RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 KRT27Q7Z3Y8 459 aa5.53□□□□□ -1.52
LIMA1-206ENST00000550611 PRDM5Q9NQX1 630 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-206ENST00000550611 ADAMTS13Q76LX8 1427 aa5.53□□□□□ -1.52
LIMA1-206ENST00000550611 PIK3R4Q99570 1358 aa5.53□□□□□ -1.52
LIMA1-206ENST00000550611 BRWD3Q6RI45 1802 aa5.53□□□□□ -1.52
LIMA1-206ENST00000550611 DAPK1P53355 1430 aa5.52□□□□□ -1.53
LIMA1-206ENST00000550611 RIMS2Q9UQ26 1411 aa5.52□□□□□ -1.53
LIMA1-206ENST00000550611 LOC105371045A0A1W2PR82 267 aa5.52□□□□□ -1.53
LIMA1-206ENST00000550611 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.52□□□□□ -1.53
LIMA1-206ENST00000550611 CSRNP1Q96S65 589 aa5.52□□□□□ -1.53
LIMA1-206ENST00000550611 ORAI2Q96SN7 254 aa5.52□□□□□ -1.53
LIMA1-206ENST00000550611 CACNA2D2Q9NY47 1150 aa5.52□□□□□ -1.53
LIMA1-206ENST00000550611 ANKRD30AQ9BXX3 1397 aa5.52□□□□□ -1.53
LIMA1-206ENST00000550611 CEP152O94986 1710 aa5.51□□□□□ -1.53
LIMA1-206ENST00000550611 PPP1R15AO75807 674 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-206ENST00000550611 RAC2P15153 192 aa5.51□□□□□ -1.53
LIMA1-206ENST00000550611 ARNTP27540 789 aa5.51□□□□□ -1.53
LIMA1-206ENST00000550611 UNC5CLQ8IV45 518 aa5.51□□□□□ -1.53
LIMA1-206ENST00000550611 ABHD4Q8TB40 342 aa5.51□□□□□ -1.53
LIMA1-206ENST00000550611 KCNN1Q92952 543 aa5.51□□□□□ -1.53
LIMA1-206ENST00000550611 CCDC74AQ96AQ1 378 aa5.51□□□□□ -1.53
LIMA1-206ENST00000550611 HSPA12BQ96MM6 686 aa5.51□□□□□ -1.53
LIMA1-206ENST00000550611 ALPK1Q96QP1 1244 aa5.51□□□□□ -1.53
LIMA1-206ENST00000550611 KCNK12Q9HB15 430 aa5.51□□□□□ -1.53
LIMA1-206ENST00000550611 ADGRB3O60242 1522 aa5.51□□□□□ -1.53
LIMA1-206ENST00000550611 ASXL1Q8IXJ9 1541 aa5.51□□□□□ -1.53
LIMA1-206ENST00000550611 RPRD2Q5VT52 1461 aaKnown RBP5.51□□□□□ -1.53
LIMA1-206ENST00000550611 RALGAPBQ86X10 1494 aa5.51□□□□□ -1.53
LIMA1-206ENST00000550611 PTPRUQ92729 1446 aa5.5□□□□□ -1.53
LIMA1-206ENST00000550611 FANCGO15287 622 aa5.5□□□□□ -1.53
LIMA1-206ENST00000550611 FOXD2O60548 495 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-206ENST00000550611 XPCQ01831 940 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-206ENST00000550611 RING1Q06587 406 aa5.5□□□□□ -1.53
LIMA1-206ENST00000550611 ORC1Q13415 861 aa5.5□□□□□ -1.53
LIMA1-206ENST00000550611 THAP5Q7Z6K1 395 aa5.5□□□□□ -1.53
LIMA1-206ENST00000550611 SULF2Q8IWU5 870 aa5.5□□□□□ -1.53
LIMA1-206ENST00000550611 CAMKK2Q96RR4 588 aa5.5□□□□□ -1.53
LIMA1-206ENST00000550611 EMILIN2Q9BXX0 1053 aa5.5□□□□□ -1.53
LIMA1-206ENST00000550611 PDGFDQ9GZP0 370 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-206ENST00000550611 DNAJC25Q9H1X3 360 aa5.5□□□□□ -1.53
LIMA1-206ENST00000550611 BRPF3Q9ULD4 1205 aa5.5□□□□□ -1.53
LIMA1-206ENST00000550611 CCDC9Q9Y3X0 531 aaKnown RBP5.5□□□□□ -1.53
LIMA1-206ENST00000550611 CHD2O14647 1828 aaKnown RBP5.5□□□□□ -1.53
LIMA1-206ENST00000550611 ADGRL2O95490 1459 aa5.5□□□□□ -1.53
LIMA1-206ENST00000550611 TMEM88BA6NKF7 163 aa5.49□□□□□ -1.53
LIMA1-206ENST00000550611 FAM155AB1AL88 458 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-206ENST00000550611 KCNQ2O43526 872 aa5.49□□□□□ -1.53
LIMA1-206ENST00000550611 GADD45BO75293 160 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-206ENST00000550611 XRCC5P13010 732 aaKnown RBP5.49□□□□□ -1.53
LIMA1-206ENST00000550611 ZNF252P-AS1Q0IIN9 211 aa5.49□□□□□ -1.53
LIMA1-206ENST00000550611 PDE3BQ13370 1112 aa5.49□□□□□ -1.53
LIMA1-206ENST00000550611 GRM2Q14416 872 aa5.49□□□□□ -1.53
LIMA1-206ENST00000550611 PPM1JQ5JR12 505 aa5.49□□□□□ -1.53
LIMA1-206ENST00000550611 MFSD4AQ8N468 514 aa5.49□□□□□ -1.53
LIMA1-206ENST00000550611 KCT2Q8NC54 265 aa5.49□□□□□ -1.53
LIMA1-206ENST00000550611 STK35Q8TDR2 534 aa5.49□□□□□ -1.53
LIMA1-206ENST00000550611 GPBAR1Q8TDU6 330 aa5.49□□□□□ -1.53
LIMA1-206ENST00000550611 IRF2BPLQ9H1B7 796 aa5.49□□□□□ -1.53
LIMA1-206ENST00000550611 SPON1Q9HCB6 807 aa5.49□□□□□ -1.53
LIMA1-206ENST00000550611 GPN3Q9UHW5 284 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-206ENST00000550611 GLI3P10071 1580 aa5.49□□□□□ -1.53
LIMA1-206ENST00000550611 GOLGB1Q14789 3259 aaKnown RBP5.49□□□□□ -1.53
LIMA1-206ENST00000550611 DCCP43146 1447 aa5.48□□□□□ -1.53
LIMA1-206ENST00000550611 MST1RQ04912 1400 aa5.48□□□□□ -1.53
LIMA1-206ENST00000550611 A0A0G2JLL6 359 aaPredicted RBP5.48□□□□□ -1.53
LIMA1-206ENST00000550611 LRIG2O94898 1065 aa5.48□□□□□ -1.53
LIMA1-206ENST00000550611 ZBTB37Q5TC79 503 aa5.48□□□□□ -1.53
LIMA1-206ENST00000550611 MAP1SQ66K74 1059 aaPredicted RBP5.48□□□□□ -1.53
LIMA1-206ENST00000550611 DTHD1Q6ZMT9 781 aa5.48□□□□□ -1.53
LIMA1-206ENST00000550611 ARMCX6Q7L4S7 300 aa5.48□□□□□ -1.53
LIMA1-206ENST00000550611 UBE3DQ7Z6J8 389 aa5.48□□□□□ -1.53
LIMA1-206ENST00000550611 FAM129BQ96TA1 746 aa5.48□□□□□ -1.53
LIMA1-206ENST00000550611 ZCCHC4Q9H5U6 513 aa5.48□□□□□ -1.53
LIMA1-206ENST00000550611 ST14Q9Y5Y6 855 aa5.48□□□□□ -1.53
LIMA1-206ENST00000550611 ANKRD50Q9ULJ7 1429 aa5.48□□□□□ -1.53
LIMA1-206ENST00000550611 TRIM37O94972 964 aa5.47□□□□□ -1.53
LIMA1-206ENST00000550611 ABL1P00519 1130 aa5.47□□□□□ -1.53
LIMA1-206ENST00000550611 SYN1P17600 705 aa5.47□□□□□ -1.53
LIMA1-206ENST00000550611 NME2P22392 152 aa5.47□□□□□ -1.53
LIMA1-206ENST00000550611 ZNF211Q13398 564 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-206ENST00000550611 CDKAL1Q5VV42 579 aa5.47□□□□□ -1.53
LIMA1-206ENST00000550611 PHLDB3Q6NSJ2 640 aa5.47□□□□□ -1.53
LIMA1-206ENST00000550611 ANO2Q9NQ90 1003 aa5.47□□□□□ -1.53
LIMA1-206ENST00000550611 EGFL7Q9UHF1 273 aa5.47□□□□□ -1.53
LIMA1-206ENST00000550611 TMEM131LA2VDJ0 1609 aa5.47□□□□□ -1.53
LIMA1-206ENST00000550611 PTPN23Q9H3S7 1636 aa5.47□□□□□ -1.53
LIMA1-206ENST00000550611 PTCH1Q13635 1447 aa5.47□□□□□ -1.53
LIMA1-206ENST00000550611 METP08581 1390 aa5.46□□□□□ -1.54
LIMA1-206ENST00000550611 PRR33A8MZF0 331 aa5.46□□□□□ -1.54
LIMA1-206ENST00000550611 H3BS24 57 aa5.46□□□□□ -1.54
LIMA1-206ENST00000550611 EIF1AYO14602 144 aaKnown RBP5.46□□□□□ -1.54
LIMA1-206ENST00000550611 ICMTO60725 284 aa5.46□□□□□ -1.54
LIMA1-206ENST00000550611 SLITRK5O94991 958 aa5.46□□□□□ -1.54
LIMA1-206ENST00000550611 SFRP5Q5T4F7 317 aa5.46□□□□□ -1.54
LIMA1-206ENST00000550611 CDC37L1Q7L3B6 337 aa5.46□□□□□ -1.54
LIMA1-206ENST00000550611 TTC6Q86TZ1 520 aa5.46□□□□□ -1.54
LIMA1-206ENST00000550611 BAHD1Q8TBE0 780 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-206ENST00000550611 MYLIPQ8WY64 445 aa5.46□□□□□ -1.54
LIMA1-206ENST00000550611 ACSBG1Q96GR2 724 aa5.46□□□□□ -1.54
LIMA1-206ENST00000550611 KCNC2Q96PR1 638 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms