RNA–Protein interactions for RNA: ENST00000550280.1

SMARCD1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 2

Gene SMARCD1, Length 567 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-208ENST00000550280 NCAPG2Q86XI2 1143 aa13.98□□□□□ -0.17
SMARCD1-208ENST00000550280 RPAP2Q8IXW5 612 aaPredicted RBP13.98□□□□□ -0.17
SMARCD1-208ENST00000550280 MB21D1Q8N884 522 aa13.98□□□□□ -0.17
SMARCD1-208ENST00000550280 FAM161BQ96MY7 647 aa13.98□□□□□ -0.17
SMARCD1-208ENST00000550280 PUS7LQ9H0K6 701 aaKnown RBP13.98□□□□□ -0.17
SMARCD1-208ENST00000550280 BCL11AQ9H165 835 aa13.98□□□□□ -0.17
SMARCD1-208ENST00000550280 MROH8Q9H579 483 aa13.98□□□□□ -0.17
SMARCD1-208ENST00000550280 ATP8A2Q9NTI2 1148 aa13.98□□□□□ -0.17
SMARCD1-208ENST00000550280 COG6Q9Y2V7 657 aa13.98□□□□□ -0.17
SMARCD1-208ENST00000550280 BAZ2AQ9UIF9 1905 aaKnown RBP13.98□□□□□ -0.17
SMARCD1-208ENST00000550280 WDR46O15213 610 aaKnown RBP13.97□□□□□ -0.17
SMARCD1-208ENST00000550280 PGK2P07205 417 aa13.97□□□□□ -0.17
SMARCD1-208ENST00000550280 EEF2P13639 858 aaKnown RBP13.97□□□□□ -0.17
SMARCD1-208ENST00000550280 CTR9Q6PD62 1173 aa13.97□□□□□ -0.17
SMARCD1-208ENST00000550280 FERMT2Q96AC1 680 aa13.97□□□□□ -0.17
SMARCD1-208ENST00000550280 LENG1Q96BZ8 264 aaPredicted RBP13.97□□□□□ -0.17
SMARCD1-208ENST00000550280 HAUS7Q99871 368 aa13.97□□□□□ -0.17
SMARCD1-208ENST00000550280 ZNF214Q9UL59 606 aaPredicted RBP13.97□□□□□ -0.17
SMARCD1-208ENST00000550280 SPTBN5Q9NRC6 3674 aaKnown RBP13.96□□□□□ -0.17
SMARCD1-208ENST00000550280 EPHB4P54760 987 aa13.96□□□□□ -0.17
SMARCD1-208ENST00000550280 ZNF792Q3KQV3 632 aa13.96□□□□□ -0.17
SMARCD1-208ENST00000550280 SAMD1Q6SPF0 538 aaPredicted RBP13.96□□□□□ -0.17
SMARCD1-208ENST00000550280 RIOX2Q8IUF8 465 aa13.96□□□□□ -0.17
SMARCD1-208ENST00000550280 ARRDC4Q8NCT1 418 aa13.96□□□□□ -0.17
SMARCD1-208ENST00000550280 BADQ92934 168 aa13.96□□□□□ -0.17
SMARCD1-208ENST00000550280 LBHD1Q9BQE6 289 aaPredicted RBP13.96□□□□□ -0.17
SMARCD1-208ENST00000550280 ARHGEF10LQ9HCE6 1279 aa13.96□□□□□ -0.17
SMARCD1-208ENST00000550280 GREB1LQ9C091 1923 aaPredicted RBP13.96□□□□□ -0.18
SMARCD1-208ENST00000550280 COL11A1P12107 1806 aaPredicted RBP13.95□□□□□ -0.18
SMARCD1-208ENST00000550280 KBTBD13C9JR72 458 aa13.95□□□□□ -0.18
SMARCD1-208ENST00000550280 VWA5AO00534 786 aa13.95□□□□□ -0.18
SMARCD1-208ENST00000550280 RAB11FIP3O75154 756 aa13.95□□□□□ -0.18
SMARCD1-208ENST00000550280 ZNF865P0CJ78 1059 aaPredicted RBP13.95□□□□□ -0.18
SMARCD1-208ENST00000550280 FCER1AP12319 257 aa13.95□□□□□ -0.18
SMARCD1-208ENST00000550280 UBE3CQ15386 1083 aa13.95□□□□□ -0.18
SMARCD1-208ENST00000550280 C1orf53Q5VUE5 145 aa13.95□□□□□ -0.18
SMARCD1-208ENST00000550280 CCDC17Q96LX7 622 aa13.95□□□□□ -0.18
SMARCD1-208ENST00000550280 NUP88Q99567 741 aaPredicted RBP13.95□□□□□ -0.18
SMARCD1-208ENST00000550280 COL25A1Q9BXS0 654 aaPredicted RBP13.95□□□□□ -0.18
SMARCD1-208ENST00000550280 TTYH1Q9H313 450 aaPredicted RBP13.95□□□□□ -0.18
SMARCD1-208ENST00000550280 PPP1R9AQ9ULJ8 1098 aa13.95□□□□□ -0.18
SMARCD1-208ENST00000550280 PHF24Q9UPV7 400 aa13.95□□□□□ -0.18
SMARCD1-208ENST00000550280 ROBO3Q96MS0 1386 aa13.95□□□□□ -0.18
SMARCD1-208ENST00000550280 PRUNE2Q8WUY3 3088 aa13.94□□□□□ -0.18
SMARCD1-208ENST00000550280 SMARCA5O60264 1052 aaPredicted RBP13.94□□□□□ -0.18
SMARCD1-208ENST00000550280 PGK1P00558 417 aa13.94□□□□□ -0.18
SMARCD1-208ENST00000550280 MYCNP04198 464 aaPredicted RBP13.94□□□□□ -0.18
SMARCD1-208ENST00000550280 IRX5P78411 483 aaPredicted RBP13.94□□□□□ -0.18
SMARCD1-208ENST00000550280 TLE2Q04725 743 aa13.94□□□□□ -0.18
SMARCD1-208ENST00000550280 FAM83BQ5T0W9 1011 aa13.94□□□□□ -0.18
SMARCD1-208ENST00000550280 C20orf194Q5TEA3 1177 aa13.94□□□□□ -0.18
SMARCD1-208ENST00000550280 TINF2Q9BSI4 451 aa13.94□□□□□ -0.18
SMARCD1-208ENST00000550280 PRDM5Q9NQX1 630 aaPredicted RBP13.94□□□□□ -0.18
SMARCD1-208ENST00000550280 DDX19BQ9UMR2 479 aa13.94□□□□□ -0.18
SMARCD1-208ENST00000550280 RIPK3Q9Y572 518 aa13.94□□□□□ -0.18
SMARCD1-208ENST00000550280 SLC4A4Q9Y6R1 1079 aa13.94□□□□□ -0.18
SMARCD1-208ENST00000550280 ADAMTS4O75173 837 aa13.93□□□□□ -0.18
SMARCD1-208ENST00000550280 HMMRO75330 724 aa13.93□□□□□ -0.18
SMARCD1-208ENST00000550280 SLC25A27O95847 323 aa13.93□□□□□ -0.18
SMARCD1-208ENST00000550280 RASA1P20936 1047 aa13.93□□□□□ -0.18
SMARCD1-208ENST00000550280 STAT3P40763 770 aa13.93□□□□□ -0.18
SMARCD1-208ENST00000550280 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.93□□□□□ -0.18
SMARCD1-208ENST00000550280 FGD4Q96M96 766 aa13.93□□□□□ -0.18
SMARCD1-208ENST00000550280 STRBPQ96SI9 672 aaKnown RBP13.93□□□□□ -0.18
SMARCD1-208ENST00000550280 MMP19Q99542 508 aa13.93□□□□□ -0.18
SMARCD1-208ENST00000550280 CDX2Q99626 313 aaPredicted RBP13.93□□□□□ -0.18
SMARCD1-208ENST00000550280 SH2D4AQ9H788 454 aa13.93□□□□□ -0.18
SMARCD1-208ENST00000550280 KANSL2Q9H9L4 492 aa13.93□□□□□ -0.18
SMARCD1-208ENST00000550280 EPB41L4AQ9HCS5 686 aaPredicted RBP13.93□□□□□ -0.18
SMARCD1-208ENST00000550280 XPNPEP3Q9NQH7 507 aa13.93□□□□□ -0.18
SMARCD1-208ENST00000550280 MYH8P13535 1937 aa13.92□□□□□ -0.18
SMARCD1-208ENST00000550280 SMCHD1A6NHR9 2005 aa13.92□□□□□ -0.18
SMARCD1-208ENST00000550280 A0A1W2PQ45 241 aaPredicted RBP13.92□□□□□ -0.18
SMARCD1-208ENST00000550280 A0A1W2PQY0 241 aa13.92□□□□□ -0.18
SMARCD1-208ENST00000550280 GSG1L2A8MUP6 293 aa13.92□□□□□ -0.18
SMARCD1-208ENST00000550280 ADCY6O43306 1168 aa13.92□□□□□ -0.18
SMARCD1-208ENST00000550280 SNAI1O95863 264 aaPredicted RBP13.92□□□□□ -0.18
SMARCD1-208ENST00000550280 OSBP2Q969R2 916 aa13.92□□□□□ -0.18
SMARCD1-208ENST00000550280 SEMA6BQ9H3T3 888 aa13.92□□□□□ -0.18
SMARCD1-208ENST00000550280 SLC5A4Q9NY91 659 aa13.92□□□□□ -0.18
SMARCD1-208ENST00000550280 PRKAG2Q9UGJ0 569 aa13.92□□□□□ -0.18
SMARCD1-208ENST00000550280 NRBP1Q9UHY1 535 aa13.92□□□□□ -0.18
SMARCD1-208ENST00000550280 DIS3Q9Y2L1 958 aaKnown RBP13.92□□□□□ -0.18
SMARCD1-208ENST00000550280 DNAJC25-GNG10A0A024R161 153 aa13.91□□□□□ -0.18
SMARCD1-208ENST00000550280 IGKV6D-41A0A0C4DH26 115 aa13.91□□□□□ -0.18
SMARCD1-208ENST00000550280 MYADML2A6NDP7 307 aa13.91□□□□□ -0.18
SMARCD1-208ENST00000550280 SBK1Q52WX2 424 aa13.91□□□□□ -0.18
SMARCD1-208ENST00000550280 ZNF697Q5TEC3 545 aa13.91□□□□□ -0.18
SMARCD1-208ENST00000550280 CCSAPQ6IQ19 270 aaPredicted RBP13.91□□□□□ -0.18
SMARCD1-208ENST00000550280 STK11IPQ8N1F8 1099 aa13.91□□□□□ -0.18
SMARCD1-208ENST00000550280 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.91□□□□□ -0.18
SMARCD1-208ENST00000550280 ZNFX1Q9P2E3 1918 aaKnown RBP13.91□□□□□ -0.18
SMARCD1-208ENST00000550280 KIAA0355O15063 1070 aa13.9□□□□□ -0.18
SMARCD1-208ENST00000550280 NDUFB10O96000 172 aa13.9□□□□□ -0.18
SMARCD1-208ENST00000550280 RARBP10826 455 aa13.9□□□□□ -0.18
SMARCD1-208ENST00000550280 KCTD2Q14681 263 aa13.9□□□□□ -0.18
SMARCD1-208ENST00000550280 TSHZ3Q63HK5 1081 aa13.9□□□□□ -0.18
SMARCD1-208ENST00000550280 KLHDC9Q8NEP7 349 aa13.9□□□□□ -0.18
SMARCD1-208ENST00000550280 MYLIPQ8WY64 445 aa13.9□□□□□ -0.18
SMARCD1-208ENST00000550280 NYAP2Q9P242 653 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms