RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 FAM83BQ5T0W9 1011 aa12.21□□□□□ -0.45
CCDC88C-206ENST00000553437 TTC22Q5TAA0 569 aa12.21□□□□□ -0.45
CCDC88C-206ENST00000553437 CWC27Q6UX04 472 aaKnown RBP12.21□□□□□ -0.45
CCDC88C-206ENST00000553437 SOCS4Q8WXH5 440 aa12.21□□□□□ -0.45
CCDC88C-206ENST00000553437 SHISA4Q96DD7 197 aa12.21□□□□□ -0.45
CCDC88C-206ENST00000553437 NUDT12Q9BQG2 462 aa12.21□□□□□ -0.45
CCDC88C-206ENST00000553437 MOV10L1Q9BXT6 1211 aaKnown RBP12.21□□□□□ -0.45
CCDC88C-206ENST00000553437 RNF208Q9H0X6 261 aa12.21□□□□□ -0.45
CCDC88C-206ENST00000553437 UNC93B1Q9H1C4 597 aa12.21□□□□□ -0.45
CCDC88C-206ENST00000553437 SYNPO2Q9UMS6 1093 aa12.21□□□□□ -0.45
CCDC88C-206ENST00000553437 ORC4O43929 436 aa12.2□□□□□ -0.46
CCDC88C-206ENST00000553437 TTLL1O95922 423 aa12.2□□□□□ -0.46
CCDC88C-206ENST00000553437 NDUFB10O96000 172 aa12.2□□□□□ -0.46
CCDC88C-206ENST00000553437 PTPREP23469 700 aa12.2□□□□□ -0.46
CCDC88C-206ENST00000553437 GJA8P48165 433 aa12.2□□□□□ -0.46
CCDC88C-206ENST00000553437 NOVP48745 357 aa12.2□□□□□ -0.46
CCDC88C-206ENST00000553437 TRIM32Q13049 653 aa12.2□□□□□ -0.46
CCDC88C-206ENST00000553437 CCAR1Q8IX12 1150 aaKnown RBP12.2□□□□□ -0.46
CCDC88C-206ENST00000553437 MB21D1Q8N884 522 aa12.2□□□□□ -0.46
CCDC88C-206ENST00000553437 TRIB2Q92519 343 aa12.2□□□□□ -0.46
CCDC88C-206ENST00000553437 NUP88Q99567 741 aaPredicted RBP12.2□□□□□ -0.46
CCDC88C-206ENST00000553437 NBPF3Q9H094 633 aa12.2□□□□□ -0.46
CCDC88C-206ENST00000553437 SPATC1LQ9H0A9 340 aa12.2□□□□□ -0.46
CCDC88C-206ENST00000553437 IL17RBQ9NRM6 502 aa12.2□□□□□ -0.46
CCDC88C-206ENST00000553437 DIAPH3Q9NSV4 1193 aa12.2□□□□□ -0.46
CCDC88C-206ENST00000553437 SLC15A5A6NIM6 579 aa12.19□□□□□ -0.46
CCDC88C-206ENST00000553437 HIP1O00291 1037 aa12.19□□□□□ -0.46
CCDC88C-206ENST00000553437 HMGCRP04035 888 aa12.19□□□□□ -0.46
CCDC88C-206ENST00000553437 MFAP1P55081 439 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-206ENST00000553437 MAP2K5Q13163 448 aa12.19□□□□□ -0.46
CCDC88C-206ENST00000553437 GRB14Q14449 540 aa12.19□□□□□ -0.46
CCDC88C-206ENST00000553437 TMEM132BQ14DG7 1078 aa12.19□□□□□ -0.46
CCDC88C-206ENST00000553437 MAP3K21Q5TCX8 1036 aa12.19□□□□□ -0.46
CCDC88C-206ENST00000553437 LRRC47Q8N1G4 583 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-206ENST00000553437 GMCL1P1Q8NEA9 526 aa12.19□□□□□ -0.46
CCDC88C-206ENST00000553437 SHCBP1Q8NEM2 672 aa12.19□□□□□ -0.46
CCDC88C-206ENST00000553437 REPS2Q8NFH8 660 aa12.19□□□□□ -0.46
CCDC88C-206ENST00000553437 NKX2-3Q8TAU0 364 aa12.19□□□□□ -0.46
CCDC88C-206ENST00000553437 IL25Q9H293 177 aa12.19□□□□□ -0.46
CCDC88C-206ENST00000553437 PAK6Q9NQU5 681 aaPredicted RBP12.19□□□□□ -0.46
CCDC88C-206ENST00000553437 PPP1R9AQ9ULJ8 1098 aa12.19□□□□□ -0.46
CCDC88C-206ENST00000553437 GREB1LQ9C091 1923 aaPredicted RBP12.19□□□□□ -0.46
CCDC88C-206ENST00000553437 TSPY2A6NKD2 308 aa12.18□□□□□ -0.46
CCDC88C-206ENST00000553437 VWA5AO00534 786 aa12.18□□□□□ -0.46
CCDC88C-206ENST00000553437 RAD21O60216 631 aa12.18□□□□□ -0.46
CCDC88C-206ENST00000553437 NMT2O60551 498 aa12.18□□□□□ -0.46
CCDC88C-206ENST00000553437 IGHA2P01877 340 aa12.18□□□□□ -0.46
CCDC88C-206ENST00000553437 HOXC6P09630 235 aa12.18□□□□□ -0.46
CCDC88C-206ENST00000553437 ERCC3P19447 782 aa12.18□□□□□ -0.46
CCDC88C-206ENST00000553437 RGS2P41220 211 aa12.18□□□□□ -0.46
CCDC88C-206ENST00000553437 HAND2P61296 217 aa12.18□□□□□ -0.46
CCDC88C-206ENST00000553437 CCL14Q16627 93 aa12.18□□□□□ -0.46
CCDC88C-206ENST00000553437 UBE2Q1Q7Z7E8 422 aa12.18□□□□□ -0.46
CCDC88C-206ENST00000553437 TBC1D10CQ8IV04 446 aa12.18□□□□□ -0.46
CCDC88C-206ENST00000553437 U2AF1L4Q8WU68 220 aaKnown RBP12.18□□□□□ -0.46
CCDC88C-206ENST00000553437 APBA2Q99767 749 aa12.18□□□□□ -0.46
CCDC88C-206ENST00000553437 CUL9Q8IWT3 2517 aa12.17□□□□□ -0.46
CCDC88C-206ENST00000553437 KIAA0100Q14667 2235 aaKnown RBP12.17□□□□□ -0.46
CCDC88C-206ENST00000553437 STRNO43815 780 aa12.17□□□□□ -0.46
CCDC88C-206ENST00000553437 RANBP6O60518 1105 aaKnown RBP12.17□□□□□ -0.46
CCDC88C-206ENST00000553437 SGPL1O95470 568 aa12.17□□□□□ -0.46
CCDC88C-206ENST00000553437 WDR78Q5VTH9 848 aa12.17□□□□□ -0.46
CCDC88C-206ENST00000553437 SLFN13Q68D06 897 aa12.17□□□□□ -0.46
CCDC88C-206ENST00000553437 SAMD1Q6SPF0 538 aaPredicted RBP12.17□□□□□ -0.46
CCDC88C-206ENST00000553437 RIOX2Q8IUF8 465 aa12.17□□□□□ -0.46
CCDC88C-206ENST00000553437 TRMT44Q8IYL2 757 aaKnown RBP12.17□□□□□ -0.46
CCDC88C-206ENST00000553437 NPLOC4Q8TAT6 608 aa12.17□□□□□ -0.46
CCDC88C-206ENST00000553437 STAG1Q8WVM7 1258 aa12.17□□□□□ -0.46
CCDC88C-206ENST00000553437 DEFB118Q96PH6 123 aa12.17□□□□□ -0.46
CCDC88C-206ENST00000553437 SLF1Q9BQI6 1058 aa12.17□□□□□ -0.46
CCDC88C-206ENST00000553437 DSCC1Q9BVC3 393 aa12.17□□□□□ -0.46
CCDC88C-206ENST00000553437 CRISPLD2Q9H0B8 497 aa12.17□□□□□ -0.46
CCDC88C-206ENST00000553437 MROH8Q9H579 483 aa12.17□□□□□ -0.46
CCDC88C-206ENST00000553437 FLRT1Q9NZU1 646 aa12.17□□□□□ -0.46
CCDC88C-206ENST00000553437 ZNF214Q9UL59 606 aaPredicted RBP12.17□□□□□ -0.46
CCDC88C-206ENST00000553437 IVNS1ABPQ9Y6Y0 642 aa12.17□□□□□ -0.46
CCDC88C-206ENST00000553437 MGAMO43451 1857 aa12.17□□□□□ -0.46
CCDC88C-206ENST00000553437 RPTORQ8N122 1335 aa12.16□□□□□ -0.46
CCDC88C-206ENST00000553437 RLFQ13129 1914 aa12.16□□□□□ -0.46
CCDC88C-206ENST00000553437 COBLO75128 1261 aa12.16□□□□□ -0.46
CCDC88C-206ENST00000553437 PCP11498 1178 aaKnown RBP12.16□□□□□ -0.46
CCDC88C-206ENST00000553437 ZKSCAN1P17029 563 aaPredicted RBP12.16□□□□□ -0.46
CCDC88C-206ENST00000553437 STAT3P40763 770 aa12.16□□□□□ -0.46
CCDC88C-206ENST00000553437 CACNB2Q08289 660 aaPredicted RBP12.16□□□□□ -0.46
CCDC88C-206ENST00000553437 PLS1Q14651 629 aa12.16□□□□□ -0.46
CCDC88C-206ENST00000553437 PPP4R3BQ5MIZ7 849 aa12.16□□□□□ -0.46
CCDC88C-206ENST00000553437 AKNAD1Q5T1N1 836 aa12.16□□□□□ -0.46
CCDC88C-206ENST00000553437 ABRAQ8N0Z2 381 aa12.16□□□□□ -0.46
CCDC88C-206ENST00000553437 PRPF38AQ8NAV1 312 aaKnown RBP12.16□□□□□ -0.46
CCDC88C-206ENST00000553437 GMCL1Q96IK5 515 aa12.16□□□□□ -0.46
CCDC88C-206ENST00000553437 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.16□□□□□ -0.46
CCDC88C-206ENST00000553437 CWC22Q9HCG8 908 aaKnown RBP12.16□□□□□ -0.46
CCDC88C-206ENST00000553437 TCP11L1Q9NUJ3 509 aa12.16□□□□□ -0.46
CCDC88C-206ENST00000553437 STX8Q9UNK0 236 aa12.16□□□□□ -0.46
CCDC88C-206ENST00000553437 SLC25A27O95847 323 aa12.15□□□□□ -0.46
CCDC88C-206ENST00000553437 BMP3P12645 472 aa12.15□□□□□ -0.46
CCDC88C-206ENST00000553437 PRKAR2AP13861 404 aaKnown RBP12.15□□□□□ -0.46
CCDC88C-206ENST00000553437 MCCP23508 829 aa12.15□□□□□ -0.46
CCDC88C-206ENST00000553437 CHMLP26374 656 aa12.15□□□□□ -0.46
CCDC88C-206ENST00000553437 ADORA2AP29274 412 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms