.87□□□□□ -0.51
SYNE2-215ENST00000554997 UBA5Q9GZZ9 404 aa11.87□□□□□ -0.51
SYNE2-215ENST00000554997 ADAMTS5Q9UNA0 930 aa11.87□□□□□ -0.51
SYNE2-215ENST00000554997 AOC2O75106 756 aa11.86□□□□□ -0.51
SYNE2-215ENST00000554997 FLOT1O75955 427 aa11.86□□□□□ -0.51
SYNE2-215ENST00000554997 FDX1P10109 184 aa11.86□□□□□ -0.51
SYNE2-215ENST00000554997 DSG3P32926 999 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms