RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 ELNP15502 786 aa8.54□□□□□ -1.04
LIMA1-210ENST00000552045 TRIM28Q13263 835 aaKnown RBP8.54□□□□□ -1.04
LIMA1-210ENST00000552045 CT47A1Q5JQC4 288 aaPredicted RBP8.54□□□□□ -1.04
LIMA1-210ENST00000552045 LINC00114Q6XXX2 140 aa8.54□□□□□ -1.04
LIMA1-210ENST00000552045 DDX42Q86XP3 938 aaKnown RBP eCLIP8.54□□□□□ -1.04
LIMA1-210ENST00000552045 TMEM130Q8N3G9 435 aa8.54□□□□□ -1.04
LIMA1-210ENST00000552045 NEDD1Q8NHV4 660 aa8.54□□□□□ -1.04
LIMA1-210ENST00000552045 IER2Q9BTL4 223 aa8.54□□□□□ -1.04
LIMA1-210ENST00000552045 INTS7Q9NVH2 962 aaKnown RBP8.54□□□□□ -1.04
LIMA1-210ENST00000552045 MAGEC2Q9UBF1 373 aaPredicted RBP8.54□□□□□ -1.04
LIMA1-210ENST00000552045 G3BP2Q9UN86 482 aaKnown RBP8.54□□□□□ -1.04
LIMA1-210ENST00000552045 MAPRE3Q9UPY8 281 aa8.54□□□□□ -1.04
LIMA1-210ENST00000552045 AKT3Q9Y243 479 aa8.54□□□□□ -1.04
LIMA1-210ENST00000552045 EMC9Q9Y3B6 208 aa8.54□□□□□ -1.04
LIMA1-210ENST00000552045 ITGA4P13612 1032 aa8.53□□□□□ -1.04
LIMA1-210ENST00000552045 SDSP20132 328 aa8.53□□□□□ -1.04
LIMA1-210ENST00000552045 EVA1CP58658 441 aa8.53□□□□□ -1.04
LIMA1-210ENST00000552045 NFKB2Q00653 900 aa8.53□□□□□ -1.04
LIMA1-210ENST00000552045 TRIM61Q5EBN2 209 aa8.53□□□□□ -1.04
LIMA1-210ENST00000552045 LRRTM3Q86VH5 581 aa8.53□□□□□ -1.04
LIMA1-210ENST00000552045 TRIM59Q8IWR1 403 aa8.53□□□□□ -1.04
LIMA1-210ENST00000552045 AGGF1Q8N302 714 aaeCLIP8.53□□□□□ -1.04
LIMA1-210ENST00000552045 ARHGEF39Q8N4T4 335 aa8.53□□□□□ -1.04
LIMA1-210ENST00000552045 UBR7Q8N806 425 aa8.53□□□□□ -1.04
LIMA1-210ENST00000552045 TARS2Q9BW92 718 aaKnown RBP8.53□□□□□ -1.04
LIMA1-210ENST00000552045 ACSS3Q9H6R3 686 aa8.53□□□□□ -1.04
LIMA1-210ENST00000552045 A0A087WZG4 1122 aa8.52□□□□□ -1.05
LIMA1-210ENST00000552045 F8W735 103 aaPredicted RBP8.52□□□□□ -1.05
LIMA1-210ENST00000552045 FAM229AH3BQW9 127 aa8.52□□□□□ -1.05
LIMA1-210ENST00000552045 MAP7Q14244 749 aa8.52□□□□□ -1.05
LIMA1-210ENST00000552045 LETMD1Q6P1Q0 360 aa8.52□□□□□ -1.05
LIMA1-210ENST00000552045 POMZP3Q6PJE2 187 aa8.52□□□□□ -1.05
LIMA1-210ENST00000552045 CDH24Q86UP0 819 aa8.52□□□□□ -1.05
LIMA1-210ENST00000552045 CRACR2BQ8N4Y2 399 aaPredicted RBP8.52□□□□□ -1.05
LIMA1-210ENST00000552045 ADCY4Q8NFM4 1077 aa8.52□□□□□ -1.05
LIMA1-210ENST00000552045 FBXL18Q96ME1 805 aa8.52□□□□□ -1.05
LIMA1-210ENST00000552045 MIPEPQ99797 713 aa8.52□□□□□ -1.05
LIMA1-210ENST00000552045 CHPF2Q9P2E5 772 aa8.52□□□□□ -1.05
LIMA1-210ENST00000552045 C6orf222P0C671 652 aaPredicted RBP8.51□□□□□ -1.05
LIMA1-210ENST00000552045 RAB6AP20340 208 aa8.51□□□□□ -1.05
LIMA1-210ENST00000552045 CCDC181Q5TID7 509 aa8.51□□□□□ -1.05
LIMA1-210ENST00000552045 CNNM4Q6P4Q7 775 aa8.51□□□□□ -1.05
LIMA1-210ENST00000552045 RIN3Q8TB24 985 aa8.51□□□□□ -1.05
LIMA1-210ENST00000552045 RNF141Q8WVD5 230 aa8.51□□□□□ -1.05
LIMA1-210ENST00000552045 BTN2A2Q8WVV5 523 aa8.51□□□□□ -1.05
LIMA1-210ENST00000552045 CEP89Q96ST8 783 aa8.51□□□□□ -1.05
LIMA1-210ENST00000552045 ASPNQ9BXN1 380 aa8.51□□□□□ -1.05
LIMA1-210ENST00000552045 CGGBP1Q9UFW8 167 aaPredicted RBP8.51□□□□□ -1.05
LIMA1-210ENST00000552045 SFMBT1Q9UHJ3 866 aa8.51□□□□□ -1.05
LIMA1-210ENST00000552045 MCM8Q9UJA3 840 aa8.51□□□□□ -1.05
LIMA1-210ENST00000552045 PCDHB12Q9Y5F1 795 aa8.51□□□□□ -1.05
LIMA1-210ENST00000552045 GNB5O14775 395 aa8.5□□□□□ -1.05
LIMA1-210ENST00000552045 DLX3O60479 287 aa8.5□□□□□ -1.05
LIMA1-210ENST00000552045 SLITRK5O94991 958 aa8.5□□□□□ -1.05
LIMA1-210ENST00000552045 ETV3P41162 512 aa8.5□□□□□ -1.05
LIMA1-210ENST00000552045 PREPP48147 710 aa8.5□□□□□ -1.05
LIMA1-210ENST00000552045 ZNF445P59923 1031 aa8.5□□□□□ -1.05
LIMA1-210ENST00000552045 SNRPNP63162 240 aaKnown RBP8.5□□□□□ -1.05
LIMA1-210ENST00000552045 EXOSC10Q01780 885 aaKnown RBP8.5□□□□□ -1.05
LIMA1-210ENST00000552045 NBPF9Q3BBW0 867 aa8.5□□□□□ -1.05
LIMA1-210ENST00000552045 ODR4Q5SWX8 454 aa8.5□□□□□ -1.05
LIMA1-210ENST00000552045 SLC7A14Q8TBB6 771 aa8.5□□□□□ -1.05
LIMA1-210ENST00000552045 JDP2Q8WYK2 163 aa8.5□□□□□ -1.05
LIMA1-210ENST00000552045 DDX1Q92499 740 aaKnown RBP8.5□□□□□ -1.05
LIMA1-210ENST00000552045 TRIM39Q9HCM9 518 aa8.5□□□□□ -1.05
LIMA1-210ENST00000552045 FBXL21Q9UKT6 434 aa8.5□□□□□ -1.05
LIMA1-210ENST00000552045 DAGLAQ9Y4D2 1042 aa8.5□□□□□ -1.05
LIMA1-210ENST00000552045 ALG1L2C9J202 215 aa8.49□□□□□ -1.05
LIMA1-210ENST00000552045 DNAJC8O75937 253 aaPredicted RBP8.49□□□□□ -1.05
LIMA1-210ENST00000552045 ALX3O95076 343 aa8.49□□□□□ -1.05
LIMA1-210ENST00000552045 KCNH1O95259 989 aa8.49□□□□□ -1.05
LIMA1-210ENST00000552045 PMLP29590 882 aa8.49□□□□□ -1.05
LIMA1-210ENST00000552045 USP11P51784 963 aa8.49□□□□□ -1.05
LIMA1-210ENST00000552045 GABREP78334 506 aa8.49□□□□□ -1.05
LIMA1-210ENST00000552045 BRDTQ58F21 947 aaPredicted RBP8.49□□□□□ -1.05
LIMA1-210ENST00000552045 NOL9Q5SY16 702 aaKnown RBP8.49□□□□□ -1.05
LIMA1-210ENST00000552045 AFAP1L2Q8N4X5 818 aa8.49□□□□□ -1.05
LIMA1-210ENST00000552045 GSTCDQ8NEC7 633 aa8.49□□□□□ -1.05
LIMA1-210ENST00000552045 SYTL5Q8TDW5 730 aaPredicted RBP8.49□□□□□ -1.05
LIMA1-210ENST00000552045 BRF1Q92994 677 aa8.49□□□□□ -1.05
LIMA1-210ENST00000552045 PSMG3-AS1Q96PY0 264 aa8.49□□□□□ -1.05
LIMA1-210ENST00000552045 SEMA6CQ9H3T2 930 aa8.49□□□□□ -1.05
LIMA1-210ENST00000552045 NDOR1Q9UHB4 597 aa8.49□□□□□ -1.05
LIMA1-210ENST00000552045 ADAMTS8Q9UP79 889 aa8.49□□□□□ -1.05
LIMA1-210ENST00000552045 FHOD1Q9Y613 1164 aa8.49□□□□□ -1.05
LIMA1-210ENST00000552045 FAM83GA6ND36 823 aa8.48□□□□□ -1.05
LIMA1-210ENST00000552045 FAM181BA6NEQ2 426 aa8.48□□□□□ -1.05
LIMA1-210ENST00000552045 PIK3R2O00459 728 aa8.48□□□□□ -1.05
LIMA1-210ENST00000552045 SART1O43290 800 aaKnown RBP8.48□□□□□ -1.05
LIMA1-210ENST00000552045 EFCAB14O75071 495 aa8.48□□□□□ -1.05
LIMA1-210ENST00000552045 GTF2IRD2BQ6EKJ0 949 aa8.48□□□□□ -1.05
LIMA1-210ENST00000552045 CDPF1Q6NVV7 123 aa8.48□□□□□ -1.05
LIMA1-210ENST00000552045 SHISA2Q6UWI4 295 aa8.48□□□□□ -1.05
LIMA1-210ENST00000552045 GTF2IRD2Q86UP8 949 aa8.48□□□□□ -1.05
LIMA1-210ENST00000552045 PPM1KQ8N3J5 372 aa8.48□□□□□ -1.05
LIMA1-210ENST00000552045 CHMP4AQ9BY43 222 aa8.48□□□□□ -1.05
LIMA1-210ENST00000552045 NOL6Q9H6R4 1146 aaKnown RBP8.48□□□□□ -1.05
LIMA1-210ENST00000552045 SLC52A2Q9HAB3 445 aa8.48□□□□□ -1.05
LIMA1-210ENST00000552045 DIS3Q9Y2L1 958 aaKnown RBP8.48□□□□□ -1.05
LIMA1-210ENST00000552045 GAS2O43903 313 aaKnown RBP8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms